Wall clock time and date at job start Fri Apr 10 2020 14:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47447 * 2 1 4 4 C 1.50708 * 109.46827 * 239.99573 * 2 1 3 5 5 H 1.07998 * 119.99729 * 239.99936 * 4 2 1 6 6 C 1.37871 * 119.99783 * 60.00703 * 4 2 1 7 7 N 1.31519 * 120.00025 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00062 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47393 * 89.99762 * 8 6 4 10 10 H 1.48500 * 109.47280 * 210.00023 * 8 6 4 11 11 H 1.48504 * 109.46942 * 329.99665 * 8 6 4 12 12 C 1.52999 * 109.46723 * 120.00142 * 2 1 3 13 13 S 1.81398 * 109.47266 * 299.99378 * 12 2 1 14 14 O 1.42108 * 110.53802 * 68.38079 * 13 12 2 15 15 O 1.42097 * 110.54517 * 291.63227 * 13 12 2 16 16 N 1.65599 * 104.45024 * 180.02562 * 13 12 2 17 17 C 1.47420 * 125.65258 * 270.04251 * 16 13 12 18 18 C 1.54907 * 104.83524 * 204.09254 * 17 16 13 19 19 H 1.09000 * 111.00618 * 204.91301 * 18 17 16 20 20 O 1.42906 * 111.00204 * 81.10397 * 18 17 16 21 21 C 1.55155 * 101.58383 * 322.99460 * 18 17 16 22 22 H 1.08998 * 110.71769 * 277.13840 * 21 18 17 23 23 C 1.52994 * 110.72348 * 153.86012 * 21 18 17 24 24 O 1.42900 * 109.47256 * 180.02562 * 23 21 18 25 25 C 1.47026 * 125.64313 * 90.00447 * 16 13 12 26 26 H 1.08996 * 109.47098 * 300.00079 * 1 2 3 27 27 H 1.09005 * 109.47117 * 59.99854 * 1 2 3 28 28 H 1.09003 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46921 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46810 * 299.99692 * 3 2 1 31 31 H 1.08996 * 109.47036 * 59.99883 * 3 2 1 32 32 H 0.97006 * 119.99905 * 180.02562 * 7 6 4 33 33 H 1.09007 * 109.46998 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.47754 * 60.00225 * 12 2 1 35 35 H 1.08997 * 110.36858 * 322.93484 * 17 16 13 36 36 H 1.08997 * 110.36396 * 85.14471 * 17 16 13 37 37 H 0.96700 * 113.99958 * 61.45405 * 20 18 17 38 38 H 1.08997 * 109.47343 * 300.02364 * 23 21 18 39 39 H 1.09004 * 109.47006 * 60.02591 * 23 21 18 40 40 H 0.96697 * 114.00028 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.88351 * 298.38966 * 25 16 13 42 42 H 1.08998 * 109.88379 * 59.55756 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 6 2.0399 -0.7213 1.2492 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4100 2.8543 16 7 2.0540 -0.7401 3.9936 17 6 1.3975 -1.8859 4.6488 18 6 2.0165 -1.9394 6.0678 19 1 1.9587 -2.9462 6.4816 20 8 1.3881 -0.9947 6.9367 21 6 3.4879 -1.5394 5.7812 22 1 4.0638 -2.4022 5.4465 23 6 4.1277 -0.9064 7.0184 24 8 5.4797 -0.5483 6.7251 25 6 3.3495 -0.5021 4.6469 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4423 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 0.7082 1.1609 -3.4844 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2493 35 1 0.3216 -1.7225 4.7101 36 1 1.6103 -2.8065 4.1054 37 1 0.4423 -1.1487 7.0670 38 1 3.5686 -0.0143 7.3004 39 1 4.1115 -1.6208 7.8416 40 1 5.9482 -0.1407 7.4663 41 1 4.1572 -0.6306 3.9264 42 1 3.3762 0.5058 5.0610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573220977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:50 Heat of formation + Delta-G solvation = -195.879191 kcal Electronic energy + Delta-G solvation = -25107.974568 eV Core-core repulsion = 21407.253313 eV Total energy + Delta-G solvation = -3700.721255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35724 -38.18262 -38.16334 -37.41564 -36.94038 -36.23106 -33.65394 -32.23974 -29.64398 -28.37517 -27.73230 -27.27469 -26.24098 -23.33782 -21.39408 -21.19100 -19.99525 -18.98382 -18.45952 -18.11097 -17.89564 -17.11815 -16.84311 -16.71580 -16.19481 -15.64808 -15.41253 -15.12446 -14.89482 -14.72432 -14.46353 -14.18788 -13.92373 -13.89470 -13.50157 -13.22201 -13.11982 -12.98133 -12.90382 -12.79597 -12.56718 -12.45016 -12.21037 -12.14366 -12.03198 -11.97326 -11.76117 -11.60528 -11.41094 -11.02714 -10.79411 -10.67612 -10.43535 -9.87717 -8.04714 -6.23850 -0.71177 1.43458 1.45046 1.54073 1.77072 2.43175 2.86418 2.98461 3.17524 3.22527 3.31092 3.48138 3.79340 3.97353 4.13811 4.19267 4.28308 4.38756 4.52122 4.55415 4.57607 4.63973 4.76939 4.81268 4.82465 4.83062 4.93818 4.97551 5.03317 5.09147 5.23292 5.34487 5.40758 5.49799 5.62129 5.93289 6.07979 6.31239 6.80488 6.89310 6.95650 7.44552 8.95345 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.024660 B = 0.003994 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.154028 B = 7008.688569 C = 7336.904632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.068 3.932 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.268 1.268 12 C -0.584 4.584 13 S 2.626 3.374 14 O -0.984 6.984 15 O -0.992 6.992 16 N -1.015 6.015 17 C 0.068 3.932 18 C 0.111 3.889 19 H 0.124 0.876 20 O -0.574 6.574 21 C -0.089 4.089 22 H 0.121 0.879 23 C 0.094 3.906 24 O -0.594 6.594 25 C 0.124 3.876 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.398 0.602 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.397 0.603 41 H 0.068 0.932 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -9.192 20.065 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.065 3.935 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.717 4.717 13 S 2.726 3.274 14 O -0.974 6.974 15 O -0.982 6.982 16 N -0.854 5.854 17 C -0.056 4.056 18 C 0.050 3.950 19 H 0.141 0.859 20 O -0.383 6.383 21 C -0.109 4.109 22 H 0.139 0.861 23 C 0.016 3.984 24 O -0.403 6.403 25 C -0.001 4.001 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.248 0.752 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.247 0.753 41 H 0.086 0.914 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.203 -8.242 19.424 21.515 hybrid contribution 0.035 -0.353 -1.054 1.112 sum 4.238 -8.595 18.370 20.720 Atomic orbital electron populations 1.22185 0.97508 1.00568 1.01284 1.17952 0.92536 0.92062 0.90902 1.22203 0.99729 0.98527 1.01260 1.21269 1.31773 1.12312 0.90333 0.91907 1.25699 0.95140 0.95636 1.01735 1.69949 1.37159 1.23674 1.23916 0.85574 0.78867 0.78246 0.79037 1.20169 1.21218 1.19220 1.30505 1.12231 1.13455 1.15474 1.04417 0.73661 0.74229 0.75103 1.93480 1.30804 1.86931 1.86212 1.93485 1.78621 1.39953 1.86180 1.58486 1.30666 1.47668 1.48582 1.23199 0.98545 0.88932 0.94968 1.23002 0.90553 0.93862 0.87543 0.85878 1.86442 1.28688 1.55895 1.67245 1.22440 0.95241 0.98940 0.94237 0.86070 1.21925 0.81873 0.98942 0.95627 1.86427 1.25762 1.83842 1.44277 1.21794 0.83452 0.99545 0.95302 0.95077 0.90970 0.93914 0.94296 0.90895 0.95156 0.92867 0.85075 0.84409 0.89591 0.88107 0.75157 0.93696 0.90994 0.75279 0.91352 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 2 C 0.07 3.35 0.52 -52.93 -0.03 3.32 16 3 C -0.16 -8.21 7.78 71.98 0.56 -7.65 16 4 C -0.52 -27.35 8.01 25.60 0.21 -27.15 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 0.93 5.15 84.65 0.44 1.36 16 7 N -0.91 -50.85 9.35 21.45 0.20 -50.65 16 8 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 C -0.58 -23.02 5.12 71.98 0.37 -22.65 16 13 S 2.63 101.52 4.68 -56.49 -0.26 101.26 16 14 O -0.98 -41.77 14.90 -127.65 -1.90 -43.67 16 15 O -0.99 -44.74 15.22 -127.65 -1.94 -46.68 16 16 N -1.02 -29.12 3.62 -506.43 -1.83 -30.95 16 17 C 0.07 1.36 6.80 86.86 0.59 1.95 16 18 C 0.11 1.61 4.17 31.98 0.13 1.75 16 19 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 20 O -0.57 -9.55 12.22 -148.98 -1.82 -11.37 16 21 C -0.09 -1.58 3.17 -9.61 -0.03 -1.61 16 22 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 23 C 0.09 1.55 5.95 71.98 0.43 1.98 16 24 O -0.59 -10.49 13.50 -148.98 -2.01 -12.50 16 25 C 0.12 3.27 6.34 86.73 0.55 3.82 16 26 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 27 H 0.07 3.96 6.07 -2.38 -0.01 3.95 16 28 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.07 4.06 6.07 -2.38 -0.01 4.05 16 31 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 32 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 33 H 0.13 4.74 8.14 -2.39 -0.02 4.72 16 34 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 35 H 0.09 1.76 7.67 -2.39 -0.02 1.74 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.40 3.70 9.11 -74.06 -0.67 3.03 16 38 H 0.04 0.88 7.44 -2.39 -0.02 0.86 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.40 3.43 9.12 -74.06 -0.68 2.76 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 1.57 7.77 -2.39 -0.02 1.55 16 Total: -1.00 -75.04 338.64 -4.08 -79.12 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -0.31 Total: 23.29 kcal Atomic # 6 Polarization: -56.05 SS G_CDS: 3.77 Total: -52.27 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.63 Total: -81.60 kcal Atomic # 8 Polarization: -106.54 SS G_CDS: -7.68 Total: -114.22 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 101.52 SS G_CDS: -0.26 Total: 101.26 kcal Total: -75.04 -4.08 -79.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573220977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.755 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds