Wall clock time and date at job start Fri Apr 10 2020 14:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47367 * 2 1 4 4 C 1.53001 * 109.47430 * 120.00614 * 2 1 3 5 5 C 1.50706 * 109.46589 * 304.99580 * 4 2 1 6 6 C 1.38237 * 119.99744 * 90.00605 * 5 4 2 7 7 C 1.38235 * 119.99712 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.94731 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00223 * 270.01815 * 5 4 2 11 11 C 1.50706 * 109.47011 * 240.00394 * 2 1 3 12 12 O 1.20828 * 119.99582 * 264.99783 * 11 2 1 13 13 O 1.34224 * 120.00302 * 84.99510 * 11 2 1 14 14 C 1.45192 * 117.00326 * 179.97438 * 13 11 2 15 15 C 1.50701 * 109.47413 * 180.02562 * 14 13 11 16 16 O 1.21296 * 119.99762 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00180 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00038 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00100 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00182 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00213 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99967 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47104 * 90.00326 * 22 20 18 24 24 H 1.48496 * 109.47108 * 210.00503 * 22 20 18 25 25 H 1.48502 * 109.46951 * 330.00676 * 22 20 18 26 26 H 1.09007 * 109.46845 * 299.99425 * 1 2 3 27 27 H 1.08998 * 109.47618 * 59.99851 * 1 2 3 28 28 H 1.09006 * 109.47387 * 179.97438 * 1 2 3 29 29 H 0.96698 * 114.00716 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47218 * 185.00325 * 4 2 1 31 31 H 1.08993 * 109.47154 * 64.99759 * 4 2 1 32 32 H 1.08005 * 120.00088 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 36 36 H 1.07998 * 119.99975 * 0.02562 * 10 5 4 37 37 H 1.09004 * 109.47534 * 300.00405 * 14 13 11 38 38 H 1.08999 * 109.46879 * 60.00394 * 14 13 11 39 39 H 0.97003 * 120.00351 * 0.02562 * 17 15 14 40 40 H 0.96998 * 120.00231 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.4392 -0.0860 2.4765 6 6 0.2390 -0.5528 2.9793 7 6 -0.3124 0.0303 4.1048 8 6 0.3368 1.0794 4.7282 9 6 1.5345 1.5494 4.2227 10 6 2.0879 0.9637 3.0995 11 6 2.0323 -0.7104 -1.2306 12 8 2.3196 -1.8827 -1.1763 13 8 2.1604 -0.0408 -2.3868 14 6 2.6504 -0.7885 -3.5308 15 6 2.7284 0.1213 -4.7297 16 8 2.4025 1.2854 -4.6298 17 7 3.1593 -0.3587 -5.9130 18 6 3.2308 0.4691 -7.0035 19 1 2.9413 1.5059 -6.9144 20 6 3.6745 -0.0258 -8.2237 21 7 3.7425 0.7675 -9.2691 22 14 4.1744 -1.8191 -8.3781 23 1 2.9916 -2.6315 -8.7606 24 1 5.2243 -1.9523 -9.4197 25 1 4.7046 -2.2989 -7.0766 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9703 1.4237 0.0004 30 1 3.1263 -0.6444 1.2951 31 1 1.7517 -1.7716 1.2054 32 1 -0.2682 -1.3726 2.4922 33 1 -1.2502 -0.3342 4.4973 34 1 -0.0938 1.5347 5.6078 35 1 2.0395 2.3720 4.7072 36 1 3.0252 1.3288 2.7064 37 1 3.6422 -1.1830 -3.3094 38 1 1.9706 -1.6134 -3.7439 39 1 3.4189 -1.2899 -5.9932 40 1 4.0526 0.4221 -10.1208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745144936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:10 Heat of formation + Delta-G solvation = -140.817411 kcal Electronic energy + Delta-G solvation = -24563.143502 eV Core-core repulsion = 20729.365954 eV Total energy + Delta-G solvation = -3833.777548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.96942 -39.63042 -38.43477 -37.38584 -36.30652 -34.06777 -33.42072 -31.80807 -31.25288 -30.68304 -28.68819 -27.26501 -24.94967 -23.77135 -22.78005 -21.61751 -20.31297 -19.65473 -18.64076 -18.52937 -16.93957 -16.79542 -16.61194 -16.09388 -15.58926 -15.55172 -15.26986 -14.99103 -14.66971 -14.06464 -13.84473 -13.65769 -13.29838 -13.20061 -12.89563 -12.70763 -12.53319 -12.45304 -12.28412 -12.22817 -12.06356 -11.80542 -11.34556 -11.27613 -11.22160 -11.02682 -10.66195 -10.57575 -10.12000 -10.03848 -9.68204 -9.14685 -8.94105 -8.66602 -8.29836 -6.39601 -3.92540 1.05652 1.16145 2.02693 2.47320 2.97604 3.02382 3.11080 3.53016 3.54582 3.86855 4.02851 4.16296 4.43217 4.49126 4.58707 4.71895 4.75641 4.84915 4.89082 5.09749 5.13887 5.24860 5.29315 5.41399 5.44662 5.50874 5.52823 5.54814 5.66074 5.76701 5.79730 5.93171 6.20089 6.26523 6.34974 6.40865 6.74303 7.23006 7.44256 7.70982 8.00429 8.47383 8.83406 9.29343 9.65207 10.72693 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.039696 B = 0.002512 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.189817 B =11146.016445 C =11434.283966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.160 3.840 3 O -0.527 6.527 4 C -0.099 4.099 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.120 4.120 10 C -0.102 4.102 11 C 0.432 3.568 12 O -0.509 6.509 13 O -0.309 6.309 14 C 0.053 3.947 15 C 0.447 3.553 16 O -0.553 6.553 17 N -0.580 5.580 18 C -0.308 4.308 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.875 5.875 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.269 1.269 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.382 0.618 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.373 0.627 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 -5.432 26.034 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.117 3.883 3 O -0.333 6.333 4 C -0.137 4.137 5 C -0.074 4.074 6 C -0.132 4.132 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.138 4.138 10 C -0.120 4.120 11 C 0.274 3.726 12 O -0.397 6.397 13 O -0.223 6.223 14 C -0.025 4.025 15 C 0.232 3.768 16 O -0.435 6.435 17 N -0.220 5.220 18 C -0.436 4.436 19 H 0.140 0.860 20 C -0.159 4.159 21 N -0.514 5.514 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.194 1.194 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.206 0.794 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.146 -4.804 25.825 26.768 hybrid contribution 1.170 -1.766 -0.469 2.170 sum -3.975 -6.570 25.357 26.494 Atomic orbital electron populations 1.21908 0.89728 1.03384 1.05176 1.20982 0.97204 0.82798 0.87342 1.86687 1.27256 1.22966 1.96370 1.21190 1.01166 1.00797 0.90499 1.19551 0.95364 0.96631 0.95821 1.21092 0.95335 1.00256 0.96495 1.21124 0.99972 0.96819 0.96051 1.21157 0.95702 0.97177 1.00077 1.21146 0.96132 0.99875 0.96601 1.21035 1.00073 0.95418 0.95445 1.24843 0.75049 0.86623 0.86092 1.90657 1.46187 1.17231 1.85672 1.86656 1.75547 1.42461 1.17606 1.22813 1.00559 0.94533 0.84554 1.19170 0.85430 0.88760 0.83427 1.90624 1.51785 1.17262 1.83811 1.42040 1.59418 1.11613 1.08966 1.19428 1.42404 0.96211 0.85564 0.85993 1.25039 0.97339 0.98405 0.95144 1.69611 1.45387 1.35460 1.00937 0.86677 0.79478 0.84629 0.78695 1.19414 1.19939 1.19401 0.89517 0.90276 0.90467 0.76989 0.89895 0.88357 0.85957 0.86100 0.86258 0.86086 0.86045 0.89467 0.89429 0.79434 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.06 37.15 0.30 -1.25 16 2 C 0.16 1.84 1.04 -91.77 -0.10 1.74 16 3 O -0.53 -6.31 12.26 -49.12 -0.60 -6.91 16 4 C -0.10 -0.92 4.28 -27.88 -0.12 -1.04 16 5 C -0.07 -0.66 4.24 -104.62 -0.44 -1.11 16 6 C -0.11 -0.94 7.85 -39.58 -0.31 -1.26 16 7 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 8 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 9 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 10 C -0.10 -0.88 9.40 -39.58 -0.37 -1.25 16 11 C 0.43 6.35 6.80 36.01 0.24 6.59 16 12 O -0.51 -7.98 15.74 -18.75 -0.30 -8.27 16 13 O -0.31 -5.53 9.51 -48.33 -0.46 -5.99 16 14 C 0.05 0.95 5.94 36.01 0.21 1.16 16 15 C 0.45 10.39 7.86 -10.99 -0.09 10.31 16 16 O -0.55 -15.33 16.08 -14.12 -0.23 -15.56 16 17 N -0.58 -13.79 5.09 -10.96 -0.06 -13.84 16 18 C -0.31 -8.62 10.16 -14.93 -0.15 -8.78 16 19 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 20 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 21 N -0.87 -25.15 13.96 55.50 0.77 -24.37 16 22 Si 0.88 19.02 27.74 -169.99 -4.71 14.30 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 26 H 0.09 0.86 6.14 -51.92 -0.32 0.54 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.38 3.38 9.04 45.56 0.41 3.79 16 30 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.10 0.92 7.63 -51.93 -0.40 0.53 16 32 H 0.12 0.85 8.03 -52.48 -0.42 0.43 16 33 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.09 1.37 8.13 -51.93 -0.42 0.94 16 38 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 39 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 40 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -34.69 347.55 -6.77 -41.46 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.32 Total: 11.75 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.11 Total: 2.20 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.72 Total: -38.22 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.58 Total: -36.74 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.69 -6.77 -41.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745144936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.355 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds