Wall clock time and date at job start Fri Apr 10 2020 14:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46833 * 2 1 4 4 H 1.09001 * 109.46981 * 55.41080 * 3 2 1 5 5 C 1.53005 * 109.46706 * 175.40731 * 3 2 1 6 6 S 1.81400 * 109.46614 * 185.28745 * 5 3 2 7 7 O 1.42107 * 110.54329 * 62.04481 * 6 5 3 8 8 O 1.42093 * 110.54601 * 285.29133 * 6 5 3 9 9 N 1.65603 * 104.44584 * 173.66745 * 6 5 3 10 10 C 1.47025 * 125.65009 * 270.03861 * 9 6 5 11 11 C 1.54321 * 107.27059 * 181.02565 * 10 9 6 12 12 C 1.55153 * 102.94413 * 22.19676 * 11 10 9 13 13 O 1.42899 * 111.03727 * 82.58594 * 12 11 10 14 14 C 1.50702 * 111.00364 * 206.42178 * 12 11 10 15 15 H 1.08011 * 119.99676 * 112.19632 * 14 12 11 16 16 C 1.37872 * 120.00077 * 292.19843 * 14 12 11 17 17 N 1.31506 * 120.00087 * 359.72032 * 16 14 12 18 18 Si 1.86806 * 119.99845 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46979 * 89.99680 * 18 16 14 20 20 H 1.48498 * 109.46644 * 209.99766 * 18 16 14 21 21 H 1.48495 * 109.46987 * 329.99497 * 18 16 14 22 22 C 1.47426 * 125.64947 * 90.00550 * 9 6 5 23 23 O 1.42894 * 109.46894 * 295.40560 * 3 2 1 24 24 C 1.42910 * 113.99901 * 108.93388 * 23 3 2 25 25 H 1.09002 * 109.47272 * 179.31954 * 1 2 3 26 26 H 1.09005 * 109.47066 * 299.31626 * 1 2 3 27 27 H 1.08995 * 109.47264 * 59.32175 * 1 2 3 28 28 H 1.08996 * 109.47084 * 239.99663 * 2 1 3 29 29 H 1.09004 * 109.46733 * 120.00073 * 2 1 3 30 30 H 1.09002 * 109.46925 * 65.29097 * 5 3 2 31 31 H 1.08998 * 109.47098 * 305.28460 * 5 3 2 32 32 H 1.09002 * 109.88441 * 300.44680 * 10 9 6 33 33 H 1.09005 * 109.87994 * 61.45292 * 10 9 6 34 34 H 1.09008 * 110.72018 * 263.83013 * 11 10 9 35 35 H 1.09001 * 110.72163 * 140.56212 * 11 10 9 36 36 H 0.96695 * 114.00189 * 64.60832 * 13 12 11 37 37 H 0.97005 * 120.00178 * 180.02562 * 17 16 14 38 38 H 1.08999 * 110.36589 * 37.05763 * 22 9 6 39 39 H 1.09004 * 110.36255 * 274.74182 * 22 9 6 40 40 H 1.09001 * 109.47179 * 185.17740 * 24 23 3 41 41 H 1.09001 * 109.46725 * 305.17804 * 24 23 3 42 42 H 1.09001 * 109.47134 * 65.17646 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6110 1.9795 0.8460 5 6 3.5656 1.4440 0.1155 6 16 4.1583 3.1513 0.2728 7 8 3.6450 3.7504 1.4548 8 8 4.0872 3.8211 -0.9783 9 7 5.7816 2.9999 0.5634 10 6 6.4080 2.8867 1.8887 11 6 7.9325 2.7934 1.6685 12 6 8.1204 3.4281 0.2652 13 8 8.1663 4.8539 0.3491 14 6 9.3553 2.8896 -0.4102 15 1 9.2625 2.2627 -1.2849 16 6 10.6034 3.1970 0.0884 17 7 10.7165 3.9646 1.1501 18 14 12.1341 2.5300 -0.7494 19 1 12.5867 3.4886 -1.7893 20 1 13.2099 2.3478 0.2579 21 1 11.8223 1.2235 -1.3825 22 6 6.8379 2.9558 -0.4640 23 8 1.6537 2.0842 -1.2170 24 6 0.6351 3.0734 -1.0546 25 1 -0.3634 -1.0276 -0.0122 26 1 -0.3633 0.5032 0.8961 27 1 -0.3633 0.5243 -0.8838 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9979 0.9901 -0.7762 31 1 3.8640 0.8734 0.9949 32 1 6.1729 3.7675 2.4863 33 1 6.0483 1.9899 2.3933 34 1 8.2592 1.7534 1.6683 35 1 8.4674 3.3665 2.4257 36 1 8.9266 5.1947 0.8398 37 1 11.5947 4.1812 1.5007 38 1 6.5974 3.6315 -1.2847 39 1 6.9648 1.9383 -0.8341 40 1 0.3331 3.4478 -2.0327 41 1 -0.2254 2.6299 -0.5537 42 1 1.0208 3.8968 -0.4535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:47 Heat of formation + Delta-G solvation = -168.879679 kcal Electronic energy + Delta-G solvation = -24885.413564 eV Core-core repulsion = 21185.863096 eV Total energy + Delta-G solvation = -3699.550468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.89578 -38.00566 -36.77350 -35.59357 -34.24554 -33.95487 -32.11105 -30.74666 -29.24549 -28.25336 -26.82564 -24.87253 -24.22526 -21.72573 -21.27612 -19.79570 -18.50230 -17.50027 -17.28200 -17.00428 -16.34063 -15.83924 -15.45133 -14.95662 -14.84314 -14.45959 -14.14581 -14.09616 -13.53299 -13.33683 -13.16174 -12.79206 -12.65843 -12.43649 -12.21259 -11.90507 -11.77034 -11.71854 -11.66103 -11.60741 -11.47858 -11.29137 -11.03840 -10.99936 -10.79973 -10.64072 -10.50430 -10.41617 -10.02498 -9.79897 -9.39549 -8.66680 -8.31757 -8.15319 -6.27607 -4.35347 0.48634 3.00829 3.20628 3.28156 3.30649 3.38927 4.04672 4.25844 4.37437 4.40594 4.53306 4.68469 4.95917 4.99098 5.05700 5.11181 5.18633 5.20489 5.41348 5.44676 5.52871 5.64289 5.65819 5.79290 5.80260 5.95895 5.97131 6.00528 6.25017 6.44199 6.63855 6.81481 6.86038 6.93444 7.05984 7.34171 7.36903 7.75835 8.04050 8.66354 9.33691 9.54059 10.80259 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.003685 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.160264 B = 7597.546022 C = 7810.667935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.129 4.129 3 C 0.098 3.902 4 H 0.078 0.922 5 C -0.648 4.648 6 S 2.623 3.377 7 O -0.963 6.963 8 O -0.942 6.942 9 N -1.006 6.006 10 C 0.122 3.878 11 C -0.136 4.136 12 C 0.253 3.747 13 O -0.583 6.583 14 C -0.536 4.536 15 H 0.065 0.935 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.128 3.872 23 O -0.377 6.377 24 C 0.019 3.981 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.384 0.616 37 H 0.269 0.731 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.919 -7.529 0.842 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.168 4.168 3 C 0.039 3.961 4 H 0.096 0.904 5 C -0.775 4.775 6 S 2.717 3.283 7 O -0.954 6.954 8 O -0.932 6.932 9 N -0.845 5.845 10 C -0.003 4.003 11 C -0.176 4.176 12 C 0.212 3.788 13 O -0.393 6.393 14 C -0.575 4.575 15 H 0.084 0.916 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.003 3.997 23 O -0.296 6.296 24 C -0.077 4.077 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.236 0.764 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.834 -6.734 0.362 18.135 hybrid contribution 1.454 -1.067 0.268 1.823 sum -15.380 -7.801 0.630 17.257 Atomic orbital electron populations 1.21832 0.95353 1.02153 1.02075 1.21872 0.96472 0.95065 1.03391 1.21794 0.90398 0.95761 0.88177 0.90448 1.31065 1.04915 1.29348 1.12221 1.04546 0.72556 0.77020 0.74217 1.93551 1.79300 1.73596 1.48929 1.93581 1.85160 1.70203 1.44241 1.58450 1.22040 1.89079 1.14936 1.21798 0.96280 0.99470 0.82788 1.23207 0.90517 1.01868 1.02009 1.19554 0.90126 0.79701 0.89456 1.86112 1.52035 1.21701 1.79406 1.21520 0.90530 1.31756 1.13647 0.91633 1.24993 0.99322 0.94333 0.94390 1.69570 1.24806 1.36714 1.22565 0.86407 0.81880 0.79390 0.79204 1.20404 1.21112 1.19756 1.22214 0.86870 1.00150 0.90423 1.88030 1.57246 1.54286 1.30045 1.23051 0.90371 0.90780 1.03514 0.92234 0.92746 0.92001 0.90482 0.90553 0.84010 0.84166 0.92018 0.93535 0.91464 0.90039 0.76382 0.92105 0.90469 0.91433 0.88687 0.93273 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.21 37.16 0.34 -0.88 16 2 C -0.13 -1.18 5.64 -26.73 -0.15 -1.34 16 3 C 0.10 1.15 2.24 -26.73 -0.06 1.09 16 4 H 0.08 0.83 7.64 -51.93 -0.40 0.44 16 5 C -0.65 -8.06 5.87 37.16 0.22 -7.84 16 6 S 2.62 45.75 5.45 -107.50 -0.59 45.16 16 7 O -0.96 -18.49 17.60 -57.54 -1.01 -19.50 16 8 O -0.94 -19.31 17.12 -57.61 -0.99 -20.30 16 9 N -1.01 -19.32 3.62 -111.42 -0.40 -19.73 16 10 C 0.12 2.29 6.90 -3.06 -0.02 2.27 16 11 C -0.14 -2.93 5.64 -24.90 -0.14 -3.08 16 12 C 0.25 6.14 0.88 -89.63 -0.08 6.06 16 13 O -0.58 -15.31 13.16 -35.23 -0.46 -15.77 16 14 C -0.54 -13.77 8.25 -34.44 -0.28 -14.05 16 15 H 0.07 1.65 7.77 -52.48 -0.41 1.24 16 16 C 0.07 1.84 5.31 -17.82 -0.09 1.74 16 17 N -0.90 -23.12 10.81 55.43 0.60 -22.52 16 18 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C 0.13 2.73 6.25 -2.53 -0.02 2.71 16 23 O -0.38 -4.96 9.55 -35.23 -0.34 -5.29 16 24 C 0.02 0.20 10.34 101.05 1.04 1.25 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.50 6.85 -51.93 -0.36 0.14 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.14 1.65 8.14 -51.92 -0.42 1.22 16 31 H 0.14 1.38 8.14 -51.92 -0.42 0.95 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.40 8.03 -51.92 -0.42 0.98 16 35 H 0.08 1.85 7.85 -51.93 -0.41 1.44 16 36 H 0.38 10.12 7.00 45.56 0.32 10.44 16 37 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.08 1.73 7.67 -51.93 -0.40 1.33 16 39 H 0.07 1.28 8.01 -51.93 -0.42 0.87 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.40 6.88 -51.93 -0.36 0.04 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -31.27 352.11 -8.34 -39.61 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.20 Total: 10.15 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 0.76 Total: -12.07 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.20 Total: -42.25 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -2.80 Total: -60.87 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 45.75 SS G_CDS: -0.59 Total: 45.16 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.27 -8.34 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.266 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds