Wall clock time and date at job start Fri Apr 10 2020 14:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.47239 * 2 1 4 4 C 1.46500 * 120.00400 * 275.00306 * 3 2 1 5 5 C 1.50706 * 109.46876 * 274.99633 * 4 3 2 6 6 H 1.08001 * 120.00190 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99868 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00022 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47305 * 60.00336 * 9 7 5 11 11 H 1.48501 * 109.47323 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47477 * 300.00446 * 9 7 5 13 13 S 1.65610 * 119.99701 * 95.00245 * 3 2 1 14 14 O 1.42097 * 106.40009 * 336.45569 * 13 3 2 15 15 O 1.42100 * 106.39900 * 203.53816 * 13 3 2 16 16 N 1.65599 * 107.21585 * 90.00211 * 13 3 2 17 17 C 1.46494 * 120.00331 * 65.00387 * 16 13 3 18 18 C 1.53780 * 113.61649 * 144.99877 * 17 16 13 19 19 C 1.53776 * 87.08391 * 89.19691 * 18 17 16 20 20 C 1.50700 * 113.61608 * 139.98003 * 19 18 17 21 21 O 1.20822 * 119.99958 * 1.52893 * 20 19 18 22 22 O 1.34234 * 120.00068 * 181.53085 * 20 19 18 23 23 C 1.53786 * 87.17529 * 25.38941 * 19 18 17 24 24 H 1.09001 * 109.47146 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46721 * 299.99907 * 1 2 3 26 26 H 1.09001 * 109.47048 * 59.99646 * 1 2 3 27 27 H 1.09004 * 109.46822 * 239.99719 * 2 1 3 28 28 H 1.09001 * 109.47048 * 120.00354 * 2 1 3 29 29 H 1.08996 * 109.47260 * 35.00099 * 4 3 2 30 30 H 1.09000 * 109.47338 * 154.99925 * 4 3 2 31 31 H 0.96993 * 119.99821 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99236 * 244.99528 * 16 13 3 33 33 H 1.08999 * 112.85473 * 13.79490 * 17 16 13 34 34 H 1.08995 * 113.61228 * 334.64653 * 18 17 16 35 35 H 1.09003 * 113.61203 * 203.74768 * 18 17 16 36 36 H 1.09000 * 113.61979 * 270.80261 * 19 18 17 37 37 H 0.96698 * 117.00153 * 179.97438 * 22 20 19 38 38 H 1.08999 * 113.61104 * 89.15358 * 23 19 18 39 39 H 1.08994 * 113.61609 * 220.06183 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4949 1.7888 -1.8823 6 1 4.1722 1.1111 -1.3839 7 6 3.8526 2.3607 -3.0848 8 7 3.0276 3.1857 -3.6919 9 14 5.5089 1.9637 -3.8517 10 1 5.5986 0.5038 -4.1080 11 1 5.6509 2.7013 -5.1327 12 1 6.5945 2.3709 -2.9237 13 16 2.4123 2.1200 1.4288 14 8 1.6869 1.4413 2.4448 15 8 2.3058 3.5184 1.1999 16 7 4.0145 1.8135 1.7137 17 6 5.0352 2.3523 0.8115 18 6 6.3369 2.7550 1.5243 19 6 6.8183 1.3133 1.2908 20 6 8.2715 1.2174 0.9033 21 8 8.9447 2.2181 0.8306 22 8 8.8180 0.0202 0.6389 23 6 5.8567 1.2672 0.0916 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.3618 1.8098 -1.9452 30 1 2.0922 3.1802 -1.0755 31 1 3.2794 3.5882 -4.5376 32 1 4.2772 1.2772 2.4782 33 1 4.6467 3.1216 0.1441 34 1 6.1994 3.0045 2.5763 35 1 6.9177 3.5023 0.9834 36 1 6.5482 0.6273 2.0937 37 1 9.7534 0.0090 0.3942 38 1 6.3059 1.6070 -0.8415 39 1 5.3321 0.3173 -0.0111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596300314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:42 Heat of formation + Delta-G solvation = -175.980486 kcal Electronic energy + Delta-G solvation = -24994.359123 eV Core-core repulsion = 21256.386309 eV Total energy + Delta-G solvation = -3737.972815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67947 -39.56716 -38.23166 -37.59144 -37.04228 -36.83378 -34.60775 -33.69090 -31.46313 -28.48272 -27.60453 -26.76682 -24.81433 -23.23472 -22.98637 -20.79481 -20.18826 -19.19282 -18.74870 -18.55175 -18.06455 -17.61687 -17.27520 -16.70924 -16.54054 -16.12751 -15.46290 -15.19086 -14.80682 -14.59799 -14.50342 -14.00198 -13.76255 -13.61762 -13.51291 -13.38569 -13.25396 -13.10703 -12.96489 -12.68942 -12.64372 -12.54799 -12.40097 -12.21888 -12.06917 -11.92286 -11.66547 -11.54678 -11.44541 -11.19042 -10.49831 -10.37832 -9.70665 -8.09397 -6.19712 -0.24162 1.18496 1.44571 1.45736 1.51288 2.02447 2.18273 2.45413 2.67662 3.23768 3.37786 3.43585 3.56575 3.84204 3.99985 4.08588 4.33396 4.45549 4.50221 4.58789 4.70805 4.77577 4.80125 4.90983 5.01552 5.05187 5.08720 5.22514 5.36515 5.44050 5.49236 5.62210 5.63426 5.86397 5.97688 6.20845 6.30717 6.94220 7.01150 7.49508 8.99270 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.007476 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.829364 B = 3744.313405 C = 5271.848072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.994 5.994 4 C 0.257 3.743 5 C -0.533 4.533 6 H 0.096 0.904 7 C 0.017 3.983 8 N -0.931 5.931 9 Si 0.936 3.064 10 H -0.263 1.263 11 H -0.299 1.299 12 H -0.262 1.262 13 S 2.801 3.199 14 O -1.003 7.003 15 O -1.019 7.019 16 N -1.091 6.091 17 C 0.134 3.866 18 C -0.121 4.121 19 C -0.103 4.103 20 C 0.492 3.508 21 O -0.551 6.551 22 O -0.510 6.510 23 C -0.126 4.126 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.261 0.739 32 H 0.426 0.574 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.158 0.842 37 H 0.424 0.576 38 H 0.077 0.923 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.761 -9.500 10.082 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.835 5.835 4 C 0.133 3.867 5 C -0.572 4.572 6 H 0.114 0.886 7 C -0.182 4.182 8 N -0.572 5.572 9 Si 0.762 3.238 10 H -0.187 1.187 11 H -0.225 1.225 12 H -0.187 1.187 13 S 2.809 3.191 14 O -0.987 6.987 15 O -1.002 7.002 16 N -0.852 5.852 17 C 0.026 3.974 18 C -0.160 4.160 19 C -0.122 4.122 20 C 0.336 3.664 21 O -0.442 6.442 22 O -0.323 6.323 23 C -0.166 4.166 24 H 0.108 0.892 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.262 0.738 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.175 0.825 37 H 0.286 0.714 38 H 0.096 0.904 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.848 -8.511 10.419 14.670 hybrid contribution 1.603 -0.075 -1.170 1.986 sum 7.451 -8.586 9.249 14.656 Atomic orbital electron populations 1.22205 0.96364 1.03093 1.01187 1.21251 0.94307 0.81236 1.03518 1.57580 1.79214 1.24045 1.22640 1.18765 0.96844 0.90765 0.80279 1.22131 1.02534 1.27137 1.05437 0.88597 1.25642 0.99745 0.95047 0.97792 1.70064 1.37899 1.31606 1.17584 0.85971 0.81245 0.78807 0.77777 1.18747 1.22529 1.18685 1.01114 0.73114 0.72687 0.72160 1.93541 1.71023 1.76094 1.58049 1.93541 1.86624 1.33888 1.86166 1.55379 1.23700 1.68034 1.38104 1.21492 0.88385 0.96239 0.91309 1.23308 0.94479 0.94910 1.03351 1.22716 0.86133 1.01189 1.02146 1.23630 0.90894 0.80246 0.71614 1.90697 1.64317 1.38772 1.50399 1.84529 1.34119 1.33493 1.80157 1.23422 0.95685 1.01532 0.95922 0.89227 0.93537 0.93608 0.89929 0.89221 0.96373 0.96597 0.93024 0.73797 0.88968 0.87798 0.88940 0.82453 0.71442 0.90399 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.86 10.24 71.98 0.74 -4.13 16 2 C 0.12 3.71 6.06 86.38 0.52 4.23 16 3 N -0.99 -37.22 2.82 -519.85 -1.47 -38.68 16 4 C 0.26 12.10 5.44 85.64 0.47 12.57 16 5 C -0.53 -25.06 7.79 25.60 0.20 -24.86 16 6 H 0.10 3.98 4.50 -2.91 -0.01 3.96 16 7 C 0.02 0.86 5.46 84.65 0.46 1.32 16 8 N -0.93 -52.38 13.29 21.45 0.28 -52.09 16 9 Si 0.94 39.96 28.89 68.60 1.98 41.94 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 11 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.26 -10.62 6.61 99.48 0.66 -9.96 16 13 S 2.80 100.97 6.07 -56.49 -0.34 100.63 16 14 O -1.00 -36.46 17.11 -128.00 -2.19 -38.65 16 15 O -1.02 -45.96 16.21 -128.00 -2.08 -48.03 16 16 N -1.09 -29.66 5.79 -166.95 -0.97 -30.62 16 17 C 0.13 4.02 3.65 45.58 0.17 4.19 16 18 C -0.12 -2.99 7.18 31.12 0.22 -2.77 16 19 C -0.10 -2.23 4.08 -11.01 -0.04 -2.27 16 20 C 0.49 11.83 7.85 71.24 0.56 12.39 16 21 O -0.55 -16.89 16.67 21.98 0.37 -16.52 16 22 O -0.51 -9.34 13.42 -51.46 -0.69 -10.03 16 23 C -0.13 -3.47 5.26 31.18 0.16 -3.31 16 24 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 2.47 8.11 -2.39 -0.02 2.45 16 28 H 0.09 2.25 7.61 -2.39 -0.02 2.23 16 29 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 30 H 0.02 0.86 6.91 -2.39 -0.02 0.85 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.43 8.19 8.80 -96.75 -0.85 7.34 16 33 H 0.09 3.51 7.08 -2.39 -0.02 3.49 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 2.58 7.45 -2.39 -0.02 2.56 16 36 H 0.16 2.28 8.12 -2.39 -0.02 2.26 16 37 H 0.42 4.24 9.10 -74.06 -0.67 3.57 16 38 H 0.08 2.50 6.90 -2.39 -0.02 2.48 16 39 H 0.10 2.56 7.50 -2.39 -0.02 2.54 16 Total: -1.00 -70.16 335.16 -2.12 -72.29 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.48 Total: 22.42 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 3.46 Total: -2.64 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -2.15 Total: -121.40 kcal Atomic # 8 Polarization: -108.64 SS G_CDS: -4.59 Total: -113.23 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.98 Total: 41.94 kcal Atomic # 16 Polarization: 100.97 SS G_CDS: -0.34 Total: 100.63 kcal Total: -70.16 -2.12 -72.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596300314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.695 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds