Wall clock time and date at job start Fri Apr 10 2020 14:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47345 * 2 1 4 4 C 1.50701 * 109.47247 * 120.00374 * 2 1 3 5 5 H 1.08003 * 119.99688 * 120.00058 * 4 2 1 6 6 C 1.37877 * 119.99819 * 299.99702 * 4 2 1 7 7 N 1.31512 * 119.99986 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99638 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47109 * 60.00752 * 8 6 4 10 10 H 1.48504 * 109.46913 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47104 * 300.00350 * 8 6 4 12 12 N 1.46498 * 109.47173 * 240.00388 * 2 1 3 13 13 C 1.46501 * 120.00048 * 300.00095 * 12 2 1 14 14 S 1.65607 * 119.99832 * 119.99784 * 12 2 1 15 15 O 1.42102 * 106.40045 * 156.46269 * 14 12 2 16 16 O 1.42092 * 106.40344 * 23.54002 * 14 12 2 17 17 N 1.65602 * 107.21684 * 269.99759 * 14 12 2 18 18 C 1.46496 * 119.99730 * 65.00475 * 17 14 12 19 19 H 1.09004 * 112.90889 * 346.24639 * 18 17 14 20 20 C 1.53784 * 113.61524 * 117.49997 * 18 17 14 21 21 C 1.53778 * 87.08081 * 139.98080 * 20 18 17 22 22 H 1.09004 * 113.61886 * 89.12045 * 21 20 18 23 23 C 1.50698 * 113.61544 * 220.01985 * 21 20 18 24 24 O 1.20827 * 120.00542 * 97.49665 * 23 21 20 25 25 O 1.34238 * 119.99938 * 277.50006 * 23 21 20 26 26 C 1.53778 * 87.08449 * 334.56700 * 21 20 18 27 27 H 1.08999 * 109.47009 * 59.99477 * 1 2 3 28 28 H 1.09007 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47148 * 299.99407 * 1 2 3 30 30 H 0.96999 * 120.00005 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46977 * 269.99439 * 13 12 2 32 32 H 1.08996 * 109.47002 * 29.99915 * 13 12 2 33 33 H 1.08999 * 109.47250 * 149.99885 * 13 12 2 34 34 H 0.97004 * 120.00256 * 245.00146 * 17 14 12 35 35 H 1.08993 * 113.61313 * 254.52676 * 20 18 17 36 36 H 1.09000 * 113.61578 * 25.43408 * 20 18 17 37 37 H 0.96703 * 116.99511 * 179.97438 * 25 23 21 38 38 H 1.08998 * 113.61879 * 270.88747 * 26 21 20 39 39 H 1.08999 * 113.61887 * 139.97854 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.8064 -1.1211 4.0080 10 1 1.8261 -0.4209 5.2204 11 1 1.8259 -2.5204 4.0075 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1144 -2.2862 15 8 3.7118 -0.8786 -2.9816 16 8 3.5793 1.1831 -1.5748 17 7 1.9606 0.8093 -3.3998 18 6 1.0291 1.8620 -2.9874 19 1 0.9221 1.9338 -1.9050 20 6 1.2859 3.2148 -3.6722 21 6 -0.2412 3.3615 -3.7792 22 1 -0.6954 3.8433 -2.9134 23 6 -0.7007 3.9521 -5.0873 24 8 -1.0775 3.2279 -5.9780 25 8 -0.6913 5.2829 -5.2629 26 6 -0.3128 1.8259 -3.7378 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.7082 1.1607 3.4844 31 1 2.4158 -2.7376 -0.9719 32 1 0.6904 -2.3001 -0.9848 33 1 1.6238 -2.2850 -2.5003 34 1 1.9860 0.5193 -4.3251 35 1 1.7507 3.9534 -3.0192 36 1 1.7849 3.1279 -4.6374 37 1 -0.9947 5.6149 -6.1190 38 1 -0.2508 1.3592 -4.7209 39 1 -1.1384 1.4433 -3.1379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:34 Heat of formation + Delta-G solvation = -173.263194 kcal Electronic energy + Delta-G solvation = -24455.954993 eV Core-core repulsion = 20718.100009 eV Total energy + Delta-G solvation = -3737.854984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66515 -39.50281 -38.26271 -37.84318 -37.02332 -36.84980 -34.48950 -34.05624 -30.86612 -27.50141 -27.23848 -26.97161 -26.71574 -22.95055 -22.53548 -20.89257 -20.17648 -19.16888 -18.84173 -18.49527 -18.07859 -18.00657 -17.01380 -16.78673 -16.44836 -15.96953 -15.71867 -15.23432 -14.81516 -14.54508 -14.21446 -13.88742 -13.75694 -13.56242 -13.48423 -13.31932 -13.14163 -13.09663 -12.96263 -12.75074 -12.56359 -12.53883 -12.24094 -12.21710 -12.11891 -12.01648 -11.93893 -11.77491 -11.35248 -11.10939 -10.47874 -10.38935 -9.63983 -8.08573 -6.20593 -0.30643 1.18300 1.44993 1.46812 1.53321 1.99275 2.24529 2.46210 2.67207 3.20105 3.33729 3.42843 3.47609 3.74302 3.88679 4.08574 4.27831 4.47472 4.70017 4.72252 4.73420 4.75298 4.87817 4.95084 4.99071 5.08085 5.11596 5.18821 5.22205 5.40402 5.63699 5.66360 5.75458 5.93506 6.13010 6.22128 6.36458 6.85896 7.02872 7.47889 8.94985 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.004494 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.567864 B = 6228.473050 C = 7021.884168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.271 3.729 3 H 0.032 0.968 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.281 1.281 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.997 5.997 13 C 0.105 3.895 14 S 2.793 3.207 15 O -1.014 7.014 16 O -1.012 7.012 17 N -1.101 6.101 18 C 0.121 3.879 19 H 0.110 0.890 20 C -0.131 4.131 21 C -0.108 4.108 22 H 0.149 0.851 23 C 0.500 3.500 24 O -0.547 6.547 25 O -0.511 6.511 26 C -0.116 4.116 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.264 0.736 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.424 0.576 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.426 0.574 38 H 0.102 0.898 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 5.075 -13.869 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.049 0.951 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.802 3.198 15 O -0.998 6.998 16 O -0.995 6.995 17 N -0.861 5.861 18 C 0.013 3.987 19 H 0.128 0.872 20 C -0.171 4.171 21 C -0.127 4.127 22 H 0.167 0.833 23 C 0.344 3.656 24 O -0.438 6.438 25 O -0.324 6.324 26 C -0.156 4.156 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.261 0.739 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.288 0.712 38 H 0.121 0.879 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.888 4.947 -13.398 15.095 hybrid contribution -0.127 -0.312 0.101 0.352 sum -5.015 4.635 -13.297 14.948 Atomic orbital electron populations 1.21969 0.96510 1.00324 1.00956 1.18464 0.92448 0.91444 0.80936 0.95066 1.21631 1.31670 1.13020 0.91708 0.92975 1.25525 0.95249 0.95701 1.01290 1.69929 1.37089 1.23465 1.24345 0.85758 0.78402 0.79078 0.79254 1.20730 1.20650 1.19429 1.57576 1.70014 1.21035 1.35248 1.21307 1.01595 0.80376 1.00795 1.01332 0.73514 0.72462 0.72447 1.93519 1.70567 1.60749 1.74923 1.93555 1.75095 1.57151 1.73705 1.55696 1.55937 1.50728 1.23775 1.22321 0.89792 0.86764 0.99800 0.87182 1.23461 0.93191 0.97713 1.02716 1.22375 0.98727 0.97278 0.94342 0.83333 1.23300 0.72679 0.80212 0.89443 1.90706 1.45748 1.62236 1.45083 1.84537 1.79400 1.23692 1.44767 1.23354 0.97213 0.92737 1.02257 0.93595 0.94189 0.91353 0.92630 0.94326 0.90284 0.90309 0.73931 0.88866 0.88346 0.71196 0.87943 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 8.92 71.98 0.64 -5.02 16 2 C 0.27 12.53 2.15 44.25 0.09 12.63 16 3 H 0.03 1.62 6.67 -2.39 -0.02 1.61 16 4 C -0.54 -28.49 8.37 25.60 0.21 -28.28 16 5 H 0.05 2.77 7.65 -2.91 -0.02 2.75 16 6 C 0.02 1.20 5.30 84.66 0.45 1.64 16 7 N -0.91 -49.00 11.32 21.45 0.24 -48.76 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 N -1.00 -38.90 3.12 -520.45 -1.62 -40.52 16 13 C 0.10 3.50 9.53 127.77 1.22 4.71 16 14 S 2.79 103.49 6.04 -56.49 -0.34 103.15 16 15 O -1.01 -40.31 17.21 -128.00 -2.20 -42.51 16 16 O -1.01 -45.77 16.46 -128.00 -2.11 -47.88 16 17 N -1.10 -28.86 5.84 -167.19 -0.98 -29.83 16 18 C 0.12 2.93 4.32 45.52 0.20 3.13 16 19 H 0.11 3.10 6.44 -2.39 -0.02 3.09 16 20 C -0.13 -2.65 7.43 31.12 0.23 -2.42 16 21 C -0.11 -1.91 4.26 -11.02 -0.05 -1.96 16 22 H 0.15 2.16 8.14 -2.38 -0.02 2.14 16 23 C 0.50 9.41 7.85 71.24 0.56 9.97 16 24 O -0.55 -13.46 16.66 21.96 0.37 -13.10 16 25 O -0.51 -7.12 13.42 -51.49 -0.69 -7.81 16 26 C -0.12 -2.27 7.19 31.12 0.22 -2.04 16 27 H 0.05 1.52 7.23 -2.39 -0.02 1.51 16 28 H 0.04 1.56 6.66 -2.38 -0.02 1.54 16 29 H 0.07 3.19 6.07 -2.39 -0.01 3.17 16 30 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.08 2.51 6.43 -2.39 -0.02 2.49 16 33 H 0.08 2.13 7.79 -2.39 -0.02 2.11 16 34 H 0.42 8.80 8.94 -96.74 -0.87 7.93 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 1.84 8.09 -2.39 -0.02 1.82 16 37 H 0.43 2.31 9.10 -74.06 -0.67 1.63 16 38 H 0.10 2.01 7.44 -2.39 -0.02 1.99 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -71.38 335.64 -1.97 -73.35 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.44 Total: 17.03 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 3.78 Total: -7.63 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -2.36 Total: -119.12 kcal Atomic # 8 Polarization: -106.67 SS G_CDS: -4.64 Total: -111.30 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 103.49 SS G_CDS: -0.34 Total: 103.15 kcal Total: -71.38 -1.97 -73.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.916 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds