Wall clock time and date at job start Fri Apr 10 2020 14:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99686 * 2 1 4 4 H 1.09001 * 110.56481 * 332.67948 * 3 2 1 5 5 C 1.54797 * 110.55438 * 95.51914 * 3 2 1 6 6 O 1.44423 * 104.80026 * 142.65999 * 5 3 2 7 7 C 1.44427 * 105.27958 * 319.41351 * 6 5 3 8 8 C 1.54479 * 104.80131 * 40.51358 * 7 6 5 9 9 H 1.09001 * 110.51167 * 94.80277 * 8 7 6 10 10 S 1.81396 * 110.51028 * 217.37733 * 8 7 6 11 11 O 1.42098 * 110.54301 * 190.06613 * 10 8 7 12 12 O 1.42104 * 110.54276 * 53.31806 * 10 8 7 13 13 N 1.65597 * 104.45128 * 301.69394 * 10 8 7 14 14 C 1.46499 * 119.99949 * 64.99795 * 13 10 8 15 15 C 1.53004 * 109.47198 * 165.00663 * 14 13 10 16 16 C 1.52998 * 109.47200 * 59.99818 * 15 14 13 17 17 C 1.53005 * 109.46471 * 299.99791 * 15 14 13 18 18 C 1.50701 * 109.47211 * 180.02562 * 15 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 15 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 H 1.08998 * 109.46593 * 299.99464 * 1 2 3 27 27 H 1.08993 * 109.47340 * 59.99549 * 1 2 3 28 28 H 1.09006 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.09000 * 110.43369 * 23.80224 * 5 3 2 30 30 H 1.08993 * 110.40258 * 261.50591 * 5 3 2 31 31 H 1.08995 * 110.37061 * 281.67963 * 7 6 5 32 32 H 1.09001 * 110.36998 * 159.34062 * 7 6 5 33 33 H 0.97004 * 120.00110 * 245.00411 * 13 10 8 34 34 H 1.09000 * 109.47602 * 45.00213 * 14 13 10 35 35 H 1.09007 * 109.47337 * 284.99928 * 14 13 10 36 36 H 1.09004 * 109.46783 * 180.02562 * 16 15 14 37 37 H 1.09005 * 109.46870 * 300.00189 * 16 15 14 38 38 H 1.08998 * 109.47156 * 60.00128 * 16 15 14 39 39 H 1.08995 * 109.47438 * 299.99599 * 17 15 14 40 40 H 1.08996 * 109.47069 * 60.00459 * 17 15 14 41 41 H 1.09004 * 109.46658 * 179.97438 * 17 15 14 42 42 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3376 2.0240 -0.4684 5 6 2.3586 1.7453 1.4427 6 8 3.6003 2.4722 1.3171 7 6 4.3844 1.7239 0.3626 8 6 3.3753 1.2904 -0.7237 9 1 3.3768 1.9998 -1.5513 10 16 3.7606 -0.3792 -1.3191 11 8 2.9865 -0.6893 -2.4696 12 8 3.8516 -1.2882 -0.2305 13 7 5.3116 -0.2673 -1.8883 14 6 6.4116 0.0229 -0.9652 15 6 7.7452 -0.2922 -1.6458 16 6 7.8928 0.5689 -2.9018 17 6 7.7823 -1.7716 -2.0343 18 6 8.8766 0.0057 -0.6960 19 1 8.6656 0.3826 0.2939 20 6 10.1813 -0.1969 -1.0929 21 7 10.4383 -0.6555 -2.2984 22 14 11.5841 0.1798 0.0817 23 1 11.9003 -1.0319 0.8799 24 1 12.7829 0.5883 -0.6937 25 1 11.1844 1.2822 0.9927 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.4921 0.8743 2.0843 30 1 1.5782 2.3934 1.8413 31 1 4.8285 0.8498 0.8387 32 1 5.1596 2.3562 -0.0703 33 1 5.4919 -0.3938 -2.8331 34 1 6.3064 -0.5905 -0.0703 35 1 6.3851 1.0769 -0.6884 36 1 8.8427 0.3440 -3.3868 37 1 7.0744 0.3529 -3.5886 38 1 7.8663 1.6228 -2.6249 39 1 7.6771 -2.3851 -1.1396 40 1 6.9639 -1.9875 -2.7212 41 1 8.7322 -1.9960 -2.5196 42 1 11.3562 -0.7977 -2.5778 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591699151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:41 Heat of formation + Delta-G solvation = -155.339194 kcal Electronic energy + Delta-G solvation = -25429.210889 eV Core-core repulsion = 21730.247580 eV Total energy + Delta-G solvation = -3698.963309 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01057 -37.60931 -36.97402 -36.64842 -35.56711 -33.27071 -31.90131 -30.54423 -29.17430 -26.88962 -25.69317 -25.56252 -24.59662 -23.40320 -22.03265 -19.16711 -18.92383 -18.03116 -17.31051 -16.97944 -16.09788 -15.80672 -15.62230 -15.51224 -15.22258 -14.86485 -14.67385 -14.41031 -13.94938 -13.49942 -13.06496 -12.88414 -12.52792 -12.24299 -12.13564 -11.91895 -11.79791 -11.75268 -11.61091 -11.46217 -11.45636 -11.09399 -10.92449 -10.67209 -10.52300 -10.37141 -10.27441 -10.15810 -9.95107 -9.63978 -9.31870 -8.82422 -8.75833 -8.36180 -6.00650 -4.11748 0.48133 3.00982 3.14496 3.28837 3.36150 3.38830 3.59216 3.90839 4.14803 4.19767 4.39773 4.59631 4.63592 4.90544 4.93506 5.00552 5.05239 5.25972 5.28875 5.38677 5.44354 5.45989 5.53603 5.77421 6.11894 6.31374 6.44462 6.49126 6.62447 6.75278 6.92857 7.00338 7.08602 7.35929 7.53530 7.60285 7.71035 8.04392 8.16027 8.39974 8.88588 9.54252 11.00443 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.004422 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.571344 B = 6330.511825 C = 7024.275058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.082 3.918 4 H 0.095 0.905 5 C 0.026 3.974 6 O -0.358 6.358 7 C 0.072 3.928 8 C -0.649 4.649 9 H 0.152 0.848 10 S 2.640 3.360 11 O -0.964 6.964 12 O -0.938 6.938 13 N -1.112 6.112 14 C 0.118 3.882 15 C 0.064 3.936 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.509 4.509 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.884 5.884 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.274 1.274 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.416 0.584 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.008 0.992 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.010 0.990 41 H 0.083 0.917 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.821 5.332 2.898 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C 0.022 3.978 4 H 0.113 0.887 5 C -0.052 4.052 6 O -0.276 6.276 7 C -0.005 4.005 8 C -0.755 4.755 9 H 0.170 0.830 10 S 2.727 3.273 11 O -0.954 6.954 12 O -0.928 6.928 13 N -0.875 5.875 14 C -0.007 4.007 15 C 0.062 3.938 16 C -0.190 4.190 17 C -0.190 4.190 18 C -0.548 4.548 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.253 0.747 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.027 0.973 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.029 0.971 41 H 0.102 0.898 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.085 4.613 3.113 17.969 hybrid contribution 0.738 0.966 0.078 1.218 sum -16.347 5.578 3.191 17.565 Atomic orbital electron populations 1.22926 0.78781 1.04006 1.00603 1.87846 1.22147 1.26460 1.94884 1.23262 0.92239 0.86159 0.96145 0.88721 1.24005 0.87734 0.97798 0.95671 1.89155 1.27721 1.48095 1.62658 1.23459 0.92426 0.98196 0.86451 1.32243 1.03232 1.29798 1.10200 0.82984 1.04248 0.72888 0.75788 0.74401 1.93528 1.70295 1.82411 1.49205 1.93565 1.85465 1.56835 1.56913 1.55697 1.23564 1.88437 1.19789 1.21867 0.88137 0.98694 0.91959 1.18263 0.89017 0.93113 0.93439 1.21844 1.01376 0.97865 0.97949 1.21814 1.01063 0.97314 0.98769 1.21007 0.90292 1.44063 0.99425 0.92382 1.24880 0.98645 0.94824 0.95109 1.69811 1.19482 1.45253 1.17685 0.86596 0.81788 0.78660 0.80930 1.20706 1.21346 1.19923 0.93128 0.93101 0.88577 0.90031 0.88149 0.89908 0.86414 0.74710 0.91286 0.92941 0.89532 0.97258 0.95440 0.95312 0.97085 0.89800 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.37 16 2 O -0.39 -5.05 8.23 -49.90 -0.41 -5.46 16 3 C 0.08 0.93 3.61 -24.99 -0.09 0.84 16 4 H 0.09 0.81 7.82 -51.93 -0.41 0.41 16 5 C 0.03 0.28 7.39 38.10 0.28 0.56 16 6 O -0.36 -4.79 11.65 -35.23 -0.41 -5.20 16 7 C 0.07 0.95 5.41 37.93 0.21 1.16 16 8 C -0.65 -8.26 3.85 -25.16 -0.10 -8.36 16 9 H 0.15 1.54 8.14 -51.93 -0.42 1.12 16 10 S 2.64 43.51 3.91 -107.50 -0.42 43.09 16 11 O -0.96 -17.79 18.08 -57.60 -1.04 -18.83 16 12 O -0.94 -18.27 16.50 -64.04 -1.06 -19.33 16 13 N -1.11 -18.93 5.22 -10.61 -0.06 -18.99 16 14 C 0.12 2.25 3.48 -4.04 -0.01 2.23 16 15 C 0.06 1.44 0.51 -155.66 -0.08 1.36 16 16 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 17 C -0.13 -3.07 8.09 37.16 0.30 -2.77 16 18 C -0.51 -12.83 8.01 -34.44 -0.28 -13.11 16 19 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -23.36 9.35 55.43 0.52 -22.84 16 22 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.17 6.40 -51.93 -0.33 0.84 16 32 H 0.12 1.41 6.99 -51.93 -0.36 1.05 16 33 H 0.42 6.91 6.44 -34.47 -0.22 6.69 16 34 H 0.07 1.35 7.49 -51.93 -0.39 0.96 16 35 H 0.05 0.88 5.66 -51.93 -0.29 0.59 16 36 H 0.09 2.12 6.06 -51.93 -0.31 1.81 16 37 H 0.01 0.17 6.60 -51.93 -0.34 -0.18 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.01 0.22 7.19 -51.93 -0.37 -0.16 16 41 H 0.08 2.13 6.08 -51.93 -0.32 1.82 16 42 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -31.60 336.05 -7.57 -39.17 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.27 Total: 5.71 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 1.53 Total: -17.67 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.46 Total: -41.83 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -2.92 Total: -48.81 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 43.51 SS G_CDS: -0.42 Total: 43.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.60 -7.57 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591699151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.169 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds