Wall clock time and date at job start Fri Apr 10 2020 14:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.46497 * 120.00293 * 60.00238 * 12 2 1 14 14 S 1.65602 * 119.99856 * 239.99526 * 12 2 1 15 15 O 1.42101 * 106.40175 * 203.54475 * 14 12 2 16 16 O 1.42098 * 106.40534 * 336.46506 * 14 12 2 17 17 N 1.65602 * 107.21891 * 90.00572 * 14 12 2 18 18 C 1.46499 * 120.00018 * 64.99352 * 17 14 12 19 19 H 1.09004 * 112.85063 * 346.20529 * 18 17 14 20 20 C 1.53786 * 113.61027 * 117.50672 * 18 17 14 21 21 C 1.53782 * 87.07954 * 139.98697 * 20 18 17 22 22 H 1.08994 * 113.69331 * 89.12783 * 21 20 18 23 23 C 1.50701 * 113.61121 * 220.02017 * 21 20 18 24 24 O 1.20833 * 120.00158 * 97.49639 * 23 21 20 25 25 O 1.34232 * 120.00095 * 277.49652 * 23 21 20 26 26 C 1.53779 * 113.61790 * 215.00117 * 18 17 14 27 27 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 28 28 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 29 29 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47299 * 89.99680 * 13 12 2 32 32 H 1.09003 * 109.47539 * 209.99447 * 13 12 2 33 33 H 1.08994 * 109.47071 * 329.99887 * 13 12 2 34 34 H 0.97001 * 120.00106 * 245.00798 * 17 14 12 35 35 H 1.08997 * 113.61291 * 254.53047 * 20 18 17 36 36 H 1.08995 * 113.61410 * 25.43435 * 20 18 17 37 37 H 0.96699 * 116.99990 * 180.02562 * 25 23 21 38 38 H 1.08993 * 113.61522 * 334.57904 * 26 18 17 39 39 H 1.09004 * 113.60797 * 105.38851 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8093 3.3998 18 6 1.1507 -0.0349 4.2817 19 1 1.1151 -1.0748 3.9568 20 6 1.4835 0.1352 5.7734 21 6 -0.0285 0.0483 6.0399 22 1 -0.3877 -0.9687 6.1974 23 6 -0.5118 1.0096 7.0951 24 8 -1.0028 2.0651 6.7715 25 8 -0.3966 0.6933 8.3945 26 6 -0.2314 0.5578 4.6032 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7173 1.1669 -3.4844 31 1 2.4156 -2.7377 0.9720 32 1 1.6236 -2.2851 2.5004 33 1 0.6904 -2.3001 0.9848 34 1 1.9053 1.7753 3.4681 35 1 2.0492 -0.6970 6.1923 36 1 1.9146 1.1063 6.0166 37 1 -0.7210 1.3415 9.0345 38 1 -0.2691 1.6443 4.5264 39 1 -1.0499 0.0675 4.0761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:32 Heat of formation + Delta-G solvation = -173.658031 kcal Electronic energy + Delta-G solvation = -24234.896220 eV Core-core repulsion = 20497.024114 eV Total energy + Delta-G solvation = -3737.872106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65558 -39.48460 -38.25320 -37.84900 -37.02486 -36.84780 -34.51020 -34.03454 -30.88649 -27.49833 -27.25217 -26.94471 -26.69218 -22.92105 -22.58670 -20.86819 -20.17173 -19.16276 -18.79426 -18.53399 -18.13546 -17.94726 -17.03522 -16.81124 -16.40377 -15.94862 -15.75380 -15.13694 -14.83891 -14.58469 -14.19412 -13.91288 -13.70097 -13.56902 -13.48298 -13.35299 -13.15076 -13.11654 -12.96791 -12.78830 -12.55539 -12.54693 -12.31128 -12.14471 -12.13166 -12.00250 -11.93136 -11.76674 -11.33729 -11.10187 -10.49770 -10.38464 -9.62774 -8.10041 -6.23283 -0.29464 1.19535 1.42030 1.45387 1.55490 1.99722 2.25157 2.44937 2.67899 3.18518 3.35002 3.44426 3.49764 3.75393 3.83377 4.04561 4.32144 4.48496 4.69114 4.72740 4.76018 4.77509 4.88547 4.98769 5.03177 5.05912 5.09228 5.18653 5.25427 5.44044 5.64539 5.65231 5.74143 5.91447 6.05879 6.21280 6.33705 6.85151 7.02626 7.45874 8.94069 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.003827 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.327478 B = 7313.771613 C = 7735.523268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.023 0.977 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.996 5.996 13 C 0.100 3.900 14 S 2.794 3.206 15 O -1.004 7.004 16 O -1.022 7.022 17 N -1.106 6.106 18 C 0.122 3.878 19 H 0.131 0.869 20 C -0.130 4.130 21 C -0.102 4.102 22 H 0.161 0.839 23 C 0.494 3.506 24 O -0.552 6.552 25 O -0.510 6.510 26 C -0.126 4.126 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.421 0.579 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.426 0.574 38 H 0.088 0.912 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 -4.180 19.672 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.838 5.838 13 C -0.046 4.046 14 S 2.803 3.197 15 O -0.987 6.987 16 O -1.006 7.006 17 N -0.866 5.866 18 C 0.015 3.985 19 H 0.149 0.851 20 C -0.170 4.170 21 C -0.122 4.122 22 H 0.179 0.821 23 C 0.338 3.662 24 O -0.443 6.443 25 O -0.323 6.323 26 C -0.166 4.166 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.256 0.744 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.287 0.713 38 H 0.107 0.893 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.152 -4.234 19.151 20.048 hybrid contribution -0.274 0.913 -0.702 1.184 sum -4.426 -3.321 18.449 19.261 Atomic orbital electron populations 1.21895 0.96637 1.00348 1.00477 1.18389 0.92365 0.91241 0.81188 0.95934 1.21702 1.31500 1.12864 0.91522 0.92532 1.25628 0.95308 0.95710 1.01660 1.69984 1.37474 1.23681 1.24201 0.85568 0.78252 0.78580 0.79580 1.19388 1.20018 1.21225 1.57552 1.69954 1.21092 1.35181 1.21438 1.01851 0.80235 1.01053 1.01303 0.73644 0.72390 0.72334 1.93527 1.69632 1.61081 1.74476 1.93550 1.76016 1.57612 1.73428 1.55834 1.61363 1.17856 1.51587 1.22477 0.91139 0.95523 0.89400 0.85143 1.23464 0.93474 1.04714 0.95342 1.22420 0.98519 1.00546 0.90673 0.82142 1.23512 0.73588 0.85844 0.83219 1.90733 1.43361 1.27099 1.83125 1.84519 1.77512 1.52945 1.17360 1.23391 0.97630 1.02580 0.92961 0.94339 0.91883 0.93543 0.92733 0.94198 0.89644 0.90133 0.74415 0.87642 0.89363 0.71293 0.89346 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.95 71.98 0.64 -5.14 16 2 C 0.27 13.07 2.62 44.25 0.12 13.19 16 3 H 0.02 1.25 6.91 -2.39 -0.02 1.24 16 4 C -0.54 -28.71 8.37 25.60 0.21 -28.49 16 5 H 0.06 3.02 7.65 -2.91 -0.02 2.99 16 6 C 0.02 0.90 5.31 84.65 0.45 1.35 16 7 N -0.91 -51.18 11.33 21.45 0.24 -50.94 16 8 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 N -1.00 -38.61 3.12 -520.45 -1.62 -40.24 16 13 C 0.10 3.10 9.51 127.77 1.21 4.32 16 14 S 2.79 103.17 6.04 -56.49 -0.34 102.83 16 15 O -1.00 -38.23 16.97 -128.00 -2.17 -40.40 16 16 O -1.02 -47.78 16.70 -128.00 -2.14 -49.92 16 17 N -1.11 -29.11 5.84 -167.19 -0.98 -30.09 16 18 C 0.12 2.37 4.38 45.52 0.20 2.57 16 19 H 0.13 2.18 6.38 -2.39 -0.02 2.17 16 20 C -0.13 -2.04 7.43 31.12 0.23 -1.81 16 21 C -0.10 -1.39 4.26 -11.01 -0.05 -1.44 16 22 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 23 C 0.49 8.40 7.85 71.24 0.56 8.95 16 24 O -0.55 -13.59 16.66 21.94 0.37 -13.22 16 25 O -0.51 -5.96 13.42 -51.44 -0.69 -6.65 16 26 C -0.13 -2.20 7.19 31.12 0.22 -1.98 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 3.12 6.08 -2.38 -0.01 3.11 16 29 H 0.05 1.84 6.66 -2.39 -0.02 1.82 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.97 6.15 -2.39 -0.01 1.95 16 33 H 0.08 2.39 6.43 -2.39 -0.02 2.37 16 34 H 0.42 10.17 8.94 -96.74 -0.87 9.30 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 37 H 0.43 1.70 9.10 -74.06 -0.67 1.03 16 38 H 0.09 1.86 7.43 -2.39 -0.02 1.84 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -75.43 335.64 -1.94 -77.37 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.44 Total: 14.55 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 3.80 Total: -8.47 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -2.36 Total: -121.26 kcal Atomic # 8 Polarization: -105.56 SS G_CDS: -4.63 Total: -110.20 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 103.17 SS G_CDS: -0.34 Total: 102.83 kcal Total: -75.43 -1.94 -77.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.290 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds