Wall clock time and date at job start Fri Apr 10 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47237 * 2 1 4 4 C 1.50700 * 109.47228 * 239.99523 * 2 1 3 5 5 H 1.07993 * 120.00365 * 240.00060 * 4 2 1 6 6 C 1.37878 * 119.99657 * 60.00416 * 4 2 1 7 7 N 1.31512 * 119.99889 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99921 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46987 * 89.99989 * 8 6 4 10 10 H 1.48494 * 109.47182 * 209.99756 * 8 6 4 11 11 H 1.48502 * 109.47299 * 330.00243 * 8 6 4 12 12 C 1.53010 * 109.46827 * 119.99829 * 2 1 3 13 13 S 1.81397 * 109.47098 * 299.99818 * 12 2 1 14 14 O 1.42102 * 110.54022 * 68.37817 * 13 12 2 15 15 O 1.42097 * 110.54509 * 291.62993 * 13 12 2 16 16 N 1.65596 * 104.44963 * 179.97438 * 13 12 2 17 17 C 1.46506 * 119.99829 * 64.99969 * 16 13 12 18 18 H 1.09004 * 109.52043 * 25.00616 * 17 16 13 19 19 C 1.53091 * 109.52537 * 264.87646 * 17 16 13 20 20 O 1.42903 * 109.41199 * 182.55175 * 19 17 16 21 21 C 1.42910 * 114.15461 * 61.06006 * 20 19 17 22 22 C 1.53092 * 109.41400 * 298.87484 * 21 20 19 23 23 C 1.53181 * 109.51843 * 145.12701 * 17 16 13 24 24 H 1.08991 * 109.54450 * 57.02417 * 23 17 16 25 25 O 1.42903 * 109.54402 * 296.74884 * 23 17 16 26 26 H 1.09000 * 109.47476 * 299.99997 * 1 2 3 27 27 H 1.09004 * 109.46942 * 60.00174 * 1 2 3 28 28 H 1.09007 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47127 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47332 * 300.00153 * 3 2 1 31 31 H 1.09000 * 109.46885 * 59.99641 * 3 2 1 32 32 H 0.97003 * 119.99765 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46653 * 180.02562 * 12 2 1 34 34 H 1.08999 * 109.46779 * 59.99957 * 12 2 1 35 35 H 0.97002 * 120.00329 * 245.00723 * 16 13 12 36 36 H 1.09001 * 109.47562 * 302.46924 * 19 17 16 37 37 H 1.08999 * 109.47916 * 62.49884 * 19 17 16 38 38 H 1.08994 * 109.48245 * 178.88890 * 21 20 19 39 39 H 1.08997 * 109.48063 * 58.85616 * 21 20 19 40 40 H 1.09003 * 109.52390 * 297.70524 * 22 21 20 41 41 H 1.08998 * 109.52531 * 177.51678 * 22 21 20 42 42 H 0.96700 * 113.99960 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1197 -4.0078 9 1 1.3448 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1119 11 1 3.6308 -1.7568 -3.7118 12 6 2.0399 -0.7213 1.2494 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0478 1.4101 2.8544 16 7 2.0528 -0.7407 3.9937 17 6 3.5012 -0.7981 4.2061 18 1 3.9684 0.0855 3.7712 19 6 4.0665 -2.0557 3.5407 20 8 5.4693 -2.1404 3.7997 21 6 5.8033 -2.2358 5.1859 22 6 5.3081 -0.9847 5.9160 23 6 3.7967 -0.8464 5.7083 24 1 3.2879 -1.7018 6.1527 25 8 3.3378 0.3583 6.3248 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7088 1.1612 -3.4844 33 1 3.1300 -0.7209 1.2496 34 1 1.6765 -1.7489 1.2493 35 1 1.4556 -1.2151 4.5930 36 1 3.5690 -2.9365 3.9466 37 1 3.8967 -2.0054 2.4652 38 1 6.8849 -2.3159 5.2945 39 1 5.3285 -3.1185 5.6143 40 1 5.8127 -0.1054 5.5154 41 1 5.5227 -1.0753 6.9808 42 1 3.4934 0.3962 7.2784 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601522236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:19 Heat of formation + Delta-G solvation = -170.310109 kcal Electronic energy + Delta-G solvation = -25400.654376 eV Core-core repulsion = 21701.041879 eV Total energy + Delta-G solvation = -3699.612496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.98131 -36.89608 -36.49741 -36.26253 -35.28270 -34.87939 -31.93703 -31.66105 -29.22174 -26.74658 -25.69553 -25.21261 -24.70290 -23.52242 -20.92266 -19.57832 -18.79539 -17.80588 -17.27046 -16.92954 -16.39748 -15.96134 -15.63297 -15.28895 -14.97527 -14.75233 -14.62108 -14.16139 -13.46592 -13.37566 -13.10705 -13.03073 -12.72464 -12.46827 -12.06714 -11.94483 -11.82855 -11.40504 -11.26741 -11.10788 -11.04761 -10.94298 -10.77143 -10.67792 -10.36717 -10.30390 -10.24719 -10.16464 -10.05795 -9.63457 -9.58501 -9.20511 -8.66516 -8.38508 -6.01798 -4.13786 0.85947 3.08614 3.27308 3.34673 3.36893 3.64042 3.81190 4.30820 4.36745 4.39971 4.42581 4.57507 4.72533 4.84181 4.89119 5.08872 5.20082 5.23611 5.30083 5.38754 5.45732 5.51506 5.62975 5.75020 5.80575 5.99197 6.38188 6.71352 6.81463 6.87988 6.92720 7.03404 7.11981 7.33468 7.41201 7.52202 7.69480 7.99846 8.11088 8.34307 8.84623 9.51642 10.99547 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.004736 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.517881 B = 5910.238374 C = 6855.297011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.587 4.587 13 S 2.593 3.407 14 O -0.964 6.964 15 O -0.957 6.957 16 N -1.115 6.115 17 C 0.123 3.877 18 H 0.109 0.891 19 C 0.038 3.962 20 O -0.372 6.372 21 C 0.059 3.941 22 C -0.190 4.190 23 C 0.102 3.898 24 H 0.062 0.938 25 O -0.550 6.550 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.262 0.738 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.412 0.588 36 H 0.062 0.938 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.446 -6.704 17.327 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.081 3.919 3 C -0.222 4.222 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.721 4.721 13 S 2.690 3.310 14 O -0.954 6.954 15 O -0.947 6.947 16 N -0.871 5.871 17 C 0.014 3.986 18 H 0.127 0.873 19 C -0.041 4.041 20 O -0.289 6.289 21 C -0.018 4.018 22 C -0.229 4.229 23 C 0.042 3.958 24 H 0.080 0.920 25 O -0.354 6.354 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.911 -5.558 16.422 18.664 hybrid contribution 0.453 -1.412 0.010 1.483 sum 7.364 -6.970 16.433 19.309 Atomic orbital electron populations 1.22277 0.96911 1.00620 1.02334 1.17923 0.92813 0.92224 0.88950 1.22278 0.99767 0.97776 1.02369 1.20934 1.31712 1.12073 0.89360 0.92264 1.24935 0.94900 0.94962 0.98927 1.69804 1.36324 1.22563 1.23459 0.86535 0.79187 0.79358 0.82553 1.20690 1.21155 1.19927 1.30682 1.11167 1.12998 1.17219 1.05700 0.74421 0.75346 0.75496 1.93552 1.29429 1.86646 1.85779 1.93555 1.77968 1.37881 1.85308 1.55759 1.12682 1.71036 1.47602 1.21456 0.81544 1.00504 0.95098 0.87291 1.23389 0.81667 0.96439 1.02596 1.88028 1.22704 1.94170 1.23964 1.22602 1.01335 0.95879 0.82019 1.23033 0.96862 1.01036 1.01969 1.22027 0.92857 0.87892 0.93058 0.92044 1.86699 1.83977 1.39091 1.25661 0.95410 0.88616 0.94468 0.94416 0.88642 0.95324 0.92758 0.86358 0.86148 0.75556 0.91937 0.86922 0.88210 0.92851 0.89471 0.90135 0.77796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 7.77 37.16 0.29 -3.77 16 2 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 3 C -0.16 -4.09 7.77 37.16 0.29 -3.80 16 4 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.19 9.35 55.43 0.52 -23.67 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 C -0.59 -11.35 4.23 37.16 0.16 -11.19 16 13 S 2.59 49.09 4.47 -107.50 -0.48 48.61 16 14 O -0.96 -20.58 15.70 -57.54 -0.90 -21.48 16 15 O -0.96 -21.04 15.02 -57.54 -0.86 -21.91 16 16 N -1.11 -15.57 5.29 -4.77 -0.03 -15.60 16 17 C 0.12 1.56 2.57 -67.79 -0.17 1.38 16 18 H 0.11 1.61 7.48 -51.93 -0.39 1.22 16 19 C 0.04 0.43 6.41 37.20 0.24 0.67 16 20 O -0.37 -4.29 10.76 -35.23 -0.38 -4.67 16 21 C 0.06 0.47 6.85 37.21 0.25 0.72 16 22 C -0.19 -1.48 5.77 -26.59 -0.15 -1.63 16 23 C 0.10 1.01 3.12 -26.54 -0.08 0.92 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 O -0.55 -6.12 13.25 -35.23 -0.47 -6.59 16 26 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 27 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 28 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 31 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.12 2.07 6.75 -51.92 -0.35 1.72 16 34 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 35 H 0.41 4.81 8.80 -34.47 -0.30 4.51 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 1.34 5.85 -51.93 -0.30 1.04 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.38 2.26 9.09 45.56 0.41 2.67 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -34.27 333.23 -7.71 -41.98 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.48 Total: 9.18 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 0.37 Total: -26.52 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.49 Total: -39.27 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -2.61 Total: -54.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 49.09 SS G_CDS: -0.48 Total: 48.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.27 -7.71 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601522236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.332 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds