Wall clock time and date at job start Fri Apr 10 2020 14:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47447 * 2 1 4 4 C 1.50708 * 109.46827 * 239.99573 * 2 1 3 5 5 H 1.07998 * 119.99729 * 239.99936 * 4 2 1 6 6 C 1.37871 * 119.99783 * 60.00703 * 4 2 1 7 7 N 1.31519 * 120.00025 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00062 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47393 * 89.99762 * 8 6 4 10 10 H 1.48500 * 109.47280 * 210.00023 * 8 6 4 11 11 H 1.48504 * 109.46942 * 329.99665 * 8 6 4 12 12 C 1.52999 * 109.46723 * 120.00142 * 2 1 3 13 13 S 1.81398 * 109.47266 * 299.99378 * 12 2 1 14 14 O 1.42108 * 110.53802 * 68.38079 * 13 12 2 15 15 O 1.42097 * 110.54517 * 291.63227 * 13 12 2 16 16 N 1.65599 * 104.45024 * 180.02562 * 13 12 2 17 17 C 1.47420 * 125.65258 * 270.04251 * 16 13 12 18 18 C 1.54907 * 104.83524 * 204.09254 * 17 16 13 19 19 H 1.09000 * 111.00618 * 204.91301 * 18 17 16 20 20 O 1.42906 * 111.00204 * 81.10397 * 18 17 16 21 21 C 1.55155 * 101.58383 * 322.99460 * 18 17 16 22 22 H 1.08998 * 110.71769 * 277.13840 * 21 18 17 23 23 C 1.52994 * 110.72348 * 153.86012 * 21 18 17 24 24 O 1.42900 * 109.47256 * 180.02562 * 23 21 18 25 25 C 1.47026 * 125.64313 * 90.00447 * 16 13 12 26 26 H 1.08996 * 109.47098 * 300.00079 * 1 2 3 27 27 H 1.09005 * 109.47117 * 59.99854 * 1 2 3 28 28 H 1.09003 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46921 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46810 * 299.99692 * 3 2 1 31 31 H 1.08996 * 109.47036 * 59.99883 * 3 2 1 32 32 H 0.97006 * 119.99905 * 180.02562 * 7 6 4 33 33 H 1.09007 * 109.46998 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.47754 * 60.00225 * 12 2 1 35 35 H 1.08997 * 110.36858 * 322.93484 * 17 16 13 36 36 H 1.08997 * 110.36396 * 85.14471 * 17 16 13 37 37 H 0.96700 * 113.99958 * 61.45405 * 20 18 17 38 38 H 1.08997 * 109.47343 * 300.02364 * 23 21 18 39 39 H 1.09004 * 109.47006 * 60.02591 * 23 21 18 40 40 H 0.96697 * 114.00028 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.88351 * 298.38966 * 25 16 13 42 42 H 1.08998 * 109.88379 * 59.55756 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 6 2.0399 -0.7213 1.2492 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4100 2.8543 16 7 2.0540 -0.7401 3.9936 17 6 1.3975 -1.8859 4.6488 18 6 2.0165 -1.9394 6.0678 19 1 1.9587 -2.9462 6.4816 20 8 1.3881 -0.9947 6.9367 21 6 3.4879 -1.5394 5.7812 22 1 4.0638 -2.4022 5.4465 23 6 4.1277 -0.9064 7.0184 24 8 5.4797 -0.5483 6.7251 25 6 3.3495 -0.5021 4.6469 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4423 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 0.7082 1.1609 -3.4844 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2493 35 1 0.3216 -1.7225 4.7101 36 1 1.6103 -2.8065 4.1054 37 1 0.4423 -1.1487 7.0670 38 1 3.5686 -0.0143 7.3004 39 1 4.1115 -1.6208 7.8416 40 1 5.9482 -0.1407 7.4663 41 1 4.1572 -0.6306 3.9264 42 1 3.3762 0.5058 5.0610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573220977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:50 Heat of formation + Delta-G solvation = -165.866079 kcal Electronic energy + Delta-G solvation = -25106.673101 eV Core-core repulsion = 21407.253313 eV Total energy + Delta-G solvation = -3699.419789 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.52517 -36.73997 -36.51925 -36.26541 -35.43251 -35.22889 -31.65974 -31.35113 -28.75286 -26.65993 -25.71180 -25.35610 -25.20682 -22.44198 -20.46326 -19.45023 -18.67463 -17.81621 -17.44247 -17.25978 -15.99448 -15.83363 -15.37481 -15.11657 -14.81674 -14.75367 -14.41450 -14.14058 -13.30539 -13.28901 -12.99332 -12.81545 -12.50085 -12.49180 -12.16464 -11.99161 -11.57623 -11.38416 -11.24151 -11.14173 -11.06098 -10.99302 -10.91168 -10.69960 -10.37786 -10.31899 -10.26222 -10.10006 -10.08992 -9.64834 -9.56537 -8.88553 -8.57954 -8.39857 -6.02999 -4.15053 0.81642 3.12527 3.25990 3.33234 3.35534 3.77338 3.91408 4.26665 4.34398 4.36108 4.44530 4.82204 4.97291 5.01203 5.07776 5.22105 5.24090 5.39358 5.42872 5.53239 5.65929 5.68318 5.73690 5.83823 6.03044 6.19399 6.38855 6.50140 6.71064 6.80182 6.91281 7.04776 7.31888 7.38259 7.43650 7.50810 7.68084 7.98305 8.09900 8.33292 8.83329 9.50284 10.98328 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.024660 B = 0.003994 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.154028 B = 7008.688569 C = 7336.904632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.501 4.501 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.582 4.582 13 S 2.609 3.391 14 O -0.961 6.961 15 O -0.957 6.957 16 N -1.018 6.018 17 C 0.085 3.915 18 C 0.101 3.899 19 H 0.080 0.920 20 O -0.555 6.555 21 C -0.089 4.089 22 H 0.102 0.898 23 C 0.091 3.909 24 O -0.575 6.575 25 C 0.134 3.866 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.383 0.617 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.380 0.620 41 H 0.068 0.932 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 -6.745 18.687 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.715 4.715 13 S 2.709 3.291 14 O -0.952 6.952 15 O -0.948 6.948 16 N -0.854 5.854 17 C -0.042 4.042 18 C 0.040 3.960 19 H 0.098 0.902 20 O -0.362 6.362 21 C -0.109 4.109 22 H 0.120 0.880 23 C 0.013 3.987 24 O -0.381 6.381 25 C 0.008 3.992 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.227 0.773 41 H 0.086 0.914 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.382 -5.795 18.038 19.245 hybrid contribution 0.282 -1.130 -0.711 1.365 sum 3.664 -6.925 17.326 19.015 Atomic orbital electron populations 1.22268 0.96901 1.00570 1.02311 1.17946 0.92838 0.92264 0.89079 1.22271 0.99770 0.97773 1.02308 1.20938 1.31707 1.12056 0.89378 0.92331 1.24941 0.94910 0.94972 0.98929 1.69807 1.36338 1.22571 1.23470 0.86526 0.79178 0.79362 0.82512 1.20656 1.21106 1.19955 1.30582 1.11331 1.12760 1.16866 1.05319 0.74371 0.74667 0.74771 1.93521 1.29323 1.86603 1.85743 1.93536 1.78161 1.37517 1.85579 1.58901 1.29763 1.46798 1.49958 1.22718 0.98623 0.89554 0.93259 1.22907 0.92022 0.92109 0.88956 0.90188 1.86471 1.27223 1.55101 1.67361 1.22330 0.93773 0.99489 0.95339 0.87980 1.21954 0.82267 0.99031 0.95405 1.86475 1.25475 1.83501 1.42612 1.21609 0.84279 0.99231 0.94051 0.95417 0.88622 0.94520 0.94435 0.88627 0.95391 0.92742 0.86425 0.86527 0.89331 0.90691 0.76914 0.92105 0.93479 0.77342 0.91369 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 7.77 37.16 0.29 -3.78 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.13 7.78 37.16 0.29 -3.84 16 4 C -0.50 -13.34 8.01 -34.44 -0.28 -13.62 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 C -0.58 -11.75 5.12 37.16 0.19 -11.56 16 13 S 2.61 50.86 4.68 -107.50 -0.50 50.36 16 14 O -0.96 -20.53 14.90 -57.54 -0.86 -21.39 16 15 O -0.96 -21.27 15.22 -57.54 -0.88 -22.15 16 16 N -1.02 -15.32 3.62 -111.42 -0.40 -15.72 16 17 C 0.08 0.96 6.80 -2.53 -0.02 0.94 16 18 C 0.10 0.91 4.17 -24.58 -0.10 0.81 16 19 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 20 O -0.56 -5.33 12.22 -35.23 -0.43 -5.76 16 21 C -0.09 -0.93 3.17 -88.79 -0.28 -1.21 16 22 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 23 C 0.09 0.86 5.95 37.15 0.22 1.08 16 24 O -0.58 -5.61 13.50 -35.23 -0.48 -6.09 16 25 C 0.13 1.84 6.34 -3.06 -0.02 1.82 16 26 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 27 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 2.58 6.07 -51.93 -0.32 2.27 16 31 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.12 2.20 8.14 -51.92 -0.42 1.77 16 34 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 35 H 0.09 1.01 7.67 -51.93 -0.40 0.61 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.38 2.25 9.11 45.56 0.42 2.66 16 38 H 0.06 0.63 7.44 -51.93 -0.39 0.25 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 1.97 9.12 45.56 0.42 2.38 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.12 7.77 -51.93 -0.40 0.72 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -34.67 338.64 -7.73 -42.39 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.90 Total: 7.09 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 0.12 Total: -25.78 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.12 Total: -39.55 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -2.64 Total: -55.38 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 50.86 SS G_CDS: -0.50 Total: 50.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.67 -7.73 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573220977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.475 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds