Wall clock time and date at job start Fri Apr 10 2020 14:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46496 * 120.00270 * 2 1 4 4 H 1.08999 * 110.46134 * 177.39872 * 3 2 1 5 5 C 1.54477 * 110.51206 * 54.63838 * 3 2 1 6 6 O 1.44421 * 104.80417 * 217.37895 * 5 3 2 7 7 C 1.44423 * 105.27716 * 40.51534 * 6 5 3 8 8 C 1.54479 * 104.79975 * 319.48508 * 7 6 5 9 9 H 1.09000 * 110.50941 * 142.62500 * 8 7 6 10 10 O 1.42901 * 110.51438 * 265.33595 * 8 7 6 11 11 S 1.65605 * 119.99885 * 179.97438 * 2 1 3 12 12 O 1.42098 * 104.27776 * 153.92886 * 11 2 1 13 13 O 1.42101 * 104.27890 * 26.06731 * 11 2 1 14 14 C 1.81403 * 104.44959 * 269.99797 * 11 2 1 15 15 C 1.53001 * 109.47298 * 179.97438 * 14 11 2 16 16 C 1.52998 * 109.46910 * 59.99957 * 15 14 11 17 17 C 1.53003 * 109.47075 * 300.00454 * 15 14 11 18 18 C 1.50692 * 109.47038 * 179.97438 * 15 14 11 19 19 H 1.07996 * 120.00361 * 357.32135 * 18 15 14 20 20 C 1.37876 * 119.99836 * 177.32123 * 18 15 14 21 21 N 1.31518 * 120.00051 * 6.50099 * 20 18 15 22 22 Si 1.86806 * 120.00121 * 186.50128 * 20 18 15 23 23 H 1.48495 * 109.47013 * 84.98802 * 22 20 18 24 24 H 1.48495 * 109.46861 * 324.98990 * 22 20 18 25 25 H 1.48499 * 109.47252 * 204.98988 * 22 20 18 26 26 H 1.09001 * 109.46979 * 270.00108 * 1 2 3 27 27 H 1.09000 * 109.47079 * 29.99993 * 1 2 3 28 28 H 1.09003 * 109.47468 * 150.00251 * 1 2 3 29 29 H 1.09000 * 110.37127 * 336.21421 * 5 3 2 30 30 H 1.09003 * 110.36692 * 98.54825 * 5 3 2 31 31 H 1.08998 * 110.36911 * 200.65710 * 7 6 5 32 32 H 1.09000 * 110.37141 * 78.31827 * 7 6 5 33 33 H 0.96706 * 113.99306 * 294.64522 * 10 8 7 34 34 H 1.08997 * 109.46860 * 59.99681 * 14 11 2 35 35 H 1.09004 * 109.47078 * 300.00096 * 14 11 2 36 36 H 1.09000 * 109.47346 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.47765 * 300.00153 * 16 15 14 38 38 H 1.09004 * 109.47095 * 60.00081 * 16 15 14 39 39 H 1.09004 * 109.46489 * 306.77987 * 17 15 14 40 40 H 1.08992 * 109.47480 * 66.77936 * 17 15 14 41 41 H 1.08993 * 109.46657 * 186.78473 * 17 15 14 42 42 H 0.97001 * 119.99624 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2715 1.0885 0.0463 5 6 1.7430 2.1561 1.1799 6 8 1.7503 3.5012 0.6541 7 6 1.2141 3.3903 -0.6823 8 6 1.8416 2.0993 -1.2533 9 1 1.1206 1.5660 -1.8729 10 8 3.0193 2.4041 -2.0030 11 16 2.2929 -1.4342 0.0006 12 8 3.5394 -1.1195 -0.6047 13 8 1.3969 -2.3565 -0.6041 14 6 2.5193 -1.8254 1.7575 15 6 3.2808 -3.1456 1.8920 16 6 4.6482 -3.0166 1.2180 17 6 2.4840 -4.2649 1.2188 18 6 3.4694 -3.4702 3.3514 19 1 3.1230 -2.7808 4.1071 20 6 4.0842 -4.6474 3.7220 21 7 4.6197 -5.4258 2.8072 22 14 4.1565 -5.1366 5.5234 23 1 2.9028 -5.8399 5.8960 24 1 4.3092 -3.9199 6.3609 25 1 5.3149 -6.0389 5.7452 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 0.7382 1.8786 1.4984 30 1 2.4429 2.0698 2.0111 31 1 1.5078 4.2521 -1.2816 32 1 0.1282 3.3021 -0.6494 33 1 2.8538 2.9246 -2.8011 34 1 1.5451 -1.9177 2.2375 35 1 3.0866 -1.0278 2.2371 36 1 5.1906 -3.9572 1.3134 37 1 4.5123 -2.7815 0.1623 38 1 5.2159 -2.2192 1.6975 39 1 1.4690 -4.2778 1.6160 40 1 2.4510 -4.0912 0.1433 41 1 2.9642 -5.2229 1.4176 42 1 5.0519 -6.2542 3.0679 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451532443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:14 Heat of formation + Delta-G solvation = -153.438168 kcal Electronic energy + Delta-G solvation = -25492.500864 eV Core-core repulsion = 21793.619989 eV Total energy + Delta-G solvation = -3698.880874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13439 -36.66180 -36.31652 -36.22692 -35.84709 -35.26762 -31.69228 -29.95119 -28.86237 -26.82979 -26.12676 -25.74373 -25.24288 -23.08456 -21.12085 -19.48982 -18.79190 -17.83840 -17.14074 -16.93009 -16.30290 -15.97002 -15.49563 -15.33715 -15.20338 -14.75534 -14.26205 -13.77105 -13.45662 -13.15790 -13.09646 -13.00563 -12.54027 -12.53663 -12.51552 -12.33123 -11.94526 -11.52506 -11.37957 -11.19023 -11.05312 -11.03165 -10.96195 -10.72593 -10.46841 -10.39727 -10.33057 -10.12960 -9.94955 -9.68641 -9.59062 -9.04783 -8.69912 -8.39579 -6.05821 -4.17472 0.73016 2.89087 3.25220 3.32379 3.33838 3.67711 3.90128 4.24494 4.31115 4.36683 4.52766 4.57316 4.67828 4.83716 4.94880 5.14366 5.19342 5.25486 5.33365 5.42725 5.47217 5.56374 5.64536 5.67830 5.72723 5.96439 6.33208 6.34165 6.60023 6.65948 6.76078 6.88400 7.01782 7.28838 7.42367 7.46152 7.65822 7.95602 8.07398 8.31214 8.80803 9.47810 10.95370 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.004339 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.676784 B = 6451.952836 C = 6796.815098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.003 6.003 3 C 0.122 3.878 4 H 0.129 0.871 5 C 0.035 3.965 6 O -0.365 6.365 7 C 0.015 3.985 8 C 0.060 3.940 9 H 0.079 0.921 10 O -0.547 6.547 11 S 2.588 3.412 12 O -0.953 6.953 13 O -0.959 6.959 14 C -0.580 4.580 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.161 4.161 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.882 5.882 22 Si 0.896 3.104 23 H -0.279 1.279 24 H -0.275 1.275 25 H -0.286 1.286 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.378 0.622 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.025 0.975 41 H 0.095 0.905 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 14.804 -6.322 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.838 5.838 3 C 0.015 3.985 4 H 0.147 0.853 5 C -0.044 4.044 6 O -0.283 6.283 7 C -0.062 4.062 8 C -0.001 4.001 9 H 0.097 0.903 10 O -0.352 6.352 11 S 2.688 3.312 12 O -0.943 6.943 13 O -0.950 6.950 14 C -0.714 4.714 15 C 0.079 3.921 16 C -0.222 4.222 17 C -0.218 4.218 18 C -0.542 4.542 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.723 3.277 23 H -0.205 1.205 24 H -0.200 1.200 25 H -0.212 1.212 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.225 0.775 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.114 0.886 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.290 14.046 -6.569 17.583 hybrid contribution -0.537 0.083 1.116 1.241 sum -8.826 14.130 -5.453 17.530 Atomic orbital electron populations 1.21595 0.79045 1.04044 1.02173 1.57842 1.14928 1.20804 1.90261 1.22082 0.99278 0.84148 0.93024 0.85320 1.23882 1.02461 0.81484 0.96562 1.89175 1.84703 1.26440 1.27952 1.24177 0.98039 0.98775 0.85218 1.23509 0.87989 0.94828 0.93775 0.90291 1.86647 1.31450 1.76285 1.40829 1.05955 0.73677 0.72079 0.79501 1.93569 1.43107 1.82488 1.75182 1.93532 1.65109 1.60959 1.75365 1.30571 1.09942 1.10318 1.20539 1.17945 0.90833 0.85345 0.97940 1.22310 0.99516 1.03987 0.96360 1.22211 0.98976 1.04219 0.96436 1.20917 1.38853 1.04594 0.89837 0.92275 1.24938 0.94755 0.96429 0.97571 1.69814 1.36502 1.13066 1.32607 0.86557 0.77636 0.78513 0.84974 1.20542 1.19996 1.21171 0.92406 0.91393 0.89209 0.90873 0.87639 0.88447 0.91450 0.77465 0.86324 0.86394 0.88450 0.95492 0.94427 0.94603 0.95578 0.88636 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 9.20 59.84 0.55 1.35 16 2 N -1.00 -13.75 3.05 -112.94 -0.34 -14.09 16 3 C 0.12 1.60 3.24 -66.36 -0.22 1.39 16 4 H 0.13 1.96 6.86 -51.93 -0.36 1.60 16 5 C 0.03 0.38 7.23 37.93 0.27 0.66 16 6 O -0.36 -4.33 11.65 -35.23 -0.41 -4.74 16 7 C 0.02 0.14 7.38 37.93 0.28 0.42 16 8 C 0.06 0.66 3.67 -25.16 -0.09 0.57 16 9 H 0.08 0.78 7.12 -51.93 -0.37 0.41 16 10 O -0.55 -6.50 13.30 -35.23 -0.47 -6.97 16 11 S 2.59 47.80 4.45 -107.50 -0.48 47.32 16 12 O -0.95 -20.28 14.25 -57.54 -0.82 -21.10 16 13 O -0.96 -19.62 14.34 -57.54 -0.82 -20.45 16 14 C -0.58 -11.13 5.11 37.16 0.19 -10.94 16 15 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 16 C -0.16 -4.05 7.80 37.16 0.29 -3.76 16 17 C -0.16 -3.92 7.57 37.16 0.28 -3.63 16 18 C -0.50 -13.07 8.01 -34.44 -0.28 -13.34 16 19 H 0.06 1.49 7.75 -52.49 -0.41 1.09 16 20 C 0.07 1.72 5.09 -17.82 -0.09 1.63 16 21 N -0.88 -23.95 9.38 55.43 0.52 -23.43 16 22 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.06 0.50 7.89 -51.93 -0.41 0.09 16 27 H 0.07 0.53 6.96 -51.93 -0.36 0.17 16 28 H 0.09 1.02 6.91 -51.93 -0.36 0.66 16 29 H 0.07 0.68 6.79 -51.93 -0.35 0.33 16 30 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.10 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.38 2.45 9.12 45.56 0.42 2.86 16 34 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 36 H 0.10 2.59 6.05 -51.93 -0.31 2.28 16 37 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.60 5.97 -51.93 -0.31 0.29 16 41 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -33.52 334.19 -7.21 -40.73 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.51 Total: 6.02 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 1.11 Total: -23.78 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.18 Total: -37.52 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -2.52 Total: -53.26 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 47.80 SS G_CDS: -0.48 Total: 47.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.52 -7.21 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451532443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.706 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds