Wall clock time and date at job start Fri Apr 10 2020 14:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47237 * 2 1 4 4 C 1.50700 * 109.47228 * 239.99523 * 2 1 3 5 5 H 1.07993 * 120.00365 * 240.00060 * 4 2 1 6 6 C 1.37878 * 119.99657 * 60.00416 * 4 2 1 7 7 N 1.31512 * 119.99889 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99921 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46987 * 89.99989 * 8 6 4 10 10 H 1.48494 * 109.47182 * 209.99756 * 8 6 4 11 11 H 1.48502 * 109.47299 * 330.00243 * 8 6 4 12 12 C 1.53010 * 109.46827 * 119.99829 * 2 1 3 13 13 S 1.81397 * 109.47098 * 299.99818 * 12 2 1 14 14 O 1.42102 * 110.54022 * 68.37817 * 13 12 2 15 15 O 1.42097 * 110.54509 * 291.62993 * 13 12 2 16 16 N 1.65596 * 104.44963 * 179.97438 * 13 12 2 17 17 C 1.46506 * 119.99829 * 64.99969 * 16 13 12 18 18 H 1.09004 * 109.52043 * 25.00616 * 17 16 13 19 19 C 1.53091 * 109.52537 * 264.87646 * 17 16 13 20 20 O 1.42903 * 109.41199 * 182.55175 * 19 17 16 21 21 C 1.42910 * 114.15461 * 61.06006 * 20 19 17 22 22 C 1.53092 * 109.41400 * 298.87484 * 21 20 19 23 23 C 1.53181 * 109.51843 * 145.12701 * 17 16 13 24 24 H 1.08991 * 109.54450 * 57.02417 * 23 17 16 25 25 O 1.42903 * 109.54402 * 296.74884 * 23 17 16 26 26 H 1.09000 * 109.47476 * 299.99997 * 1 2 3 27 27 H 1.09004 * 109.46942 * 60.00174 * 1 2 3 28 28 H 1.09007 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47127 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47332 * 300.00153 * 3 2 1 31 31 H 1.09000 * 109.46885 * 59.99641 * 3 2 1 32 32 H 0.97003 * 119.99765 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46653 * 180.02562 * 12 2 1 34 34 H 1.08999 * 109.46779 * 59.99957 * 12 2 1 35 35 H 0.97002 * 120.00329 * 245.00723 * 16 13 12 36 36 H 1.09001 * 109.47562 * 302.46924 * 19 17 16 37 37 H 1.08999 * 109.47916 * 62.49884 * 19 17 16 38 38 H 1.08994 * 109.48245 * 178.88890 * 21 20 19 39 39 H 1.08997 * 109.48063 * 58.85616 * 21 20 19 40 40 H 1.09003 * 109.52390 * 297.70524 * 22 21 20 41 41 H 1.08998 * 109.52531 * 177.51678 * 22 21 20 42 42 H 0.96700 * 113.99960 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1197 -4.0078 9 1 1.3448 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1119 11 1 3.6308 -1.7568 -3.7118 12 6 2.0399 -0.7213 1.2494 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0478 1.4101 2.8544 16 7 2.0528 -0.7407 3.9937 17 6 3.5012 -0.7981 4.2061 18 1 3.9684 0.0855 3.7712 19 6 4.0665 -2.0557 3.5407 20 8 5.4693 -2.1404 3.7997 21 6 5.8033 -2.2358 5.1859 22 6 5.3081 -0.9847 5.9160 23 6 3.7967 -0.8464 5.7083 24 1 3.2879 -1.7018 6.1527 25 8 3.3378 0.3583 6.3248 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7088 1.1612 -3.4844 33 1 3.1300 -0.7209 1.2496 34 1 1.6765 -1.7489 1.2493 35 1 1.4556 -1.2151 4.5930 36 1 3.5690 -2.9365 3.9466 37 1 3.8967 -2.0054 2.4652 38 1 6.8849 -2.3159 5.2945 39 1 5.3285 -3.1185 5.6143 40 1 5.8127 -0.1054 5.5154 41 1 5.5227 -1.0753 6.9808 42 1 3.4934 0.3962 7.2784 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601522236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:18 Heat of formation + Delta-G solvation = -199.482448 kcal Electronic energy + Delta-G solvation = -25401.919383 eV Core-core repulsion = 21701.041879 eV Total energy + Delta-G solvation = -3700.877504 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76388 -38.14807 -38.12150 -37.65689 -36.90988 -35.93079 -33.63636 -32.61744 -30.17023 -28.42547 -27.69590 -27.23813 -25.47428 -24.30421 -21.77223 -21.33364 -20.28241 -18.93739 -18.36815 -17.99540 -17.83713 -17.18233 -16.85748 -16.69560 -16.56063 -16.10188 -15.57667 -15.15431 -14.90020 -14.69303 -14.44160 -14.18233 -14.12573 -13.83956 -13.64204 -13.40865 -13.05452 -12.91287 -12.87937 -12.76010 -12.55839 -12.49155 -12.18286 -12.14446 -12.05829 -11.88681 -11.62756 -11.56322 -11.44400 -11.00009 -10.88987 -10.60001 -10.40631 -10.24331 -8.01878 -6.20408 -0.65037 1.45324 1.47242 1.55925 1.80167 2.45450 2.82364 2.88137 3.10522 3.20544 3.31017 3.60677 3.75695 3.84396 3.98751 3.99680 4.11549 4.20129 4.38292 4.54252 4.55985 4.56597 4.68984 4.79485 4.81091 4.86424 4.87444 4.97414 5.03123 5.08426 5.23773 5.38347 5.50391 5.65703 5.96745 6.05506 6.11756 6.19837 6.34331 6.84343 6.90904 7.47923 8.98205 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.004736 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.517881 B = 5910.238374 C = 6855.297011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.070 3.930 3 C -0.160 4.160 4 C -0.515 4.515 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.267 1.267 12 C -0.587 4.587 13 S 2.610 3.390 14 O -0.991 6.991 15 O -0.993 6.993 16 N -1.097 6.097 17 C 0.112 3.888 18 H 0.080 0.920 19 C 0.039 3.961 20 O -0.395 6.395 21 C 0.051 3.949 22 C -0.183 4.183 23 C 0.102 3.898 24 H 0.090 0.910 25 O -0.579 6.579 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.425 0.575 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.629 -8.954 19.002 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 C -0.218 4.218 4 C -0.554 4.554 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.720 4.720 13 S 2.708 3.292 14 O -0.981 6.981 15 O -0.982 6.982 16 N -0.857 5.857 17 C 0.004 3.996 18 H 0.098 0.902 19 C -0.040 4.040 20 O -0.313 6.313 21 C -0.026 4.026 22 C -0.221 4.221 23 C 0.041 3.959 24 H 0.108 0.892 25 O -0.387 6.387 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.262 0.738 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.095 -7.817 18.123 21.333 hybrid contribution 0.130 -0.701 -0.412 0.823 sum 8.225 -8.518 17.711 21.305 Atomic orbital electron populations 1.22207 0.97676 1.00632 1.01242 1.17916 0.92378 0.91997 0.90883 1.22213 0.99764 0.98588 1.01251 1.21283 1.31608 1.12296 0.90225 0.91626 1.25682 0.95190 0.95628 1.01707 1.69950 1.37263 1.23725 1.23815 0.85601 0.78895 0.78213 0.79171 1.20302 1.21417 1.19132 1.30588 1.12314 1.13744 1.15316 1.04841 0.73517 0.74960 0.75919 1.93505 1.31253 1.87018 1.86308 1.93510 1.78441 1.40335 1.85942 1.55197 1.13831 1.70533 1.46165 1.21695 0.79949 1.00275 0.97730 0.90175 1.23329 0.82081 0.96549 1.02006 1.87999 1.22558 1.94275 1.26419 1.22892 1.02609 0.96708 0.80345 1.22990 0.95007 1.00212 1.03931 1.22117 0.94492 0.88399 0.90873 0.89181 1.86642 1.84373 1.39992 1.27739 0.95147 0.91033 0.93812 0.94221 0.91006 0.95138 0.92969 0.84686 0.83683 0.73839 0.89213 0.88123 0.86716 0.90533 0.91467 0.86800 0.75358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.00 7.77 71.98 0.56 -7.44 16 2 C 0.07 3.42 0.52 -52.93 -0.03 3.39 16 3 C -0.16 -8.16 7.77 71.98 0.56 -7.60 16 4 C -0.52 -26.74 8.01 25.60 0.21 -26.54 16 5 H 0.07 3.24 7.74 -2.91 -0.02 3.22 16 6 C 0.02 0.92 5.15 84.66 0.44 1.35 16 7 N -0.91 -50.71 9.35 21.45 0.20 -50.50 16 8 Si 0.96 42.25 29.54 68.60 2.03 44.27 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 C -0.59 -22.16 4.23 71.99 0.30 -21.86 16 13 S 2.61 97.76 4.47 -56.49 -0.25 97.51 16 14 O -0.99 -41.92 15.70 -127.65 -2.00 -43.92 16 15 O -0.99 -44.17 15.02 -127.65 -1.92 -46.09 16 16 N -1.10 -28.89 5.29 -168.99 -0.89 -29.78 16 17 C 0.11 2.66 2.57 45.08 0.12 2.77 16 18 H 0.08 2.37 7.48 -2.38 -0.02 2.35 16 19 C 0.04 0.79 6.41 72.01 0.46 1.25 16 20 O -0.39 -8.27 10.76 -148.98 -1.60 -9.87 16 21 C 0.05 0.64 6.85 72.01 0.49 1.13 16 22 C -0.18 -2.30 5.77 30.69 0.18 -2.13 16 23 C 0.10 1.72 3.12 30.72 0.10 1.81 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 25 O -0.58 -11.75 13.25 -148.98 -1.97 -13.72 16 26 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 27 H 0.07 3.92 6.07 -2.38 -0.01 3.90 16 28 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 31 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 32 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.14 4.60 6.75 -2.39 -0.02 4.59 16 34 H 0.15 4.69 8.14 -2.39 -0.02 4.67 16 35 H 0.43 8.94 8.80 -96.74 -0.85 8.09 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 37 H 0.10 2.23 5.85 -2.39 -0.01 2.22 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.40 3.78 9.09 -74.06 -0.67 3.10 16 Total: -1.00 -74.60 333.23 -3.51 -78.11 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.47 Total: 27.86 kcal Atomic # 6 Polarization: -57.24 SS G_CDS: 3.38 Total: -53.86 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -0.69 Total: -80.29 kcal Atomic # 8 Polarization: -106.10 SS G_CDS: -7.50 Total: -113.60 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 97.76 SS G_CDS: -0.25 Total: 97.51 kcal Total: -74.60 -3.51 -78.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601522236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.374 kcal (2) G-P(sol) polarization free energy of solvation -74.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds