Wall clock time and date at job start Fri Apr 10 2020 14:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47345 * 2 1 4 4 C 1.50701 * 109.47247 * 120.00374 * 2 1 3 5 5 H 1.08003 * 119.99688 * 120.00058 * 4 2 1 6 6 C 1.37877 * 119.99819 * 299.99702 * 4 2 1 7 7 N 1.31512 * 119.99986 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99638 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47109 * 60.00752 * 8 6 4 10 10 H 1.48504 * 109.46913 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47104 * 300.00350 * 8 6 4 12 12 N 1.46498 * 109.47173 * 240.00388 * 2 1 3 13 13 C 1.46501 * 120.00048 * 300.00095 * 12 2 1 14 14 S 1.65607 * 119.99832 * 119.99784 * 12 2 1 15 15 O 1.42102 * 106.40045 * 156.46269 * 14 12 2 16 16 O 1.42092 * 106.40344 * 23.54002 * 14 12 2 17 17 N 1.65602 * 107.21684 * 269.99759 * 14 12 2 18 18 C 1.46496 * 119.99730 * 65.00475 * 17 14 12 19 19 H 1.09004 * 112.90889 * 346.24639 * 18 17 14 20 20 C 1.53784 * 113.61524 * 117.49997 * 18 17 14 21 21 C 1.53778 * 87.08081 * 139.98080 * 20 18 17 22 22 H 1.09004 * 113.61886 * 89.12045 * 21 20 18 23 23 C 1.50698 * 113.61544 * 220.01985 * 21 20 18 24 24 O 1.20827 * 120.00542 * 97.49665 * 23 21 20 25 25 O 1.34238 * 119.99938 * 277.50006 * 23 21 20 26 26 C 1.53778 * 87.08449 * 334.56700 * 21 20 18 27 27 H 1.08999 * 109.47009 * 59.99477 * 1 2 3 28 28 H 1.09007 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47148 * 299.99407 * 1 2 3 30 30 H 0.96999 * 120.00005 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46977 * 269.99439 * 13 12 2 32 32 H 1.08996 * 109.47002 * 29.99915 * 13 12 2 33 33 H 1.08999 * 109.47250 * 149.99885 * 13 12 2 34 34 H 0.97004 * 120.00256 * 245.00146 * 17 14 12 35 35 H 1.08993 * 113.61313 * 254.52676 * 20 18 17 36 36 H 1.09000 * 113.61578 * 25.43408 * 20 18 17 37 37 H 0.96703 * 116.99511 * 179.97438 * 25 23 21 38 38 H 1.08998 * 113.61879 * 270.88747 * 26 21 20 39 39 H 1.08999 * 113.61887 * 139.97854 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.8064 -1.1211 4.0080 10 1 1.8261 -0.4209 5.2204 11 1 1.8259 -2.5204 4.0075 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1144 -2.2862 15 8 3.7118 -0.8786 -2.9816 16 8 3.5793 1.1831 -1.5748 17 7 1.9606 0.8093 -3.3998 18 6 1.0291 1.8620 -2.9874 19 1 0.9221 1.9338 -1.9050 20 6 1.2859 3.2148 -3.6722 21 6 -0.2412 3.3615 -3.7792 22 1 -0.6954 3.8433 -2.9134 23 6 -0.7007 3.9521 -5.0873 24 8 -1.0775 3.2279 -5.9780 25 8 -0.6913 5.2829 -5.2629 26 6 -0.3128 1.8259 -3.7378 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.7082 1.1607 3.4844 31 1 2.4158 -2.7376 -0.9719 32 1 0.6904 -2.3001 -0.9848 33 1 1.6238 -2.2850 -2.5003 34 1 1.9860 0.5193 -4.3251 35 1 1.7507 3.9534 -3.0192 36 1 1.7849 3.1279 -4.6374 37 1 -0.9947 5.6149 -6.1190 38 1 -0.2508 1.3592 -4.7209 39 1 -1.1384 1.4433 -3.1379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:35 Heat of formation + Delta-G solvation = -146.910965 kcal Electronic energy + Delta-G solvation = -24454.812274 eV Core-core repulsion = 20718.100009 eV Total energy + Delta-G solvation = -3736.712266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82843 -38.60016 -36.66576 -36.24438 -36.18002 -35.22894 -32.93114 -32.59920 -29.13938 -26.58268 -25.86595 -25.61322 -25.16850 -22.03205 -20.81958 -19.91101 -18.86567 -18.33099 -17.41479 -17.16522 -16.77529 -16.25002 -16.00647 -15.48265 -15.01074 -14.87979 -14.37003 -13.64894 -13.33611 -13.21341 -12.99603 -12.80555 -12.60238 -12.38986 -11.97159 -11.76360 -11.75146 -11.49780 -11.42352 -11.28192 -11.24275 -11.00518 -10.98855 -10.96896 -10.81840 -10.50490 -10.45811 -10.30918 -10.03209 -9.36837 -9.24450 -8.47581 -8.00778 -6.10333 -4.16294 1.17955 1.99188 2.84286 3.29395 3.33690 3.37179 3.50648 4.07513 4.20151 4.33321 4.38760 4.68056 4.73497 4.98730 5.16654 5.20972 5.27752 5.54853 5.57322 5.61911 5.72577 5.82591 5.86935 6.14518 6.25757 6.32595 6.41000 6.59299 6.70709 6.75618 6.93886 7.11425 7.44654 7.59939 7.69936 7.75463 8.00196 8.24415 8.85580 9.49715 10.95415 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.004494 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.567864 B = 6228.473050 C = 7021.884168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.266 3.734 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.776 3.224 15 O -0.997 6.997 16 O -0.972 6.972 17 N -1.120 6.120 18 C 0.137 3.863 19 H 0.127 0.873 20 C -0.134 4.134 21 C -0.113 4.113 22 H 0.132 0.868 23 C 0.492 3.508 24 O -0.517 6.517 25 O -0.515 6.515 26 C -0.125 4.125 27 H 0.012 0.988 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.410 0.590 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.407 0.593 38 H 0.101 0.899 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 4.945 -12.870 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.035 4.035 14 S 2.785 3.215 15 O -0.981 6.981 16 O -0.955 6.955 17 N -0.875 5.875 18 C 0.028 3.972 19 H 0.145 0.855 20 C -0.173 4.173 21 C -0.133 4.133 22 H 0.150 0.850 23 C 0.335 3.665 24 O -0.405 6.405 25 O -0.326 6.326 26 C -0.164 4.164 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.243 0.757 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.265 0.735 38 H 0.119 0.881 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.937 4.817 -12.377 13.853 hybrid contribution -0.435 -0.338 -0.128 0.566 sum -4.372 4.479 -12.505 13.984 Atomic orbital electron populations 1.22181 0.98262 0.99987 1.00611 1.18761 0.91254 0.92967 0.80732 0.92350 1.21288 1.31622 1.13029 0.90024 0.92007 1.24885 0.94926 0.94991 0.98967 1.69826 1.36511 1.22716 1.23923 0.86559 0.79377 0.79594 0.81890 1.20161 1.21224 1.20262 1.57691 1.70045 1.19951 1.35658 1.21127 1.01637 0.81934 0.98825 1.02080 0.73607 0.73216 0.72587 1.93551 1.69622 1.60111 1.74796 1.93607 1.73712 1.55837 1.72351 1.56216 1.56431 1.50913 1.23986 1.22142 0.88689 0.86151 1.00211 0.85501 1.23473 0.92196 0.99047 1.02619 1.22389 0.99550 0.97657 0.93704 0.84980 1.23355 0.73444 0.79791 0.89911 1.90709 1.44217 1.61432 1.44169 1.84583 1.79830 1.24984 1.43218 1.23418 0.98532 0.91941 1.02539 0.96912 0.94639 0.88795 0.92634 0.93330 0.90978 0.93279 0.75727 0.88937 0.89106 0.73460 0.88108 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.92 37.16 0.33 -2.82 16 2 C 0.27 6.11 2.15 -69.08 -0.15 5.96 16 3 H 0.06 1.47 6.67 -51.93 -0.35 1.13 16 4 C -0.52 -13.57 8.37 -34.44 -0.29 -13.86 16 5 H 0.06 1.62 7.65 -52.48 -0.40 1.22 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.84 11.32 55.43 0.63 -23.22 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 N -0.99 -19.55 3.12 -115.85 -0.36 -19.91 16 13 C 0.11 1.92 9.53 59.85 0.57 2.49 16 14 S 2.78 51.98 6.04 -107.50 -0.65 51.33 16 15 O -1.00 -20.22 17.21 -57.17 -0.98 -21.20 16 16 O -0.97 -21.67 16.46 -57.17 -0.94 -22.61 16 17 N -1.12 -15.47 5.84 -4.20 -0.02 -15.49 16 18 C 0.14 1.75 4.32 -67.12 -0.29 1.46 16 19 H 0.13 1.83 6.44 -51.93 -0.33 1.50 16 20 C -0.13 -1.47 7.43 -25.92 -0.19 -1.66 16 21 C -0.11 -1.14 4.26 -90.96 -0.39 -1.52 16 22 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 23 C 0.49 5.22 7.85 36.00 0.28 5.50 16 24 O -0.52 -6.88 16.66 -18.75 -0.31 -7.20 16 25 O -0.51 -4.27 13.42 -39.28 -0.53 -4.79 16 26 C -0.13 -1.36 7.19 -25.92 -0.19 -1.55 16 27 H 0.01 0.21 7.23 -51.93 -0.38 -0.16 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 29 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 33 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 34 H 0.41 4.66 8.94 -34.48 -0.31 4.35 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.41 1.64 9.10 45.56 0.41 2.05 16 38 H 0.10 1.11 7.44 -51.93 -0.39 0.73 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -33.46 335.64 -7.92 -41.38 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.38 Total: 5.34 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.40 Total: -4.39 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.24 Total: -58.62 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -2.76 Total: -55.80 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 51.98 SS G_CDS: -0.65 Total: 51.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.46 -7.92 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.528 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds