Wall clock time and date at job start Fri Apr 10 2020 14:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.47239 * 2 1 4 4 C 1.46500 * 120.00400 * 275.00306 * 3 2 1 5 5 C 1.50706 * 109.46876 * 274.99633 * 4 3 2 6 6 H 1.08001 * 120.00190 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99868 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00022 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47305 * 60.00336 * 9 7 5 11 11 H 1.48501 * 109.47323 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47477 * 300.00446 * 9 7 5 13 13 S 1.65610 * 119.99701 * 95.00245 * 3 2 1 14 14 O 1.42097 * 106.40009 * 336.45569 * 13 3 2 15 15 O 1.42100 * 106.39900 * 203.53816 * 13 3 2 16 16 N 1.65599 * 107.21585 * 90.00211 * 13 3 2 17 17 C 1.46494 * 120.00331 * 65.00387 * 16 13 3 18 18 C 1.53780 * 113.61649 * 144.99877 * 17 16 13 19 19 C 1.53776 * 87.08391 * 89.19691 * 18 17 16 20 20 C 1.50700 * 113.61608 * 139.98003 * 19 18 17 21 21 O 1.20822 * 119.99958 * 1.52893 * 20 19 18 22 22 O 1.34234 * 120.00068 * 181.53085 * 20 19 18 23 23 C 1.53786 * 87.17529 * 25.38941 * 19 18 17 24 24 H 1.09001 * 109.47146 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46721 * 299.99907 * 1 2 3 26 26 H 1.09001 * 109.47048 * 59.99646 * 1 2 3 27 27 H 1.09004 * 109.46822 * 239.99719 * 2 1 3 28 28 H 1.09001 * 109.47048 * 120.00354 * 2 1 3 29 29 H 1.08996 * 109.47260 * 35.00099 * 4 3 2 30 30 H 1.09000 * 109.47338 * 154.99925 * 4 3 2 31 31 H 0.96993 * 119.99821 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99236 * 244.99528 * 16 13 3 33 33 H 1.08999 * 112.85473 * 13.79490 * 17 16 13 34 34 H 1.08995 * 113.61228 * 334.64653 * 18 17 16 35 35 H 1.09003 * 113.61203 * 203.74768 * 18 17 16 36 36 H 1.09000 * 113.61979 * 270.80261 * 19 18 17 37 37 H 0.96698 * 117.00153 * 179.97438 * 22 20 19 38 38 H 1.08999 * 113.61104 * 89.15358 * 23 19 18 39 39 H 1.08994 * 113.61609 * 220.06183 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4949 1.7888 -1.8823 6 1 4.1722 1.1111 -1.3839 7 6 3.8526 2.3607 -3.0848 8 7 3.0276 3.1857 -3.6919 9 14 5.5089 1.9637 -3.8517 10 1 5.5986 0.5038 -4.1080 11 1 5.6509 2.7013 -5.1327 12 1 6.5945 2.3709 -2.9237 13 16 2.4123 2.1200 1.4288 14 8 1.6869 1.4413 2.4448 15 8 2.3058 3.5184 1.1999 16 7 4.0145 1.8135 1.7137 17 6 5.0352 2.3523 0.8115 18 6 6.3369 2.7550 1.5243 19 6 6.8183 1.3133 1.2908 20 6 8.2715 1.2174 0.9033 21 8 8.9447 2.2181 0.8306 22 8 8.8180 0.0202 0.6389 23 6 5.8567 1.2672 0.0916 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.3618 1.8098 -1.9452 30 1 2.0922 3.1802 -1.0755 31 1 3.2794 3.5882 -4.5376 32 1 4.2772 1.2772 2.4782 33 1 4.6467 3.1216 0.1441 34 1 6.1994 3.0045 2.5763 35 1 6.9177 3.5023 0.9834 36 1 6.5482 0.6273 2.0937 37 1 9.7534 0.0090 0.3942 38 1 6.3059 1.6070 -0.8415 39 1 5.3321 0.3173 -0.0111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596300314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:43 Heat of formation + Delta-G solvation = -150.797295 kcal Electronic energy + Delta-G solvation = -24993.267098 eV Core-core repulsion = 21256.386309 eV Total energy + Delta-G solvation = -3736.880790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62149 -38.44979 -36.66415 -36.08254 -36.00782 -35.23356 -32.75906 -32.43911 -29.96348 -26.81020 -26.43767 -25.59300 -23.13765 -21.92761 -21.71612 -19.52405 -18.92986 -18.10623 -17.39285 -16.89455 -16.54930 -16.28615 -15.88928 -15.56870 -15.08693 -14.50771 -14.09677 -13.95454 -13.53718 -13.28712 -12.93522 -12.75183 -12.38334 -12.19409 -12.08338 -11.98268 -11.70417 -11.55308 -11.49823 -11.35359 -11.19545 -11.06882 -10.96230 -10.79713 -10.62776 -10.45343 -10.34915 -10.19015 -10.03119 -9.65631 -9.13230 -8.53307 -8.08618 -6.15245 -4.21454 1.25415 2.21365 3.07562 3.19174 3.25498 3.28337 3.47540 4.12996 4.29998 4.45459 4.60160 4.92657 5.00220 5.15328 5.19386 5.36117 5.39738 5.60202 5.74858 5.78474 5.84991 5.96011 6.02457 6.09460 6.10353 6.25897 6.30914 6.47317 6.61676 6.65960 6.71697 7.24056 7.35663 7.44456 7.64655 7.83086 7.90055 8.12013 8.83813 9.44182 10.92928 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.007476 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.829364 B = 3744.313405 C = 5271.848072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.990 5.990 4 C 0.243 3.757 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.273 1.273 13 S 2.787 3.213 14 O -1.000 7.000 15 O -0.977 6.977 16 N -1.112 6.112 17 C 0.143 3.857 18 C -0.126 4.126 19 C -0.119 4.119 20 C 0.489 3.511 21 O -0.518 6.518 22 O -0.517 6.517 23 C -0.122 4.122 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.405 0.595 38 H 0.098 0.902 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -6.988 8.513 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.121 3.879 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.199 1.199 13 S 2.794 3.206 14 O -0.984 6.984 15 O -0.961 6.961 16 N -0.867 5.867 17 C 0.035 3.965 18 C -0.165 4.165 19 C -0.138 4.138 20 C 0.332 3.668 21 O -0.406 6.406 22 O -0.328 6.328 23 C -0.161 4.161 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.147 0.853 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.263 0.737 38 H 0.117 0.883 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.322 -5.936 8.815 11.472 hybrid contribution 2.087 -0.809 -0.739 2.357 sum 6.409 -6.744 8.076 12.320 Atomic orbital electron populations 1.22207 0.97001 1.01354 1.02381 1.20961 0.93616 0.82845 1.02088 1.57689 1.78462 1.22940 1.24127 1.19224 0.97438 0.92249 0.79030 1.21762 1.02452 1.28234 1.06152 0.90829 1.24907 0.96846 0.94909 0.96872 1.69917 1.35861 1.29639 1.17077 0.86845 0.84496 0.78617 0.79029 1.20107 1.21276 1.19856 1.01744 0.72485 0.73719 0.72617 1.93551 1.70308 1.76329 1.58222 1.93587 1.85740 1.31075 1.85688 1.55900 1.25395 1.67898 1.37553 1.21571 0.87745 0.96347 0.90852 1.23380 0.96447 0.94204 1.02499 1.22742 0.87011 1.01412 1.02625 1.23555 0.90713 0.80201 0.72370 1.90696 1.63414 1.37560 1.48889 1.84582 1.32384 1.35029 1.80805 1.23504 0.95084 1.01752 0.95799 0.92410 0.92681 0.92080 0.90200 0.91942 0.94400 0.93140 0.92532 0.76230 0.85284 0.90047 0.87581 0.86082 0.73709 0.88328 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.13 2.12 6.06 -4.05 -0.02 2.10 16 3 N -0.99 -18.76 2.82 -115.67 -0.33 -19.09 16 4 C 0.24 5.56 5.44 -5.19 -0.03 5.53 16 5 C -0.55 -12.81 7.79 -34.44 -0.27 -13.08 16 6 H 0.07 1.57 4.50 -52.49 -0.24 1.34 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.13 13.29 55.43 0.74 -23.40 16 9 Si 0.88 19.48 28.89 -169.99 -4.91 14.57 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -5.83 6.61 56.52 0.37 -5.45 16 13 S 2.79 51.30 6.07 -107.50 -0.65 50.64 16 14 O -1.00 -19.12 17.11 -57.17 -0.98 -20.10 16 15 O -0.98 -21.59 16.21 -57.17 -0.93 -22.51 16 16 N -1.11 -16.31 5.79 -4.12 -0.02 -16.33 16 17 C 0.14 2.24 3.65 -67.03 -0.24 1.99 16 18 C -0.13 -1.69 7.18 -25.92 -0.19 -1.87 16 19 C -0.12 -1.49 4.08 -90.96 -0.37 -1.86 16 20 C 0.49 6.60 7.85 36.01 0.28 6.88 16 21 O -0.52 -8.42 16.67 -18.75 -0.31 -8.73 16 22 O -0.52 -5.67 13.42 -39.27 -0.53 -6.20 16 23 C -0.12 -1.82 5.26 -25.82 -0.14 -1.96 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 28 H 0.06 0.89 7.61 -51.93 -0.40 0.49 16 29 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 30 H 0.05 1.29 6.91 -51.93 -0.36 0.93 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.41 4.66 8.80 -34.46 -0.30 4.36 16 33 H 0.13 2.41 7.08 -51.93 -0.37 2.04 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.11 1.52 7.45 -51.93 -0.39 1.14 16 36 H 0.12 1.20 8.12 -51.93 -0.42 0.78 16 37 H 0.40 2.71 9.10 45.56 0.41 3.13 16 38 H 0.10 1.67 6.90 -51.93 -0.36 1.31 16 39 H 0.09 1.31 7.50 -51.93 -0.39 0.92 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -31.85 335.16 -8.06 -39.91 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.50 Total: 9.02 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.69 Total: -2.83 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.39 Total: -58.81 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -2.74 Total: -57.55 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.91 Total: 14.57 kcal Atomic # 16 Polarization: 51.30 SS G_CDS: -0.65 Total: 50.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.85 -8.06 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596300314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.886 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds