Wall clock time and date at job start Fri Apr 10 2020 14:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46938 * 2 1 4 4 C 1.50700 * 109.47078 * 119.99560 * 2 1 3 5 5 O 1.21281 * 119.99863 * 99.99848 * 4 2 1 6 6 N 1.34775 * 120.00209 * 280.00232 * 4 2 1 7 7 C 1.46499 * 120.00135 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.88256 * 31.12362 * 7 6 4 9 9 C 1.54910 * 111.00855 * 267.19972 * 7 6 4 10 10 N 1.47421 * 104.83166 * 204.91396 * 9 7 6 11 11 C 1.36935 * 125.64627 * 204.07831 * 10 9 7 12 12 H 1.07997 * 120.00446 * 0.03035 * 11 10 9 13 13 C 1.38815 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.31613 * 120.00360 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47282 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47062 * 119.99973 * 15 13 11 18 18 H 1.48501 * 109.47289 * 240.00022 * 15 13 11 19 19 C 1.47027 * 108.70472 * 24.12905 * 10 9 7 20 20 C 1.54328 * 107.26870 * 358.94121 * 19 10 9 21 21 H 1.09001 * 110.71468 * 219.44531 * 20 19 10 22 22 O 1.42897 * 110.72258 * 96.17210 * 20 19 10 23 23 S 1.81393 * 109.47399 * 239.99912 * 2 1 3 24 24 C 1.81404 * 101.92151 * 59.99813 * 23 2 1 25 25 O 1.42099 * 108.57770 * 305.51509 * 23 2 1 26 26 O 1.42093 * 108.58136 * 174.48636 * 23 2 1 27 27 H 1.08997 * 109.47169 * 60.00300 * 1 2 3 28 28 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47443 * 300.00254 * 1 2 3 30 30 H 0.97001 * 120.00148 * 0.02562 * 6 4 2 31 31 H 1.08998 * 110.36390 * 323.75291 * 9 7 6 32 32 H 1.08995 * 110.36532 * 86.07648 * 9 7 6 33 33 H 0.96996 * 120.00495 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.87808 * 239.52171 * 19 10 9 35 35 H 1.09003 * 109.88323 * 118.35673 * 19 10 9 36 36 H 0.96701 * 113.99546 * 66.47222 * 22 20 19 37 37 H 1.09002 * 109.47124 * 60.00027 * 24 23 2 38 38 H 1.09001 * 109.46975 * 300.00148 * 24 23 2 39 39 H 1.09004 * 109.47147 * 180.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4064 -1.8616 1.1559 6 7 2.0658 -0.0663 2.4140 7 6 2.5536 -0.7570 3.6103 8 1 3.3144 -1.4932 3.3508 9 6 1.3857 -1.4144 4.3870 10 7 1.8656 -1.5133 5.7774 11 6 1.4175 -2.4055 6.7147 12 1 0.6471 -3.1174 6.4578 13 6 1.9537 -2.3949 7.9951 14 7 2.8923 -1.5271 8.3084 15 14 1.3431 -3.6124 9.2735 16 1 0.2921 -4.4737 8.6745 17 1 2.4746 -4.4577 9.7322 18 1 0.7766 -2.8732 10.4302 19 6 2.9040 -0.4947 5.9915 20 6 3.0926 0.2549 4.6557 21 1 4.1468 0.4678 4.4786 22 8 2.3224 1.4585 4.6383 23 16 2.1347 -0.8551 -1.4810 24 6 1.4229 0.1515 -2.8118 25 8 1.5480 -2.1484 -1.5284 26 8 3.5496 -0.7330 -1.5284 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7663 0.8544 2.4738 31 1 0.4959 -0.7869 4.3366 32 1 1.1748 -2.4061 3.9870 33 1 3.2668 -1.5195 9.2031 34 1 3.8386 -0.9738 6.2829 35 1 2.5851 0.2027 6.7661 36 1 2.6186 2.1242 5.2740 37 1 1.7894 1.1747 -2.7291 38 1 0.3361 0.1470 -2.7291 39 1 1.7153 -0.2627 -3.7768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219886492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:07 Heat of formation + Delta-G solvation = -153.396088 kcal Electronic energy + Delta-G solvation = -24086.414001 eV Core-core repulsion = 20349.420519 eV Total energy + Delta-G solvation = -3736.993482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.30288 -39.59631 -38.02975 -36.99730 -36.49039 -35.65277 -34.60412 -33.43924 -30.43745 -30.09880 -28.84157 -26.63147 -25.64245 -22.66682 -22.08000 -21.58202 -19.80018 -19.30251 -18.65866 -18.41886 -17.82177 -17.04155 -16.92246 -16.78346 -16.40773 -16.13447 -15.81148 -15.37186 -14.84163 -14.67287 -14.49561 -14.06658 -14.04560 -14.01051 -13.89306 -13.25541 -13.21198 -13.11078 -13.03947 -12.90080 -12.83731 -12.79558 -12.33082 -12.14346 -12.03173 -11.92687 -11.91236 -11.49329 -11.17491 -10.89893 -10.80065 -10.24651 -8.98162 -7.91493 -5.27573 -1.04099 1.30551 1.44084 1.45262 1.55624 1.77291 1.85234 2.45691 2.85896 3.05070 3.13577 3.27723 3.37837 3.63126 3.70065 3.79935 3.90089 4.00983 4.15124 4.21330 4.30109 4.44479 4.60456 4.62415 4.67675 4.77848 4.94398 5.00449 5.20707 5.29135 5.36877 5.44267 5.62166 6.11479 6.33523 6.82454 7.03791 7.04711 7.67532 8.30844 9.18544 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.003389 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.236588 B = 8260.320172 C = 8650.759142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.600 4.600 3 H 0.206 0.794 4 C 0.525 3.475 5 O -0.583 6.583 6 N -0.679 5.679 7 C 0.143 3.857 8 H 0.090 0.910 9 C 0.132 3.868 10 N -0.622 5.622 11 C -0.248 4.248 12 H 0.076 0.924 13 C -0.059 4.059 14 N -0.947 5.947 15 Si 0.981 3.019 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.287 1.287 19 C 0.159 3.841 20 C 0.095 3.905 21 H 0.092 0.908 22 O -0.562 6.562 23 S 2.422 3.578 24 C -0.622 4.622 25 O -0.975 6.975 26 O -0.986 6.986 27 H 0.133 0.867 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.426 0.574 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.250 0.750 34 H 0.023 0.977 35 H 0.030 0.970 36 H 0.400 0.600 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 13.974 -21.416 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.709 4.709 3 H 0.223 0.777 4 C 0.311 3.689 5 O -0.464 6.464 6 N -0.331 5.331 7 C 0.036 3.964 8 H 0.108 0.892 9 C 0.005 3.995 10 N -0.349 5.349 11 C -0.377 4.377 12 H 0.094 0.906 13 C -0.253 4.253 14 N -0.595 5.595 15 Si 0.808 3.192 16 H -0.195 1.195 17 H -0.217 1.217 18 H -0.213 1.213 19 C 0.033 3.967 20 C 0.034 3.966 21 H 0.109 0.891 22 O -0.370 6.370 23 S 2.607 3.393 24 C -0.776 4.776 25 O -0.972 6.972 26 O -0.983 6.983 27 H 0.152 0.848 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.251 0.749 37 H 0.187 0.813 38 H 0.184 0.816 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.309 12.048 -21.716 25.205 hybrid contribution -0.209 0.241 1.928 1.954 sum -4.518 12.289 -19.788 23.728 Atomic orbital electron populations 1.21839 0.85510 1.04819 1.08059 1.30649 1.10474 1.16897 1.12842 0.77668 1.20181 0.77275 0.86057 0.85393 1.90866 1.50060 1.19082 1.86368 1.45428 1.64200 1.17416 1.06034 1.22058 0.96486 0.94171 0.83678 0.89242 1.21873 0.95431 0.97427 0.84730 1.44559 1.44128 1.38641 1.07569 1.19453 1.17021 1.10164 0.91083 0.90564 1.25611 0.99205 1.01221 0.99245 1.70107 1.30684 1.38906 1.19853 0.84986 0.77415 0.78081 0.78669 1.19502 1.21701 1.21327 1.21741 0.91438 0.90311 0.93173 1.23092 0.94799 0.84976 0.93701 0.89080 1.86178 1.60022 1.26543 1.64290 1.07754 0.75197 0.77218 0.79131 1.30099 1.15779 1.16415 1.15299 1.93527 1.79444 1.38119 1.86100 1.93522 1.30520 1.87693 1.86556 0.84825 0.92027 0.88886 0.73521 0.94983 0.95560 0.94077 0.95839 0.95165 0.74898 0.81337 0.81649 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.93 71.98 0.64 -0.85 16 2 C -0.60 -9.37 3.10 29.85 0.09 -9.28 16 3 H 0.21 0.93 8.14 -2.39 -0.02 0.91 16 4 C 0.53 15.61 7.00 87.66 0.61 16.22 16 5 O -0.58 -24.10 15.29 5.48 0.08 -24.01 16 6 N -0.68 -19.22 5.17 -435.97 -2.25 -21.48 16 7 C 0.14 5.32 3.31 46.38 0.15 5.48 16 8 H 0.09 3.72 7.54 -2.39 -0.02 3.71 16 9 C 0.13 5.92 6.92 86.86 0.60 6.52 16 10 N -0.62 -32.97 3.39 -691.99 -2.35 -35.32 16 11 C -0.25 -14.42 10.28 84.03 0.86 -13.56 16 12 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 13 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 14 N -0.95 -56.00 10.31 21.65 0.22 -55.77 16 15 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 C 0.16 7.56 5.14 86.73 0.45 8.01 16 20 C 0.09 3.26 4.20 31.78 0.13 3.39 16 21 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 22 O -0.56 -15.54 12.14 -148.98 -1.81 -17.35 16 23 S 2.42 47.43 4.32 -56.49 -0.24 47.18 16 24 C -0.62 -1.96 10.17 113.37 1.15 -0.81 16 25 O -0.97 -29.67 17.40 -122.76 -2.14 -31.80 16 26 O -0.99 -28.47 18.10 -127.37 -2.30 -30.78 16 27 H 0.13 -0.09 6.56 -2.39 -0.02 -0.10 16 28 H 0.06 0.98 8.06 -2.38 -0.02 0.96 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.43 9.15 7.59 -92.71 -0.70 8.45 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.02 1.26 7.38 -2.39 -0.02 1.24 16 35 H 0.03 1.56 7.43 -2.39 -0.02 1.54 16 36 H 0.40 8.11 9.12 -74.06 -0.68 7.44 16 37 H 0.17 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.17 -0.45 6.87 -2.39 -0.02 -0.46 16 39 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -94.60 335.20 -3.89 -98.48 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -0.29 Total: 10.23 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.16 Total: 12.18 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -4.38 Total: -112.57 kcal Atomic # 8 Polarization: -97.78 SS G_CDS: -6.17 Total: -103.95 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 47.43 SS G_CDS: -0.24 Total: 47.18 kcal Total: -94.60 -3.89 -98.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219886492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.911 kcal (2) G-P(sol) polarization free energy of solvation -94.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds