Wall clock time and date at job start Fri Apr 10 2020 14:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46968 * 2 1 4 4 H 1.08993 * 109.47286 * 304.99319 * 3 2 1 5 5 O 1.45206 * 109.47527 * 64.99789 * 3 2 1 6 6 C 1.34228 * 117.00052 * 210.00278 * 5 3 2 7 7 O 1.20825 * 119.99887 * 359.97438 * 6 5 3 8 8 C 1.50698 * 119.99931 * 179.97438 * 6 5 3 9 9 C 1.50701 * 109.47050 * 179.97438 * 8 6 5 10 10 C 1.38329 * 119.96466 * 269.72261 * 9 8 6 11 11 C 1.38285 * 120.13177 * 179.76816 * 10 9 8 12 12 C 1.38115 * 120.07086 * 0.51114 * 11 10 9 13 13 C 1.38858 * 119.93072 * 359.74561 * 12 11 10 14 14 O 1.35754 * 120.06651 * 179.97438 * 13 12 11 15 15 C 1.34833 * 117.00236 * 354.49206 * 14 13 12 16 16 H 1.07994 * 119.99620 * 5.05401 * 15 14 13 17 17 C 1.38654 * 120.00035 * 185.06202 * 15 14 13 18 18 N 1.31557 * 120.00044 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00122 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46958 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47322 * 119.99499 * 19 17 15 22 22 H 1.48502 * 109.47268 * 240.00055 * 19 17 15 23 23 C 1.38076 * 119.96471 * 90.00305 * 9 8 6 24 24 C 1.50702 * 109.47034 * 184.99542 * 3 2 1 25 25 N 1.34777 * 120.00098 * 64.99947 * 24 3 2 26 26 O 1.21286 * 119.99852 * 245.00193 * 24 3 2 27 27 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46637 * 60.00205 * 1 2 3 29 29 H 1.08995 * 109.47176 * 300.00464 * 1 2 3 30 30 H 1.09003 * 109.46637 * 119.99795 * 2 1 3 31 31 H 1.08995 * 109.47176 * 239.99536 * 2 1 3 32 32 H 1.08993 * 109.47345 * 299.99847 * 8 6 5 33 33 H 1.09006 * 109.46836 * 59.99663 * 8 6 5 34 34 H 1.07994 * 119.93199 * 0.02562 * 10 9 8 35 35 H 1.07998 * 119.95724 * 180.26009 * 11 10 9 36 36 H 1.08001 * 120.03751 * 179.72828 * 12 11 10 37 37 H 0.97000 * 119.99980 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.03248 * 359.95291 * 23 9 8 39 39 H 0.96998 * 119.99561 * 0.02562 * 25 24 3 40 40 H 0.96993 * 120.00255 * 180.02562 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8418 5 8 1.6558 2.0918 1.2407 6 6 1.4467 3.4169 1.1957 7 8 1.5806 4.0146 0.1542 8 6 1.0448 4.1591 2.4441 9 6 0.8746 5.6222 2.1258 10 6 1.9497 6.4846 2.2438 11 6 1.7985 7.8270 1.9480 12 6 0.5704 8.3126 1.5438 13 6 -0.5121 7.4503 1.4296 14 8 -1.7206 7.9247 1.0331 15 6 -1.8328 9.2592 0.8758 16 1 -0.9634 9.8906 0.9840 17 6 -3.0645 9.8207 0.5752 18 7 -4.1235 9.0514 0.4431 19 14 -3.2201 11.6694 0.3579 20 1 -1.8927 12.3047 0.5574 21 1 -3.7111 11.9673 -1.0115 22 1 -4.1800 12.2061 1.3558 23 6 -0.3558 6.1016 1.7223 24 6 3.5419 1.4443 -0.1237 25 7 4.1261 0.9827 -1.2472 26 8 4.2250 1.8611 0.7877 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 0.1039 3.7566 2.8191 33 1 1.8188 4.0402 3.2025 34 1 2.9100 6.1080 2.5635 35 1 2.6409 8.4970 2.0370 36 1 0.4518 9.3618 1.3172 37 1 -4.9850 9.4442 0.2325 38 1 -1.1957 5.4284 1.6341 39 1 3.5798 0.6497 -1.9762 40 1 5.0928 0.9835 -1.3267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760636936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:37 Heat of formation + Delta-G solvation = -161.582858 kcal Electronic energy + Delta-G solvation = -24602.318671 eV Core-core repulsion = 20767.640665 eV Total energy + Delta-G solvation = -3834.678006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04373 -40.85451 -40.22191 -38.46638 -37.55789 -35.43024 -34.36748 -34.10731 -33.55843 -30.96866 -29.35513 -28.22424 -27.25879 -23.76452 -23.34757 -23.22354 -22.06356 -21.37021 -19.52376 -19.18856 -18.89799 -18.71550 -18.03272 -17.10575 -16.91211 -16.70513 -16.22901 -16.10539 -15.94698 -15.50239 -15.36874 -15.08169 -15.00797 -14.49304 -14.36845 -14.07622 -13.63853 -13.42022 -13.07962 -13.04329 -12.99077 -12.59808 -12.54235 -12.46267 -12.29365 -12.27122 -12.09019 -11.92230 -11.60509 -11.22589 -10.92204 -10.81682 -10.80935 -9.72918 -9.02648 -8.47374 -6.15886 0.39137 0.70468 1.11610 1.34941 1.37685 1.42399 1.53393 1.55961 2.17429 2.40499 2.82201 3.14283 3.37079 3.59279 3.63596 3.74378 3.87224 3.93058 4.05962 4.27100 4.33879 4.35202 4.43415 4.51814 4.56224 4.70005 4.73332 4.97055 5.01555 5.07363 5.11911 5.23534 5.29305 5.38923 5.59509 5.67918 5.70097 5.75346 6.01763 6.17060 6.23771 6.67030 6.97253 7.15312 7.77246 8.76138 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002916 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.055463 B = 9601.081903 C =10197.255927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C 0.060 3.940 4 H 0.110 0.890 5 O -0.329 6.329 6 C 0.467 3.533 7 O -0.531 6.531 8 C -0.063 4.063 9 C -0.036 4.036 10 C -0.180 4.180 11 C -0.072 4.072 12 C -0.240 4.240 13 C 0.114 3.886 14 O -0.231 6.231 15 C -0.414 4.414 16 H 0.101 0.899 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.267 1.267 23 C -0.185 4.185 24 C 0.502 3.498 25 N -0.825 5.825 26 O -0.579 6.579 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.273 0.727 38 H 0.114 0.886 39 H 0.421 0.579 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.500 -18.849 -1.323 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C 0.002 3.998 4 H 0.128 0.872 5 O -0.245 6.245 6 C 0.311 3.689 7 O -0.420 6.420 8 C -0.100 4.100 9 C -0.037 4.037 10 C -0.199 4.199 11 C -0.090 4.090 12 C -0.259 4.259 13 C 0.064 3.936 14 O -0.138 6.138 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.839 3.161 20 H -0.176 1.176 21 H -0.193 1.193 22 H -0.192 1.192 23 C -0.204 4.204 24 C 0.286 3.714 25 N -0.391 5.391 26 O -0.458 6.458 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.253 0.747 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 13.391 -18.508 -1.082 22.870 hybrid contribution -0.216 0.928 -0.821 1.258 sum 13.174 -17.580 -1.903 22.051 Atomic orbital electron populations 1.21807 0.93925 1.03524 1.02172 1.21711 0.97743 0.89160 1.05657 1.22995 0.91383 0.97841 0.87630 0.87236 1.86609 1.78377 1.22395 1.37102 1.24100 0.72430 0.80918 0.91426 1.90690 1.48642 1.68744 1.33874 1.20382 1.07276 0.88977 0.93359 1.19072 0.92239 0.94333 0.98011 1.20969 0.98704 0.93408 1.06796 1.21112 0.95977 0.96057 0.95861 1.21328 0.94089 1.00392 1.10134 1.19816 0.86315 0.94145 0.93297 1.83938 1.28231 1.25513 1.76131 1.21864 0.97006 0.79891 1.50281 0.88195 1.26587 0.93384 1.06020 0.95984 1.70189 1.00504 1.38053 1.47086 0.84521 0.79477 0.73589 0.78549 1.17573 1.19338 1.19156 1.20206 0.98750 0.92735 1.08748 1.21091 0.91090 0.76453 0.82814 1.43567 1.12413 1.65352 1.17790 1.90755 1.66046 1.47990 1.41046 0.89753 0.92450 0.93275 0.89810 0.86015 0.84357 0.83638 0.84110 0.83624 0.86138 0.91810 0.86798 0.74733 0.75436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.81 71.98 0.71 -1.26 16 2 C -0.11 -1.22 5.62 30.59 0.17 -1.05 16 3 C 0.06 1.21 2.35 29.85 0.07 1.28 16 4 H 0.11 2.29 7.16 -2.39 -0.02 2.28 16 5 O -0.33 -8.53 8.96 -45.06 -0.40 -8.93 16 6 C 0.47 14.38 7.92 71.24 0.56 14.94 16 7 O -0.53 -20.29 15.25 21.97 0.34 -19.96 16 8 C -0.06 -1.70 5.94 29.10 0.17 -1.52 16 9 C -0.04 -1.31 4.37 -19.88 -0.09 -1.40 16 10 C -0.18 -6.26 9.70 22.30 0.22 -6.04 16 11 C -0.07 -2.69 10.04 22.25 0.22 -2.46 16 12 C -0.24 -11.06 9.17 22.39 0.21 -10.85 16 13 C 0.11 5.97 6.65 22.58 0.15 6.12 16 14 O -0.23 -14.34 9.76 -22.81 -0.22 -14.56 16 15 C -0.41 -24.73 9.49 67.92 0.64 -24.09 16 16 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 17 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 18 N -0.92 -57.15 13.67 21.61 0.30 -56.85 16 19 Si 1.02 43.60 29.55 68.60 2.03 45.62 16 20 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 C -0.19 -8.29 9.65 22.39 0.22 -8.08 16 24 C 0.50 10.99 7.42 87.66 0.65 11.64 16 25 N -0.82 -9.29 8.77 -173.53 -1.52 -10.81 16 26 O -0.58 -18.46 17.35 15.70 0.27 -18.19 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.79 7.82 -2.39 -0.02 0.77 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 0.54 7.77 -2.39 -0.02 0.52 16 32 H 0.14 3.02 8.08 -2.39 -0.02 3.01 16 33 H 0.15 3.01 8.08 -2.38 -0.02 2.99 16 34 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 36 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 39 H 0.42 1.65 8.53 -92.71 -0.79 0.86 16 40 H 0.41 3.82 8.93 -92.71 -0.83 3.00 16 Total: -1.00 -86.94 352.38 4.63 -82.31 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.52 Total: 24.97 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 4.37 Total: -23.59 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.23 Total: -67.67 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -0.02 Total: -61.64 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -86.94 4.63 -82.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760636936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.274 kcal (2) G-P(sol) polarization free energy of solvation -86.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds