Wall clock time and date at job start Fri Apr 10 2020 14:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.46497 * 120.00293 * 60.00238 * 12 2 1 14 14 S 1.65602 * 119.99856 * 239.99526 * 12 2 1 15 15 O 1.42101 * 106.40175 * 203.54475 * 14 12 2 16 16 O 1.42098 * 106.40534 * 336.46506 * 14 12 2 17 17 N 1.65602 * 107.21891 * 90.00572 * 14 12 2 18 18 C 1.46499 * 120.00018 * 64.99352 * 17 14 12 19 19 H 1.09004 * 112.85063 * 346.20529 * 18 17 14 20 20 C 1.53786 * 113.61027 * 117.50672 * 18 17 14 21 21 C 1.53782 * 87.07954 * 139.98697 * 20 18 17 22 22 H 1.08994 * 113.69331 * 89.12783 * 21 20 18 23 23 C 1.50701 * 113.61121 * 220.02017 * 21 20 18 24 24 O 1.20833 * 120.00158 * 97.49639 * 23 21 20 25 25 O 1.34232 * 120.00095 * 277.49652 * 23 21 20 26 26 C 1.53779 * 113.61790 * 215.00117 * 18 17 14 27 27 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 28 28 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 29 29 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47299 * 89.99680 * 13 12 2 32 32 H 1.09003 * 109.47539 * 209.99447 * 13 12 2 33 33 H 1.08994 * 109.47071 * 329.99887 * 13 12 2 34 34 H 0.97001 * 120.00106 * 245.00798 * 17 14 12 35 35 H 1.08997 * 113.61291 * 254.53047 * 20 18 17 36 36 H 1.08995 * 113.61410 * 25.43435 * 20 18 17 37 37 H 0.96699 * 116.99990 * 180.02562 * 25 23 21 38 38 H 1.08993 * 113.61522 * 334.57904 * 26 18 17 39 39 H 1.09004 * 113.60797 * 105.38851 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8093 3.3998 18 6 1.1507 -0.0349 4.2817 19 1 1.1151 -1.0748 3.9568 20 6 1.4835 0.1352 5.7734 21 6 -0.0285 0.0483 6.0399 22 1 -0.3877 -0.9687 6.1974 23 6 -0.5118 1.0096 7.0951 24 8 -1.0028 2.0651 6.7715 25 8 -0.3966 0.6933 8.3945 26 6 -0.2314 0.5578 4.6032 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7173 1.1669 -3.4844 31 1 2.4156 -2.7377 0.9720 32 1 1.6236 -2.2851 2.5004 33 1 0.6904 -2.3001 0.9848 34 1 1.9053 1.7753 3.4681 35 1 2.0492 -0.6970 6.1923 36 1 1.9146 1.1063 6.0166 37 1 -0.7210 1.3415 9.0345 38 1 -0.2691 1.6443 4.5264 39 1 -1.0499 0.0675 4.0761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:33 Heat of formation + Delta-G solvation = -145.908870 kcal Electronic energy + Delta-G solvation = -24233.692926 eV Core-core repulsion = 20497.024114 eV Total energy + Delta-G solvation = -3736.668812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91422 -38.69484 -36.65529 -36.31576 -36.17535 -35.24163 -32.97860 -32.58853 -29.12193 -26.67959 -25.97211 -25.61860 -25.13685 -22.11592 -20.86299 -19.97530 -18.91248 -18.38852 -17.44974 -17.14728 -16.84627 -16.32570 -16.05452 -15.43796 -15.16045 -14.93520 -14.36063 -13.58939 -13.48103 -13.15306 -13.12015 -12.79543 -12.73465 -12.40061 -12.05326 -11.82366 -11.79498 -11.52723 -11.43801 -11.36144 -11.21348 -11.10327 -11.04798 -10.99126 -10.80724 -10.58362 -10.42961 -10.27624 -10.03105 -9.37193 -9.23163 -8.46481 -7.99448 -6.07686 -4.14204 1.17430 1.91796 2.75765 3.27651 3.36030 3.39672 3.48045 4.03897 4.09353 4.23334 4.40050 4.55057 4.57753 4.91606 5.03495 5.08199 5.24076 5.44836 5.48784 5.54125 5.63613 5.72157 5.78936 6.07391 6.17830 6.24727 6.37594 6.59899 6.76472 6.78222 7.00684 7.10102 7.46545 7.62488 7.63005 7.78528 8.03798 8.27122 8.88439 9.51831 10.98034 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.003827 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.327478 B = 7313.771613 C = 7735.523268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.989 5.989 13 C 0.108 3.892 14 S 2.776 3.224 15 O -0.995 6.995 16 O -0.973 6.973 17 N -1.119 6.119 18 C 0.138 3.862 19 H 0.118 0.882 20 C -0.133 4.133 21 C -0.113 4.113 22 H 0.130 0.870 23 C 0.490 3.510 24 O -0.513 6.513 25 O -0.516 6.516 26 C -0.126 4.126 27 H 0.012 0.988 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.408 0.592 38 H 0.104 0.896 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 -2.571 18.088 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.785 3.215 15 O -0.978 6.978 16 O -0.957 6.957 17 N -0.875 5.875 18 C 0.029 3.971 19 H 0.135 0.865 20 C -0.173 4.173 21 C -0.133 4.133 22 H 0.148 0.852 23 C 0.332 3.668 24 O -0.401 6.401 25 O -0.328 6.328 26 C -0.165 4.165 27 H 0.031 0.969 28 H 0.110 0.890 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.247 0.753 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.267 0.733 38 H 0.122 0.878 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.429 -2.597 17.531 18.051 hybrid contribution -0.501 0.406 -0.360 0.739 sum -3.930 -2.191 17.170 17.750 Atomic orbital electron populations 1.22113 0.98223 0.99668 1.00700 1.18743 0.91304 0.93009 0.80453 0.92318 1.21372 1.31583 1.12911 0.90039 0.91898 1.24910 0.94990 0.95001 0.99027 1.69866 1.36658 1.22671 1.23678 0.86445 0.78609 0.79651 0.82715 1.19739 1.21017 1.20924 1.57697 1.69999 1.19717 1.35843 1.21194 1.01917 0.82281 0.98449 1.02058 0.73686 0.73277 0.72443 1.93547 1.68996 1.60709 1.74522 1.93620 1.74311 1.55989 1.71818 1.56253 1.61518 1.17226 1.52496 1.22039 0.90779 0.95284 0.88949 0.86472 1.23483 0.92580 1.04278 0.96969 1.22387 0.99406 0.99436 0.92032 0.85247 1.23328 0.74543 0.86465 0.82428 1.90735 1.41403 1.25472 1.82461 1.84561 1.77955 1.52402 1.17883 1.23432 0.98111 1.03399 0.91541 0.96903 0.88954 0.94792 0.92760 0.93151 0.93523 0.90852 0.75281 0.89145 0.88893 0.73347 0.87787 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.95 37.16 0.33 -2.89 16 2 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.78 8.37 -34.44 -0.29 -14.07 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 7 N -0.89 -24.56 11.33 55.43 0.63 -23.93 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 N -0.99 -19.53 3.12 -115.85 -0.36 -19.89 16 13 C 0.11 1.79 9.51 59.85 0.57 2.36 16 14 S 2.78 51.87 6.04 -107.50 -0.65 51.22 16 15 O -0.99 -19.59 16.97 -57.17 -0.97 -20.56 16 16 O -0.97 -22.20 16.70 -57.17 -0.95 -23.16 16 17 N -1.12 -15.38 5.84 -4.20 -0.02 -15.40 16 18 C 0.14 1.52 4.38 -67.12 -0.29 1.23 16 19 H 0.12 1.20 6.38 -51.93 -0.33 0.86 16 20 C -0.13 -1.23 7.43 -25.92 -0.19 -1.43 16 21 C -0.11 -0.95 4.26 -90.96 -0.39 -1.33 16 22 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 23 C 0.49 4.72 7.85 36.01 0.28 5.01 16 24 O -0.51 -6.61 16.66 -18.76 -0.31 -6.92 16 25 O -0.52 -3.74 13.42 -39.26 -0.53 -4.27 16 26 C -0.13 -1.24 7.19 -25.92 -0.19 -1.43 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 2.28 6.08 -51.93 -0.32 1.96 16 29 H 0.03 0.69 6.66 -51.93 -0.35 0.35 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.61 6.15 -51.93 -0.32 0.29 16 33 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 34 H 0.41 5.10 8.94 -34.47 -0.31 4.79 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.41 1.32 9.10 45.56 0.41 1.73 16 38 H 0.10 1.15 7.43 -51.93 -0.39 0.77 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -34.63 335.64 -7.93 -42.56 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.35 Total: 4.10 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.44 Total: -4.77 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.24 Total: -59.22 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -2.76 Total: -54.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.65 Total: 51.22 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.63 -7.93 -42.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.347 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds