Wall clock time and date at job start Fri Apr 10 2020 14:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00393 * 2 1 4 4 H 1.09000 * 110.56069 * 27.32476 * 3 2 1 5 5 C 1.54793 * 110.55546 * 264.48550 * 3 2 1 6 6 O 1.44429 * 104.80146 * 217.33178 * 5 3 2 7 7 C 1.44424 * 105.27378 * 40.59047 * 6 5 3 8 8 C 1.54479 * 104.80297 * 319.48931 * 7 6 5 9 9 H 1.09005 * 110.50616 * 265.19283 * 8 7 6 10 10 N 1.46497 * 110.51441 * 142.62548 * 8 7 6 11 11 S 1.65599 * 120.00110 * 98.29880 * 10 8 7 12 12 O 1.42105 * 104.27797 * 181.07392 * 11 10 8 13 13 O 1.42101 * 104.27901 * 308.93100 * 11 10 8 14 14 C 1.81397 * 104.44825 * 65.00280 * 11 10 8 15 15 C 1.53009 * 109.47235 * 179.97438 * 14 11 10 16 16 C 1.52992 * 109.47064 * 300.00294 * 15 14 11 17 17 C 1.52995 * 109.46650 * 60.00101 * 15 14 11 18 18 C 1.50697 * 109.46948 * 179.97438 * 15 14 11 19 19 H 1.07997 * 120.00322 * 0.02562 * 18 15 14 20 20 C 1.37880 * 119.99943 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99809 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00266 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.46941 * 59.99879 * 22 20 18 24 24 H 1.48495 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46812 * 300.00133 * 22 20 18 26 26 H 1.09000 * 109.47346 * 59.99433 * 1 2 3 27 27 H 1.09004 * 109.47719 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47029 * 300.00027 * 1 2 3 29 29 H 1.08997 * 110.30748 * 98.53653 * 5 3 2 30 30 H 1.08999 * 110.53323 * 336.24930 * 5 3 2 31 31 H 1.08997 * 110.37331 * 200.65050 * 7 6 5 32 32 H 1.09009 * 110.46402 * 78.36384 * 7 6 5 33 33 H 0.96999 * 119.99844 * 278.30605 * 10 8 7 34 34 H 1.09004 * 109.47032 * 299.99803 * 14 11 10 35 35 H 1.09000 * 109.47124 * 60.00075 * 14 11 10 36 36 H 1.08998 * 109.47786 * 59.99779 * 16 15 14 37 37 H 1.09005 * 109.47213 * 179.97438 * 16 15 14 38 38 H 1.09009 * 109.46944 * 299.99524 * 16 15 14 39 39 H 1.09004 * 109.47448 * 60.00057 * 17 15 14 40 40 H 1.09003 * 109.46897 * 179.97438 * 17 15 14 41 41 H 1.09001 * 109.47695 * 299.99731 * 17 15 14 42 42 H 0.97001 * 119.99986 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3377 2.0240 0.4685 5 6 2.3586 1.7453 -1.4427 6 8 3.6003 2.4722 -1.3171 7 6 4.3844 1.7238 -0.3627 8 6 3.3753 1.2901 0.7235 9 1 3.3769 1.9994 1.5512 10 7 3.6865 -0.0583 1.2043 11 16 4.5426 -0.2601 2.6074 12 8 4.6725 -1.6691 2.7391 13 8 5.6851 0.5687 2.4431 14 6 3.4560 0.4025 3.8999 15 6 4.1430 0.2709 5.2607 16 6 4.4331 -1.2041 5.5450 17 6 5.4563 1.0556 5.2469 18 6 3.2405 0.8220 6.3344 19 1 2.2735 1.2253 6.0725 20 6 3.6488 0.8103 7.6513 21 7 4.8262 0.3187 7.9703 22 14 2.5299 1.4928 8.9823 23 1 1.2549 0.7316 8.9953 24 1 3.1967 1.3652 10.3030 25 1 2.2488 2.9247 8.7065 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5776 2.3940 -1.8393 30 1 2.4914 0.8755 -2.0860 31 1 5.1598 2.3559 0.0701 32 1 4.8299 0.8495 -0.8376 33 1 3.3911 -0.8329 0.7007 34 1 3.2490 1.4533 3.6971 35 1 2.5204 -0.1568 3.9100 36 1 5.0860 -1.6023 4.7684 37 1 4.9229 -1.2978 6.5143 38 1 3.4973 -1.7631 5.5549 39 1 5.2497 2.1065 5.0443 40 1 5.9456 0.9622 6.2164 41 1 6.1094 0.6574 4.4702 42 1 5.1137 0.3108 8.8967 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416573914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:21 Heat of formation + Delta-G solvation = -154.764758 kcal Electronic energy + Delta-G solvation = -25288.293646 eV Core-core repulsion = 21589.355247 eV Total energy + Delta-G solvation = -3698.938399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09435 -37.31848 -36.53528 -36.28710 -35.32528 -34.64275 -31.68203 -29.91948 -28.30794 -26.75524 -26.63997 -25.72421 -25.24104 -23.16298 -21.33374 -19.72101 -18.90341 -17.66988 -17.40012 -16.57339 -16.03233 -15.79727 -15.57162 -15.47894 -15.08829 -14.91817 -14.73496 -14.27896 -14.12432 -13.19783 -13.02579 -12.79706 -12.51636 -12.50696 -12.11447 -12.09251 -11.82988 -11.50901 -11.43750 -11.33529 -11.07217 -11.06634 -10.95134 -10.71550 -10.41758 -10.28470 -10.17437 -10.13751 -9.92807 -9.66197 -9.60272 -9.23023 -8.69388 -8.41211 -6.04631 -4.16870 0.84699 2.96318 3.25415 3.31294 3.32411 3.46148 3.85129 4.14773 4.30726 4.38118 4.47886 4.64152 4.77608 4.87523 4.98756 5.03759 5.12297 5.20525 5.30048 5.39688 5.42784 5.45032 5.65580 5.68817 5.75869 5.94761 6.35878 6.44826 6.68877 6.78704 6.81160 6.89902 7.02544 7.23483 7.30709 7.49504 7.66230 7.97156 8.08186 8.31643 8.81195 9.48508 10.96623 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.004500 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.642301 B = 6221.052066 C = 6695.843617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.047 3.953 4 H 0.089 0.911 5 C 0.024 3.976 6 O -0.367 6.367 7 C 0.031 3.969 8 C 0.124 3.876 9 H 0.107 0.893 10 N -1.108 6.108 11 S 2.592 3.408 12 O -0.962 6.962 13 O -0.963 6.963 14 C -0.582 4.582 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.503 4.503 19 H 0.057 0.943 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.420 0.580 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.028 0.972 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 1.866 -16.134 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.287 6.287 3 C -0.014 4.014 4 H 0.107 0.893 5 C -0.053 4.053 6 O -0.285 6.285 7 C -0.047 4.047 8 C 0.015 3.985 9 H 0.125 0.875 10 N -0.865 5.865 11 S 2.690 3.310 12 O -0.952 6.952 13 O -0.953 6.953 14 C -0.716 4.716 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.255 0.745 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.046 0.954 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.139 1.622 -15.966 17.182 hybrid contribution -1.786 0.403 0.830 2.010 sum -7.925 2.025 -15.136 17.205 Atomic orbital electron populations 1.22883 0.80416 1.03287 1.00203 1.87849 1.20059 1.26001 1.94764 1.23842 0.95278 0.86144 0.96101 0.89340 1.23970 0.87701 0.97298 0.96353 1.89179 1.27963 1.48286 1.63108 1.24050 0.94484 0.97396 0.88788 1.22164 0.93135 0.85163 0.98075 0.87520 1.55671 1.75788 1.12041 1.43020 1.05687 0.76001 0.74970 0.74360 1.93560 1.86057 1.30145 1.85451 1.93549 1.46700 1.70254 1.84762 1.30534 1.14694 1.11110 1.15215 1.17924 0.93110 0.94055 0.86901 1.22272 1.00140 0.95885 1.03831 1.22276 0.97714 0.98737 1.03406 1.20892 1.02073 1.40507 0.90765 0.92434 1.24935 0.95200 0.95060 0.98492 1.69792 1.18791 1.45138 1.18387 0.86598 0.80684 0.79450 0.80883 1.20308 1.21158 1.20304 0.93978 0.89188 0.93455 0.88695 0.91010 0.87225 0.90926 0.74503 0.86742 0.86213 0.95366 0.88646 0.94479 0.94502 0.88662 0.95270 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.31 16 2 O -0.37 -3.77 8.77 -35.23 -0.31 -4.08 16 3 C 0.05 0.46 3.63 -25.00 -0.09 0.37 16 4 H 0.09 0.72 7.82 -51.93 -0.41 0.32 16 5 C 0.02 0.22 7.39 38.10 0.28 0.51 16 6 O -0.37 -4.34 11.65 -35.23 -0.41 -4.75 16 7 C 0.03 0.38 7.35 37.93 0.28 0.65 16 8 C 0.12 1.50 3.54 -66.37 -0.24 1.26 16 9 H 0.11 1.21 7.26 -51.93 -0.38 0.83 16 10 N -1.11 -15.31 5.08 -3.56 -0.02 -15.33 16 11 S 2.59 47.24 4.43 -107.50 -0.48 46.77 16 12 O -0.96 -20.20 15.70 -57.54 -0.90 -21.10 16 13 O -0.96 -19.47 15.44 -57.54 -0.89 -20.36 16 14 C -0.58 -11.13 4.92 37.16 0.18 -10.95 16 15 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 16 C -0.16 -4.02 7.77 37.15 0.29 -3.73 16 17 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 18 C -0.50 -13.06 8.01 -34.44 -0.28 -13.33 16 19 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -23.95 9.35 55.43 0.52 -23.43 16 22 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 0.86 8.06 -51.92 -0.42 0.44 16 33 H 0.42 5.38 7.68 -34.47 -0.26 5.12 16 34 H 0.11 1.94 7.49 -51.92 -0.39 1.55 16 35 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 36 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 37 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 38 H 0.04 0.87 8.14 -51.92 -0.42 0.44 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 41 H 0.03 0.67 5.47 -51.93 -0.28 0.39 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -31.76 338.80 -7.15 -38.92 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.39 Total: 6.92 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 1.64 Total: -24.08 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.50 Total: -38.76 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -2.51 Total: -50.30 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 47.24 SS G_CDS: -0.48 Total: 46.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.76 -7.15 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416573914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.848 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds