Wall clock time and date at job start Fri Apr 10 2020 14:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99686 * 2 1 4 4 H 1.09001 * 110.56481 * 332.67948 * 3 2 1 5 5 C 1.54797 * 110.55438 * 95.51914 * 3 2 1 6 6 O 1.44423 * 104.80026 * 142.65999 * 5 3 2 7 7 C 1.44427 * 105.27958 * 319.41351 * 6 5 3 8 8 C 1.54479 * 104.80131 * 40.51358 * 7 6 5 9 9 H 1.09001 * 110.51167 * 94.80277 * 8 7 6 10 10 S 1.81396 * 110.51028 * 217.37733 * 8 7 6 11 11 O 1.42098 * 110.54301 * 190.06613 * 10 8 7 12 12 O 1.42104 * 110.54276 * 53.31806 * 10 8 7 13 13 N 1.65597 * 104.45128 * 301.69394 * 10 8 7 14 14 C 1.46499 * 119.99949 * 64.99795 * 13 10 8 15 15 C 1.53004 * 109.47198 * 165.00663 * 14 13 10 16 16 C 1.52998 * 109.47200 * 59.99818 * 15 14 13 17 17 C 1.53005 * 109.46471 * 299.99791 * 15 14 13 18 18 C 1.50701 * 109.47211 * 180.02562 * 15 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 15 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 H 1.08998 * 109.46593 * 299.99464 * 1 2 3 27 27 H 1.08993 * 109.47340 * 59.99549 * 1 2 3 28 28 H 1.09006 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.09000 * 110.43369 * 23.80224 * 5 3 2 30 30 H 1.08993 * 110.40258 * 261.50591 * 5 3 2 31 31 H 1.08995 * 110.37061 * 281.67963 * 7 6 5 32 32 H 1.09001 * 110.36998 * 159.34062 * 7 6 5 33 33 H 0.97004 * 120.00110 * 245.00411 * 13 10 8 34 34 H 1.09000 * 109.47602 * 45.00213 * 14 13 10 35 35 H 1.09007 * 109.47337 * 284.99928 * 14 13 10 36 36 H 1.09004 * 109.46783 * 180.02562 * 16 15 14 37 37 H 1.09005 * 109.46870 * 300.00189 * 16 15 14 38 38 H 1.08998 * 109.47156 * 60.00128 * 16 15 14 39 39 H 1.08995 * 109.47438 * 299.99599 * 17 15 14 40 40 H 1.08996 * 109.47069 * 60.00459 * 17 15 14 41 41 H 1.09004 * 109.46658 * 179.97438 * 17 15 14 42 42 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3376 2.0240 -0.4684 5 6 2.3586 1.7453 1.4427 6 8 3.6003 2.4722 1.3171 7 6 4.3844 1.7239 0.3626 8 6 3.3753 1.2904 -0.7237 9 1 3.3768 1.9998 -1.5513 10 16 3.7606 -0.3792 -1.3191 11 8 2.9865 -0.6893 -2.4696 12 8 3.8516 -1.2882 -0.2305 13 7 5.3116 -0.2673 -1.8883 14 6 6.4116 0.0229 -0.9652 15 6 7.7452 -0.2922 -1.6458 16 6 7.8928 0.5689 -2.9018 17 6 7.7823 -1.7716 -2.0343 18 6 8.8766 0.0057 -0.6960 19 1 8.6656 0.3826 0.2939 20 6 10.1813 -0.1969 -1.0929 21 7 10.4383 -0.6555 -2.2984 22 14 11.5841 0.1798 0.0817 23 1 11.9003 -1.0319 0.8799 24 1 12.7829 0.5883 -0.6937 25 1 11.1844 1.2822 0.9927 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.4921 0.8743 2.0843 30 1 1.5782 2.3934 1.8413 31 1 4.8285 0.8498 0.8387 32 1 5.1596 2.3562 -0.0703 33 1 5.4919 -0.3938 -2.8331 34 1 6.3064 -0.5905 -0.0703 35 1 6.3851 1.0769 -0.6884 36 1 8.8427 0.3440 -3.3868 37 1 7.0744 0.3529 -3.5886 38 1 7.8663 1.6228 -2.6249 39 1 7.6771 -2.3851 -1.1396 40 1 6.9639 -1.9875 -2.7212 41 1 8.7322 -1.9960 -2.5196 42 1 11.3562 -0.7977 -2.5778 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591699151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:40 Heat of formation + Delta-G solvation = -179.724603 kcal Electronic energy + Delta-G solvation = -25430.268320 eV Core-core repulsion = 21730.247580 eV Total energy + Delta-G solvation = -3700.020739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91306 -38.78138 -38.29374 -38.06485 -36.95416 -34.95222 -32.89388 -32.29919 -30.06353 -27.55865 -27.49590 -27.37561 -26.28046 -24.40277 -22.97053 -20.72922 -20.38399 -19.10151 -18.50650 -18.09281 -17.62813 -17.02432 -16.85720 -16.58810 -16.55124 -16.11932 -15.75056 -15.52374 -15.20526 -14.98798 -14.80178 -14.00213 -13.85246 -13.39570 -13.31415 -13.25484 -13.13837 -13.07570 -12.97286 -12.86397 -12.70986 -12.65282 -12.47411 -12.33803 -12.23352 -12.04857 -11.61688 -11.40275 -11.21190 -11.01373 -10.80435 -10.63089 -10.37385 -10.17197 -7.95312 -6.11469 -0.78383 1.47115 1.50565 1.57552 1.79766 2.32909 2.50260 2.58615 2.85750 3.11174 3.16928 3.28802 3.64067 3.78298 3.94633 3.96989 4.21715 4.36618 4.46750 4.48713 4.54415 4.59217 4.62999 4.66738 4.78558 4.82093 4.85421 5.10358 5.14135 5.26077 5.29257 5.42862 5.55209 5.73073 5.74487 5.87708 6.10440 6.21097 6.31455 6.49590 6.95780 7.56541 9.03552 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.004422 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.571344 B = 6330.511825 C = 7024.275058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.427 6.427 3 C 0.076 3.924 4 H 0.131 0.869 5 C 0.020 3.980 6 O -0.368 6.368 7 C 0.065 3.935 8 C -0.631 4.631 9 H 0.186 0.814 10 S 2.644 3.356 11 O -0.987 6.987 12 O -0.978 6.978 13 N -1.114 6.114 14 C 0.128 3.872 15 C 0.052 3.948 16 C -0.125 4.125 17 C -0.126 4.126 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.024 3.976 21 N -0.904 5.904 22 Si 0.944 3.056 23 H -0.285 1.285 24 H -0.288 1.288 25 H -0.267 1.267 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.418 0.582 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.015 0.985 40 H 0.027 0.973 41 H 0.059 0.941 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.464 7.370 3.311 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.348 6.348 3 C 0.017 3.983 4 H 0.149 0.851 5 C -0.057 4.057 6 O -0.286 6.286 7 C -0.012 4.012 8 C -0.741 4.741 9 H 0.203 0.797 10 S 2.736 3.264 11 O -0.978 6.978 12 O -0.968 6.968 13 N -0.875 5.875 14 C 0.003 3.997 15 C 0.051 3.949 16 C -0.182 4.182 17 C -0.184 4.184 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.175 4.175 21 N -0.543 5.543 22 Si 0.771 3.229 23 H -0.211 1.211 24 H -0.214 1.214 25 H -0.192 1.192 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.726 6.604 3.512 20.165 hybrid contribution 1.155 0.333 -0.016 1.202 sum -17.571 6.937 3.496 19.212 Atomic orbital electron populations 1.23222 0.76833 1.04853 1.02604 1.87821 1.24462 1.27412 1.95062 1.23533 0.91910 0.86636 0.96245 0.85105 1.24221 0.87725 0.98119 0.95618 1.89148 1.28640 1.48244 1.62603 1.23508 0.93004 0.98051 0.86684 1.32073 1.04438 1.26349 1.11257 0.79662 1.03826 0.72151 0.77006 0.73378 1.93495 1.70381 1.83773 1.50132 1.93515 1.85709 1.59900 1.57677 1.55559 1.23472 1.89013 1.19489 1.21625 0.86826 0.99938 0.91336 1.18320 0.90341 0.92532 0.93750 1.21696 1.00735 0.98047 0.97769 1.21723 1.00313 0.98086 0.98283 1.21367 0.91297 1.43578 0.99879 0.92417 1.25501 1.00644 0.95089 0.96277 1.69947 1.19494 1.46033 1.18799 0.85779 0.79441 0.78333 0.79340 1.21095 1.21428 1.19188 0.90606 0.91609 0.88521 0.91229 0.84679 0.91502 0.85027 0.74549 0.92512 0.90464 0.92450 0.94832 0.94685 0.96542 0.95439 0.92238 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.85 113.37 1.23 1.51 16 2 O -0.43 -10.12 8.23 -134.95 -1.11 -11.23 16 3 C 0.08 1.49 3.61 31.72 0.11 1.60 16 4 H 0.13 1.60 7.82 -2.39 -0.02 1.58 16 5 C 0.02 0.39 7.39 72.60 0.54 0.92 16 6 O -0.37 -8.83 11.65 -148.98 -1.74 -10.57 16 7 C 0.06 1.58 5.41 72.48 0.39 1.97 16 8 C -0.63 -14.28 3.85 31.61 0.12 -14.16 16 9 H 0.19 2.95 8.14 -2.39 -0.02 2.93 16 10 S 2.64 84.49 3.91 -56.49 -0.22 84.27 16 11 O -0.99 -35.46 18.08 -127.59 -2.31 -37.77 16 12 O -0.98 -38.38 16.50 -121.44 -2.00 -40.39 16 13 N -1.11 -36.71 5.22 -187.48 -0.98 -37.69 16 14 C 0.13 4.75 3.48 86.38 0.30 5.05 16 15 C 0.05 2.35 0.51 -52.93 -0.03 2.32 16 16 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 17 C -0.13 -5.95 8.09 71.98 0.58 -5.36 16 18 C -0.52 -26.27 8.01 25.60 0.21 -26.06 16 19 H 0.06 2.83 7.74 -2.91 -0.02 2.81 16 20 C 0.02 1.25 5.15 84.65 0.44 1.69 16 21 N -0.90 -48.41 9.35 21.45 0.20 -48.21 16 22 Si 0.94 41.68 29.54 68.60 2.03 43.71 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.73 8.11 -2.39 -0.02 0.71 16 28 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 30 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.84 6.40 -2.39 -0.02 1.83 16 32 H 0.13 2.78 6.99 -2.39 -0.02 2.76 16 33 H 0.42 13.36 6.44 -96.74 -0.62 12.73 16 34 H 0.06 2.23 7.49 -2.39 -0.02 2.22 16 35 H 0.08 2.46 5.66 -2.38 -0.01 2.44 16 36 H 0.06 2.81 6.06 -2.38 -0.01 2.79 16 37 H 0.03 1.23 6.60 -2.38 -0.02 1.21 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.03 1.15 7.19 -2.39 -0.02 1.13 16 41 H 0.06 3.09 6.08 -2.38 -0.01 3.07 16 42 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 Total: -1.00 -68.54 336.05 -1.25 -69.79 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.41 Total: 23.35 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 4.47 Total: -35.26 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -0.78 Total: -85.89 kcal Atomic # 8 Polarization: -92.80 SS G_CDS: -7.16 Total: -99.96 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 84.49 SS G_CDS: -0.22 Total: 84.27 kcal Total: -68.54 -1.25 -69.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591699151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.932 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds