Wall clock time and date at job start Fri Apr 10 2020 14:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 C 1.50697 * 109.47630 * 239.99514 * 2 1 3 5 5 H 1.07997 * 120.00322 * 240.00162 * 4 2 1 6 6 C 1.37880 * 119.99943 * 59.99850 * 4 2 1 7 7 N 1.31518 * 119.99809 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47023 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47077 * 120.00165 * 8 6 4 11 11 H 1.48500 * 109.47130 * 240.00059 * 8 6 4 12 12 C 1.53009 * 109.47064 * 119.99452 * 2 1 3 13 13 S 1.81397 * 109.47235 * 300.00294 * 12 2 1 14 14 O 1.42105 * 110.54275 * 68.37271 * 13 12 2 15 15 O 1.42101 * 110.54298 * 291.62373 * 13 12 2 16 16 N 1.65599 * 104.44825 * 179.97438 * 13 12 2 17 17 C 1.50113 * 120.63418 * 90.00394 * 16 13 12 18 18 C 1.46920 * 106.77987 * 111.34262 * 17 16 13 19 19 O 1.42374 * 113.78911 * 56.80497 * 18 17 16 20 20 C 1.39644 * 108.63489 * 267.45667 * 19 18 17 21 21 C 1.55189 * 110.57023 * 101.17312 * 20 19 18 22 22 H 1.08997 * 109.57396 * 82.08258 * 21 20 19 23 23 O 1.42910 * 109.56866 * 202.32680 * 21 20 19 24 24 C 1.43422 * 120.63495 * 269.72207 * 16 13 12 25 25 H 1.08998 * 109.47786 * 300.00327 * 1 2 3 26 26 H 1.09005 * 109.47213 * 60.00504 * 1 2 3 27 27 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47448 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46897 * 299.99411 * 3 2 1 30 30 H 1.09001 * 109.47695 * 59.99437 * 3 2 1 31 31 H 0.97001 * 119.99986 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47149 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.46805 * 60.00171 * 12 2 1 34 34 H 1.09001 * 109.99027 * 230.66076 * 17 16 13 35 35 H 1.09003 * 109.98926 * 351.92893 * 17 16 13 36 36 H 1.09005 * 108.61509 * 177.92059 * 18 17 16 37 37 H 1.08999 * 108.61749 * 295.68763 * 18 17 16 38 38 H 1.09003 * 109.25031 * 221.44885 * 20 19 18 39 39 H 1.09000 * 109.25942 * 340.88868 * 20 19 18 40 40 H 0.96697 * 113.99508 * 300.00137 * 23 21 20 41 41 H 1.08994 * 108.12595 * 31.11528 * 24 16 13 42 42 H 1.08998 * 108.12641 * 147.60117 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5870 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0182 2.8544 15 8 2.0478 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.3930 -0.3992 4.5776 18 6 3.1459 0.1302 5.9256 19 8 2.4261 -0.7620 6.7700 20 6 1.0634 -0.4763 6.6627 21 6 0.3637 -1.4993 5.7288 22 1 0.1337 -2.4063 6.2878 23 8 -0.8447 -0.9325 5.2180 24 6 1.3150 -1.8350 4.5548 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 0.7095 1.1616 -3.4845 32 1 3.1300 -0.7208 1.2496 33 1 1.6766 -1.7488 1.2494 34 1 4.0127 -1.2939 4.6364 35 1 3.8855 0.3552 3.9639 36 1 4.1050 0.3540 6.3928 37 1 2.5805 1.0579 5.8370 38 1 0.6077 -0.5222 7.6518 39 1 0.9374 0.5269 6.2556 40 1 -1.4837 -0.6875 5.9012 41 1 0.7195 -2.2851 3.7606 42 1 2.0284 -2.5827 4.9014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582014528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:57 Heat of formation + Delta-G solvation = -172.319695 kcal Electronic energy + Delta-G solvation = -25901.172921 eV Core-core repulsion = 22201.473282 eV Total energy + Delta-G solvation = -3699.699639 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84861 -38.15738 -38.11467 -37.47061 -36.79440 -36.38168 -33.63623 -32.43459 -29.11053 -28.21075 -27.70576 -27.27486 -27.12660 -23.50970 -22.35491 -21.28954 -19.66374 -18.94421 -18.31407 -17.93049 -17.84254 -17.29923 -16.99463 -16.71547 -16.44537 -16.22029 -15.10852 -14.93588 -14.66881 -14.61938 -14.43624 -14.41730 -14.11720 -13.76549 -13.63907 -13.11947 -13.02824 -12.89020 -12.77585 -12.72702 -12.55267 -12.46258 -12.18311 -12.14684 -12.06356 -11.91440 -11.84480 -11.58273 -11.35836 -11.29467 -10.62848 -10.43222 -10.32110 -9.95942 -8.04068 -6.23044 -0.58942 1.42159 1.44803 1.54778 1.80522 2.43441 2.89975 2.96930 3.17665 3.24855 3.54892 3.62550 3.84226 3.99816 4.07704 4.11513 4.18319 4.27156 4.38989 4.46711 4.58828 4.63010 4.70704 4.82344 4.84560 4.85679 4.88019 4.92140 4.98416 5.07091 5.11145 5.37026 5.48733 5.63135 5.68705 5.95475 6.08038 6.10172 6.33168 6.81815 7.01310 7.45329 8.96032 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.004440 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.891532 B = 6304.123417 C = 6507.316380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.069 3.931 3 C -0.158 4.158 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.282 1.282 12 C -0.591 4.591 13 S 2.605 3.395 14 O -0.960 6.960 15 O -0.991 6.991 16 N -0.997 5.997 17 C 0.084 3.916 18 C 0.030 3.970 19 O -0.352 6.352 20 C 0.022 3.978 21 C 0.052 3.948 22 H 0.099 0.901 23 O -0.564 6.564 24 C 0.123 3.877 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.048 0.952 38 H 0.102 0.898 39 H 0.046 0.954 40 H 0.385 0.615 41 H 0.066 0.934 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 -5.439 19.024 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 C -0.216 4.216 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.208 1.208 12 C -0.722 4.722 13 S 2.703 3.297 14 O -0.950 6.950 15 O -0.981 6.981 16 N -0.834 5.834 17 C -0.039 4.039 18 C -0.047 4.047 19 O -0.269 6.269 20 C -0.056 4.056 21 C -0.009 4.009 22 H 0.117 0.883 23 O -0.370 6.370 24 C -0.004 4.004 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.064 0.936 40 H 0.234 0.766 41 H 0.084 0.916 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.615 -4.818 18.553 19.506 hybrid contribution -0.048 -0.341 -1.095 1.148 sum 3.566 -5.159 17.458 18.550 Atomic orbital electron populations 1.22172 0.97781 1.00251 1.01249 1.17917 0.92297 0.92177 0.90917 1.22184 0.99787 0.98330 1.01255 1.21325 1.31603 1.12235 0.90484 0.92055 1.25698 0.95156 0.95667 1.01718 1.69957 1.37240 1.23730 1.23810 0.85544 0.78068 0.78735 0.79516 1.18972 1.20906 1.20776 1.30541 1.12234 1.13178 1.16259 1.05169 0.74346 0.74707 0.75502 1.93590 1.29809 1.86296 1.85351 1.93475 1.78807 1.39556 1.86264 1.57724 1.28937 1.48721 1.48061 1.21945 0.83175 1.03775 0.94962 1.22018 0.99572 0.91690 0.91449 1.87634 1.17105 1.58784 1.63369 1.23467 0.83547 0.98015 1.00578 1.23893 0.85481 0.96889 0.94668 0.88301 1.86910 1.28372 1.84184 1.37582 1.20824 0.94646 0.88376 0.96573 0.94907 0.91161 0.94460 0.94063 0.91111 0.94986 0.92901 0.84951 0.85366 0.86706 0.87624 0.86054 0.93383 0.88010 0.93553 0.76650 0.91576 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.05 7.77 71.98 0.56 -7.49 16 2 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 3 C -0.16 -7.98 7.77 71.98 0.56 -7.42 16 4 C -0.52 -27.46 8.01 25.60 0.21 -27.26 16 5 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 6 C 0.02 0.91 5.15 84.65 0.44 1.34 16 7 N -0.91 -51.04 9.35 21.45 0.20 -50.84 16 8 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C -0.59 -23.17 5.12 71.99 0.37 -22.80 16 13 S 2.61 97.29 4.40 -56.49 -0.25 97.04 16 14 O -0.96 -41.24 13.09 -120.53 -1.58 -42.82 16 15 O -0.99 -41.02 14.43 -127.65 -1.84 -42.86 16 16 N -1.00 -26.84 2.84 -520.58 -1.48 -28.32 16 17 C 0.08 1.71 6.20 83.79 0.52 2.23 16 18 C 0.03 0.58 6.01 70.10 0.42 1.00 16 19 O -0.35 -6.90 10.24 -137.22 -1.40 -8.30 16 20 C 0.02 0.43 6.03 72.73 0.44 0.87 16 21 C 0.05 1.10 4.23 31.96 0.14 1.24 16 22 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 23 O -0.56 -14.92 11.71 -131.98 -1.54 -16.46 16 24 C 0.12 2.91 4.54 87.56 0.40 3.31 16 25 H 0.03 1.61 5.46 -2.39 -0.01 1.60 16 26 H 0.07 3.92 6.07 -2.38 -0.01 3.90 16 27 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 30 H 0.03 1.55 5.46 -2.39 -0.01 1.53 16 31 H 0.26 14.00 8.31 -92.71 -0.77 13.22 16 32 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16 33 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.11 2.19 7.24 -2.39 -0.02 2.17 16 36 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.05 1.07 6.77 -2.39 -0.02 1.06 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.09 6.66 -2.39 -0.02 1.07 16 40 H 0.39 6.42 9.09 -74.06 -0.67 5.74 16 41 H 0.07 1.74 7.72 -2.39 -0.02 1.72 16 42 H 0.11 2.01 7.99 -2.39 -0.02 1.99 16 Total: -1.00 -72.20 327.99 -1.50 -73.70 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.36 Total: 25.89 kcal Atomic # 6 Polarization: -55.61 SS G_CDS: 4.01 Total: -51.60 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -1.28 Total: -79.16 kcal Atomic # 8 Polarization: -104.08 SS G_CDS: -6.37 Total: -110.45 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 97.29 SS G_CDS: -0.25 Total: 97.04 kcal Total: -72.20 -1.50 -73.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582014528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.617 kcal (2) G-P(sol) polarization free energy of solvation -72.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds