Wall clock time and date at job start Fri Apr 10 2020 14:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 13 13 S 1.81396 * 109.47254 * 59.99625 * 12 2 1 14 14 O 1.42099 * 110.54432 * 291.62956 * 13 12 2 15 15 O 1.42103 * 110.54154 * 68.37557 * 13 12 2 16 16 N 1.65602 * 104.44975 * 180.02562 * 13 12 2 17 17 C 1.47029 * 125.64626 * 269.69134 * 16 13 12 18 18 C 1.54333 * 107.26208 * 178.84727 * 17 16 13 19 19 H 1.08997 * 110.66336 * 96.52531 * 18 17 16 20 20 O 1.42905 * 110.84911 * 219.67247 * 18 17 16 21 21 C 1.55158 * 103.02456 * 338.14361 * 18 17 16 22 22 H 1.09003 * 111.03577 * 277.21771 * 21 18 17 23 23 C 1.52998 * 111.00490 * 153.37893 * 21 18 17 24 24 O 1.42894 * 109.46870 * 181.35246 * 23 21 18 25 25 C 1.47421 * 125.64903 * 90.00155 * 16 13 12 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 12 2 1 35 35 H 1.08991 * 109.88186 * 298.39857 * 17 16 13 36 36 H 1.09000 * 109.88001 * 59.56055 * 17 16 13 37 37 H 0.96696 * 113.99981 * 293.69406 * 20 18 17 38 38 H 1.09004 * 109.47026 * 301.34862 * 23 21 18 39 39 H 1.08999 * 109.47210 * 61.34709 * 23 21 18 40 40 H 0.96708 * 114.00031 * 180.02562 * 24 23 21 41 41 H 1.08998 * 110.36398 * 322.93289 * 25 16 13 42 42 H 1.08996 * 110.36685 * 85.14125 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2877 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 6 2.0400 -0.7212 -1.2494 13 16 1.4353 0.1340 -2.7304 14 8 0.0279 -0.0182 -2.8544 15 8 2.0479 1.4102 -2.8544 16 7 2.0529 -0.7406 -3.9937 17 6 3.3454 -0.4997 -4.6518 18 6 3.5086 -1.5738 -5.7479 19 1 3.1980 -1.1844 -6.7174 20 8 4.8569 -2.0443 -5.8024 21 6 2.5523 -2.7015 -5.2775 22 1 3.0324 -3.3363 -4.5327 23 6 2.0571 -3.5311 -6.4638 24 8 1.1564 -4.5379 -5.9981 25 6 1.3950 -1.8857 -4.6489 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 0.7096 1.1617 3.4844 33 1 3.1300 -0.7208 -1.2496 34 1 1.6767 -1.7489 -1.2494 35 1 3.3538 0.4940 -5.0995 36 1 4.1534 -0.5881 -3.9255 37 1 5.4947 -1.3773 -6.0910 38 1 1.5417 -2.8817 -7.1715 39 1 2.9069 -4.0035 -6.9567 40 1 0.8023 -5.1033 -6.6982 41 1 0.8618 -2.4883 -3.9137 42 1 0.7100 -1.5381 -5.4221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573220978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:53 Heat of formation + Delta-G solvation = -167.016857 kcal Electronic energy + Delta-G solvation = -25022.885253 eV Core-core repulsion = 21323.415563 eV Total energy + Delta-G solvation = -3699.469690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.48611 -36.84450 -36.56205 -36.27665 -35.76125 -35.29122 -31.66111 -31.40318 -28.58099 -26.67072 -25.71423 -25.44180 -25.20885 -22.41934 -20.72963 -19.45175 -18.60495 -17.95311 -17.36204 -17.27817 -16.26526 -15.96713 -15.47587 -15.10744 -14.99975 -14.73481 -14.14582 -13.86756 -13.53070 -13.30796 -13.05420 -12.99930 -12.52845 -12.50404 -12.15732 -12.07724 -11.87441 -11.47339 -11.30729 -11.08569 -11.05257 -10.91607 -10.82525 -10.70618 -10.40367 -10.33480 -10.27796 -10.22887 -10.09879 -9.65008 -9.58678 -8.95164 -8.61164 -8.39803 -6.02755 -4.14511 0.77918 3.04629 3.26004 3.34345 3.37551 3.64366 3.97319 4.13303 4.33060 4.40964 4.58095 4.66586 4.81436 4.93773 5.03885 5.15693 5.22628 5.27743 5.42828 5.50551 5.63887 5.66789 5.68861 5.72509 6.01292 6.10452 6.39149 6.43083 6.71246 6.79828 6.90621 7.04185 7.30304 7.31911 7.36424 7.50717 7.68829 7.98274 8.10217 8.33623 8.84266 9.50919 10.98668 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.004162 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.363435 B = 6725.534566 C = 6994.998352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.500 4.500 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.580 4.580 13 S 2.606 3.394 14 O -0.957 6.957 15 O -0.960 6.960 16 N -1.020 6.020 17 C 0.091 3.909 18 C 0.102 3.898 19 H 0.076 0.924 20 O -0.556 6.556 21 C -0.094 4.094 22 H 0.103 0.897 23 C 0.088 3.912 24 O -0.569 6.569 25 C 0.133 3.867 26 H 0.095 0.905 27 H 0.037 0.963 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.382 0.618 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.380 0.620 41 H 0.086 0.914 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -6.246 -18.915 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.714 4.714 13 S 2.706 3.294 14 O -0.947 6.947 15 O -0.950 6.950 16 N -0.856 5.856 17 C -0.036 4.036 18 C 0.041 3.959 19 H 0.094 0.906 20 O -0.362 6.362 21 C -0.114 4.114 22 H 0.121 0.879 23 C 0.010 3.990 24 O -0.375 6.375 25 C 0.008 3.992 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.230 0.770 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.227 0.773 41 H 0.104 0.896 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.720 -5.563 -18.066 19.265 hybrid contribution 0.911 -0.701 0.424 1.225 sum 4.632 -6.263 -17.641 19.285 Atomic orbital electron populations 1.22274 0.96858 1.00681 1.02299 1.17956 0.92882 0.92224 0.89088 1.22271 0.99696 0.97799 1.02300 1.20981 1.31611 1.12054 0.89338 0.92240 1.24940 0.94887 0.94987 0.98937 1.69811 1.36415 1.22625 1.23363 0.86471 0.78642 0.79629 0.82865 1.19830 1.20946 1.20931 1.30558 1.11278 1.12901 1.16626 1.05442 0.74473 0.74617 0.74825 1.93544 1.29104 1.86474 1.85615 1.93531 1.78277 1.37537 1.85671 1.58933 1.29435 1.47340 1.49924 1.22358 0.86172 0.99131 0.95898 1.22776 0.82708 0.93147 0.97224 0.90648 1.86548 1.16774 1.41809 1.91024 1.22375 0.95089 0.95679 0.98289 0.87865 1.22065 0.92340 0.89732 0.94854 1.86513 1.64365 1.48053 1.38558 1.21893 0.94016 0.85786 0.97526 0.88606 0.94417 0.95425 0.88598 0.94489 0.95445 0.92804 0.86441 0.86349 0.90622 0.90546 0.76974 0.93312 0.92804 0.77255 0.89604 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 7.78 37.16 0.29 -3.81 16 2 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 3 C -0.16 -4.07 7.77 37.16 0.29 -3.78 16 4 C -0.50 -13.37 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.36 9.35 55.43 0.52 -23.84 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C -0.58 -11.78 5.12 37.16 0.19 -11.59 16 13 S 2.61 50.32 4.69 -107.50 -0.50 49.82 16 14 O -0.96 -20.68 15.22 -57.54 -0.88 -21.56 16 15 O -0.96 -20.47 15.22 -57.54 -0.88 -21.34 16 16 N -1.02 -15.17 3.62 -111.42 -0.40 -15.58 16 17 C 0.09 1.08 6.68 -3.06 -0.02 1.06 16 18 C 0.10 0.95 3.79 -24.89 -0.09 0.86 16 19 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 20 O -0.56 -4.86 13.39 -35.23 -0.47 -5.34 16 21 C -0.09 -1.01 3.05 -88.47 -0.27 -1.28 16 22 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 23 C 0.09 0.74 6.49 37.16 0.24 0.98 16 24 O -0.57 -5.26 13.51 -35.23 -0.48 -5.74 16 25 C 0.13 1.73 6.22 -2.53 -0.02 1.71 16 26 H 0.10 2.58 6.07 -51.93 -0.32 2.26 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 29 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 34 H 0.12 2.23 8.14 -51.92 -0.42 1.80 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.88 8.05 -51.93 -0.42 0.47 16 37 H 0.38 1.65 9.12 45.56 0.42 2.07 16 38 H 0.05 0.34 8.10 -51.93 -0.42 -0.09 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.38 1.67 9.12 45.56 0.42 2.09 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 0.84 8.01 -51.93 -0.42 0.43 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -34.51 341.13 -7.77 -42.29 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.96 Total: 6.22 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 0.16 Total: -25.94 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.12 Total: -39.42 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -2.70 Total: -53.97 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 50.32 SS G_CDS: -0.50 Total: 49.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.51 -7.77 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573220978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.732 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds