Wall clock time and date at job start Fri Apr 10 2020 14:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47367 * 2 1 4 4 C 1.53001 * 109.47430 * 120.00614 * 2 1 3 5 5 C 1.50706 * 109.46589 * 304.99580 * 4 2 1 6 6 C 1.38237 * 119.99744 * 90.00605 * 5 4 2 7 7 C 1.38235 * 119.99712 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.94731 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00223 * 270.01815 * 5 4 2 11 11 C 1.50706 * 109.47011 * 240.00394 * 2 1 3 12 12 O 1.20828 * 119.99582 * 264.99783 * 11 2 1 13 13 O 1.34224 * 120.00302 * 84.99510 * 11 2 1 14 14 C 1.45192 * 117.00326 * 179.97438 * 13 11 2 15 15 C 1.50701 * 109.47413 * 180.02562 * 14 13 11 16 16 O 1.21296 * 119.99762 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00180 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00038 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00100 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00182 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00213 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99967 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47104 * 90.00326 * 22 20 18 24 24 H 1.48496 * 109.47108 * 210.00503 * 22 20 18 25 25 H 1.48502 * 109.46951 * 330.00676 * 22 20 18 26 26 H 1.09007 * 109.46845 * 299.99425 * 1 2 3 27 27 H 1.08998 * 109.47618 * 59.99851 * 1 2 3 28 28 H 1.09006 * 109.47387 * 179.97438 * 1 2 3 29 29 H 0.96698 * 114.00716 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47218 * 185.00325 * 4 2 1 31 31 H 1.08993 * 109.47154 * 64.99759 * 4 2 1 32 32 H 1.08005 * 120.00088 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 36 36 H 1.07998 * 119.99975 * 0.02562 * 10 5 4 37 37 H 1.09004 * 109.47534 * 300.00405 * 14 13 11 38 38 H 1.08999 * 109.46879 * 60.00394 * 14 13 11 39 39 H 0.97003 * 120.00351 * 0.02562 * 17 15 14 40 40 H 0.96998 * 120.00231 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.4392 -0.0860 2.4765 6 6 0.2390 -0.5528 2.9793 7 6 -0.3124 0.0303 4.1048 8 6 0.3368 1.0794 4.7282 9 6 1.5345 1.5494 4.2227 10 6 2.0879 0.9637 3.0995 11 6 2.0323 -0.7104 -1.2306 12 8 2.3196 -1.8827 -1.1763 13 8 2.1604 -0.0408 -2.3868 14 6 2.6504 -0.7885 -3.5308 15 6 2.7284 0.1213 -4.7297 16 8 2.4025 1.2854 -4.6298 17 7 3.1593 -0.3587 -5.9130 18 6 3.2308 0.4691 -7.0035 19 1 2.9413 1.5059 -6.9144 20 6 3.6745 -0.0258 -8.2237 21 7 3.7425 0.7675 -9.2691 22 14 4.1744 -1.8191 -8.3781 23 1 2.9916 -2.6315 -8.7606 24 1 5.2243 -1.9523 -9.4197 25 1 4.7046 -2.2989 -7.0766 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9703 1.4237 0.0004 30 1 3.1263 -0.6444 1.2951 31 1 1.7517 -1.7716 1.2054 32 1 -0.2682 -1.3726 2.4922 33 1 -1.2502 -0.3342 4.4973 34 1 -0.0938 1.5347 5.6078 35 1 2.0395 2.3720 4.7072 36 1 3.0252 1.3288 2.7064 37 1 3.6422 -1.1830 -3.3094 38 1 1.9706 -1.6134 -3.7439 39 1 3.4189 -1.2899 -5.9932 40 1 4.0526 0.4221 -10.1208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745144936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:09 Heat of formation + Delta-G solvation = -164.946399 kcal Electronic energy + Delta-G solvation = -24564.189814 eV Core-core repulsion = 20729.365954 eV Total energy + Delta-G solvation = -3834.823860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09394 -40.54856 -40.05767 -38.35285 -37.59219 -36.10535 -34.18982 -33.88453 -31.87148 -31.44650 -30.22586 -27.99092 -26.69591 -24.98231 -23.36302 -22.40124 -21.56793 -21.24709 -20.54377 -19.64100 -18.13599 -17.88518 -17.73665 -17.37078 -16.88578 -16.66626 -16.40175 -15.91128 -15.79915 -15.62235 -15.09867 -14.85772 -14.34366 -14.25035 -14.17562 -13.94766 -13.82796 -13.56195 -13.46513 -13.12582 -13.01642 -12.93366 -12.77569 -12.47499 -12.01410 -11.96399 -11.92170 -11.90308 -11.78685 -11.60499 -11.13860 -10.62060 -10.35841 -9.73016 -9.55595 -8.47276 -6.10774 0.43606 0.57846 0.88459 1.26095 1.30623 1.32599 1.44010 1.73834 2.19083 2.70094 2.93130 3.04772 3.06683 3.39511 3.68566 3.72415 3.87321 3.95735 4.06271 4.07811 4.10739 4.22853 4.36206 4.46109 4.65210 4.68659 4.69865 4.81756 4.86002 5.06803 5.15650 5.21748 5.23869 5.45933 5.63124 5.69770 5.74046 5.83601 6.17765 6.31729 6.47921 6.65576 6.75899 7.23780 7.76116 8.69375 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.039696 B = 0.002512 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.189817 B =11146.016445 C =11434.283966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.164 3.836 3 O -0.541 6.541 4 C -0.089 4.089 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.131 4.131 10 C -0.115 4.115 11 C 0.436 3.564 12 O -0.515 6.515 13 O -0.335 6.335 14 C 0.063 3.937 15 C 0.447 3.553 16 O -0.608 6.608 17 N -0.576 5.576 18 C -0.334 4.334 19 H 0.060 0.940 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.255 1.255 24 H -0.271 1.271 25 H -0.231 1.231 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.393 0.607 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.393 0.607 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -8.436 27.957 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.121 3.879 3 O -0.349 6.349 4 C -0.126 4.126 5 C -0.086 4.086 6 C -0.140 4.140 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.149 4.149 10 C -0.133 4.133 11 C 0.278 3.722 12 O -0.404 6.404 13 O -0.250 6.250 14 C -0.014 4.014 15 C 0.234 3.766 16 O -0.492 6.492 17 N -0.218 5.218 18 C -0.463 4.463 19 H 0.078 0.922 20 C -0.209 4.209 21 N -0.565 5.565 22 Si 0.782 3.218 23 H -0.179 1.179 24 H -0.196 1.196 25 H -0.154 1.154 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.243 0.757 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.229 0.771 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.885 -7.826 27.777 29.269 hybrid contribution 1.040 -0.691 -1.001 1.601 sum -3.845 -8.517 26.776 28.360 Atomic orbital electron populations 1.21953 0.89236 1.04374 1.04609 1.21144 0.97551 0.82564 0.86623 1.86667 1.28530 1.23423 1.96269 1.21112 1.01633 1.00465 0.89413 1.19579 0.95946 0.97151 0.95918 1.21313 0.95216 1.00652 0.96832 1.21420 1.00698 0.96724 0.95862 1.21473 0.95565 0.97110 1.00605 1.21413 0.96542 1.00358 0.96613 1.21244 1.00603 0.95596 0.95872 1.25480 0.74391 0.86647 0.85654 1.90645 1.46585 1.17574 1.85628 1.86666 1.76144 1.43642 1.18503 1.22662 1.03154 0.93094 0.82535 1.20191 0.83020 0.88769 0.84588 1.90599 1.53541 1.20134 1.84938 1.41813 1.59717 1.12048 1.08191 1.18997 1.44554 0.94677 0.88037 0.92235 1.26114 0.96198 1.04836 0.93714 1.69781 1.46075 1.38706 1.01901 0.85401 0.79515 0.76428 0.80466 1.17911 1.19615 1.15427 0.88698 0.92147 0.88760 0.75668 0.89126 0.88159 0.84796 0.84252 0.84453 0.84715 0.85353 0.86421 0.86576 0.77077 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.06 71.98 0.58 -2.34 16 2 C 0.16 3.56 1.04 -11.54 -0.01 3.54 16 3 O -0.54 -12.58 12.26 -135.70 -1.66 -14.25 16 4 C -0.09 -1.50 4.28 29.85 0.13 -1.37 16 5 C -0.09 -1.41 4.24 -19.86 -0.08 -1.49 16 6 C -0.12 -1.80 7.85 22.27 0.17 -1.62 16 7 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 8 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 9 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 10 C -0.12 -1.85 9.40 22.27 0.21 -1.64 16 11 C 0.44 12.03 6.80 71.24 0.48 12.52 16 12 O -0.52 -14.81 15.74 21.96 0.35 -14.47 16 13 O -0.33 -11.63 9.51 -42.67 -0.41 -12.03 16 14 C 0.06 2.10 5.94 71.24 0.42 2.53 16 15 C 0.45 20.83 7.86 87.66 0.69 21.52 16 16 O -0.61 -35.03 16.08 15.72 0.25 -34.78 16 17 N -0.58 -27.14 5.09 -306.98 -1.56 -28.71 16 18 C -0.33 -19.40 10.16 84.04 0.85 -18.55 16 19 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 20 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 21 N -0.93 -54.77 13.96 21.66 0.30 -54.47 16 22 Si 0.96 37.79 27.74 68.60 1.90 39.70 16 23 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 26 H 0.09 1.75 6.14 -2.38 -0.01 1.74 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.39 6.70 9.04 -74.06 -0.67 6.03 16 30 H 0.09 1.36 8.09 -2.39 -0.02 1.34 16 31 H 0.10 1.66 7.63 -2.39 -0.02 1.64 16 32 H 0.13 1.56 8.03 -2.91 -0.02 1.54 16 33 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 35 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.12 3.28 8.13 -2.38 -0.02 3.26 16 38 H 0.12 3.28 8.13 -2.39 -0.02 3.26 16 39 H 0.39 15.12 5.76 -92.71 -0.53 14.58 16 40 H 0.28 15.20 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -79.28 347.55 3.58 -75.71 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.18 Total: 34.90 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 4.59 Total: 8.40 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.26 Total: -83.17 kcal Atomic # 8 Polarization: -74.05 SS G_CDS: -1.47 Total: -75.52 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.70 kcal Total: -79.28 3.58 -75.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745144936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.241 kcal (2) G-P(sol) polarization free energy of solvation -79.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds