Wall clock time and date at job start Fri Apr 10 2020 14:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47293 * 2 1 4 4 H 1.09004 * 109.46739 * 55.00132 * 3 2 1 5 5 O 1.45193 * 109.47708 * 295.00486 * 3 2 1 6 6 C 1.34230 * 117.00621 * 149.99910 * 5 3 2 7 7 O 1.20825 * 119.99618 * 359.97438 * 6 5 3 8 8 C 1.50697 * 120.00146 * 180.02562 * 6 5 3 9 9 C 1.50699 * 109.46970 * 179.97438 * 8 6 5 10 10 C 1.38328 * 119.96224 * 270.02075 * 9 8 6 11 11 C 1.38279 * 120.13490 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.07187 * 359.77180 * 11 10 9 13 13 C 1.38861 * 119.92847 * 0.50048 * 12 11 10 14 14 O 1.35751 * 120.06597 * 179.74703 * 13 12 11 15 15 C 1.34829 * 117.00376 * 354.17384 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38657 * 120.00083 * 185.03464 * 15 14 13 18 18 N 1.31555 * 119.99797 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99748 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47410 * 90.00109 * 19 17 15 21 21 H 1.48504 * 109.46801 * 209.99865 * 19 17 15 22 22 H 1.48497 * 109.47495 * 329.99577 * 19 17 15 23 23 C 1.38073 * 119.96952 * 89.99515 * 9 8 6 24 24 C 1.50701 * 109.47184 * 175.00070 * 3 2 1 25 25 N 1.34778 * 119.99845 * 300.00426 * 24 3 2 26 26 O 1.21282 * 120.00094 * 120.00569 * 24 3 2 27 27 H 1.08995 * 109.47240 * 299.99952 * 1 2 3 28 28 H 1.09003 * 109.47472 * 59.99929 * 1 2 3 29 29 H 1.09004 * 109.47647 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47011 * 240.00373 * 2 1 3 31 31 H 1.08999 * 109.47350 * 120.01000 * 2 1 3 32 32 H 1.08996 * 109.47386 * 59.99563 * 8 6 5 33 33 H 1.08997 * 109.47038 * 299.99398 * 8 6 5 34 34 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 35 35 H 1.07999 * 119.96467 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.03711 * 180.27572 * 12 11 10 37 37 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.03594 * 0.04940 * 23 9 8 39 39 H 0.96999 * 120.00495 * 359.97438 * 25 24 3 40 40 H 0.97000 * 119.99678 * 180.02562 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9814 0.8419 5 8 1.6558 2.0917 -1.2405 6 6 1.4468 3.4169 -1.1956 7 8 1.5799 4.0144 -0.1539 8 6 1.0449 4.1591 -2.4440 9 6 0.8736 5.6221 -2.1255 10 6 -0.3594 6.1013 -1.7211 11 6 -0.5205 7.4429 -1.4274 12 6 0.5511 8.3079 -1.5325 13 6 1.7888 7.8309 -1.9435 14 8 2.8426 8.6796 -2.0527 15 6 2.5943 9.9914 -1.8648 16 1 1.6108 10.3164 -1.5591 17 6 3.6015 10.9232 -2.0640 18 7 3.3590 12.2032 -1.8812 19 14 5.3025 10.3611 -2.5934 20 1 5.3755 10.3335 -4.0763 21 1 6.3217 11.3031 -2.0651 22 1 5.5625 9.0000 -2.0595 23 6 1.9476 6.4826 -2.2369 24 6 3.5419 1.4442 0.1238 25 7 4.1297 0.8909 1.2031 26 8 4.2216 1.9435 -0.7477 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 0.1040 3.7567 -2.8190 33 1 1.8188 4.0403 -3.2023 34 1 -1.1980 5.4262 -1.6347 35 1 -1.4843 7.8140 -1.1116 36 1 0.4258 9.3548 -1.2986 37 1 4.0637 12.8551 -2.0202 38 1 2.9099 6.1080 -2.5530 39 1 3.5861 0.4919 1.9004 40 1 5.0964 0.8924 1.2829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760636942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:39 Heat of formation + Delta-G solvation = -159.155954 kcal Electronic energy + Delta-G solvation = -24704.432172 eV Core-core repulsion = 20869.859405 eV Total energy + Delta-G solvation = -3834.572767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.04025 -40.96092 -40.25955 -38.57402 -37.56971 -35.47698 -34.51485 -34.08799 -33.59739 -31.16365 -29.36887 -28.20363 -27.20521 -23.81886 -23.33351 -23.18923 -21.96113 -21.35949 -19.69649 -19.18804 -18.94568 -18.80507 -18.03435 -17.08217 -16.97794 -16.82260 -16.39205 -15.98454 -15.81533 -15.67043 -15.31597 -15.24114 -14.86802 -14.48035 -14.44838 -14.20586 -14.01511 -13.41222 -13.10281 -13.08013 -13.02031 -12.60371 -12.58845 -12.50342 -12.40970 -12.26607 -11.97357 -11.89142 -11.58948 -11.34647 -10.93828 -10.93358 -10.82823 -9.76427 -9.11712 -8.53160 -6.25505 0.35608 0.65210 1.12865 1.26925 1.30718 1.36722 1.48171 1.58545 2.25128 2.39957 2.74516 2.99586 3.10121 3.58436 3.60010 3.72592 3.89177 3.92571 4.02822 4.22784 4.36038 4.37703 4.46022 4.49658 4.57548 4.66216 4.76406 4.90564 5.05280 5.09063 5.18037 5.30450 5.35705 5.42502 5.59224 5.66793 5.73126 5.73577 5.88303 6.20230 6.23862 6.68673 6.81483 7.15285 7.56598 8.58652 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.003360 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.288890 B = 8332.241936 C = 9465.811778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C 0.063 3.937 4 H 0.115 0.885 5 O -0.329 6.329 6 C 0.467 3.533 7 O -0.531 6.531 8 C -0.062 4.062 9 C -0.039 4.039 10 C -0.162 4.162 11 C -0.074 4.074 12 C -0.233 4.233 13 C 0.119 3.881 14 O -0.249 6.249 15 C -0.400 4.400 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.264 1.264 22 H -0.272 1.272 23 C -0.183 4.183 24 C 0.496 3.504 25 N -0.825 5.825 26 O -0.585 6.585 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.161 0.839 33 H 0.127 0.873 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.285 0.715 38 H 0.114 0.886 39 H 0.421 0.579 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 -30.037 4.775 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C 0.005 3.995 4 H 0.133 0.867 5 O -0.245 6.245 6 C 0.311 3.689 7 O -0.420 6.420 8 C -0.099 4.099 9 C -0.040 4.040 10 C -0.181 4.181 11 C -0.092 4.092 12 C -0.253 4.253 13 C 0.070 3.930 14 O -0.157 6.157 15 C -0.476 4.476 16 H 0.101 0.899 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.789 3.211 20 H -0.187 1.187 21 H -0.188 1.188 22 H -0.197 1.197 23 C -0.202 4.202 24 C 0.280 3.720 25 N -0.392 5.392 26 O -0.465 6.465 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.179 0.821 33 H 0.145 0.855 34 H 0.175 0.825 35 H 0.165 0.835 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.254 0.746 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.632 -29.361 4.420 30.424 hybrid contribution 1.135 0.815 0.510 1.487 sum -5.497 -28.546 4.930 29.486 Atomic orbital electron populations 1.21793 0.93331 1.03580 1.02471 1.21734 0.98292 0.88879 1.05506 1.22993 0.90747 0.98021 0.87789 0.86726 1.86601 1.78318 1.22456 1.37106 1.24122 0.72468 0.80878 0.91442 1.90696 1.48621 1.68616 1.34043 1.20390 1.07776 0.88725 0.92995 1.19126 0.92946 0.93527 0.98353 1.21058 0.97363 0.95543 1.04101 1.21159 0.97898 0.93400 0.96765 1.21373 0.93965 1.01111 1.08818 1.19552 0.87492 0.90751 0.95224 1.83521 1.32632 1.17607 1.81947 1.20738 1.00384 0.78855 1.47626 0.89877 1.25217 1.03025 0.94031 0.96293 1.69718 1.36111 1.01061 1.49345 0.85284 0.77974 0.78452 0.79397 1.18660 1.18802 1.19676 1.20271 1.00108 0.90516 1.09278 1.21306 0.91571 0.76978 0.82137 1.43588 1.12392 1.60725 1.22485 1.90786 1.66519 1.46809 1.42359 0.92056 0.92824 0.89896 0.90054 0.86190 0.82115 0.85470 0.82533 0.83485 0.87127 0.90499 0.86802 0.74612 0.75639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 71.98 0.71 -0.52 16 2 C -0.11 -0.95 5.59 30.59 0.17 -0.78 16 3 C 0.06 1.16 2.36 29.85 0.07 1.23 16 4 H 0.12 2.09 7.16 -2.38 -0.02 2.07 16 5 O -0.33 -7.80 8.97 -45.07 -0.40 -8.20 16 6 C 0.47 13.22 7.87 71.24 0.56 13.79 16 7 O -0.53 -19.12 15.25 21.97 0.34 -18.79 16 8 C -0.06 -1.48 5.94 29.10 0.17 -1.31 16 9 C -0.04 -1.31 4.37 -19.88 -0.09 -1.39 16 10 C -0.16 -4.97 9.70 22.30 0.22 -4.75 16 11 C -0.07 -2.63 10.04 22.25 0.22 -2.41 16 12 C -0.23 -10.80 9.17 22.39 0.21 -10.60 16 13 C 0.12 6.00 6.65 22.58 0.15 6.15 16 14 O -0.25 -14.55 8.59 -22.74 -0.20 -14.75 16 15 C -0.40 -24.71 9.95 67.92 0.68 -24.03 16 16 H 0.08 5.32 5.44 -2.91 -0.02 5.30 16 17 C 0.01 0.77 5.49 84.83 0.47 1.24 16 18 N -0.92 -56.68 13.96 21.61 0.30 -56.38 16 19 Si 0.97 47.98 28.62 68.60 1.96 49.94 16 20 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.27 -13.90 7.11 99.48 0.71 -13.20 16 23 C -0.18 -7.84 9.65 22.39 0.22 -7.62 16 24 C 0.50 11.21 7.47 87.66 0.66 11.86 16 25 N -0.83 -9.74 8.73 -173.53 -1.52 -11.25 16 26 O -0.59 -20.18 17.30 15.76 0.27 -19.90 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.57 7.82 -2.39 -0.02 0.55 16 29 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.12 0.26 7.43 -2.39 -0.02 0.24 16 32 H 0.16 2.30 8.08 -2.39 -0.02 2.28 16 33 H 0.13 2.79 8.08 -2.39 -0.02 2.77 16 34 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 35 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.11 5.54 5.64 -2.91 -0.02 5.53 16 37 H 0.29 16.06 8.31 -92.71 -0.77 15.29 16 38 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.42 1.44 8.19 -92.71 -0.76 0.68 16 40 H 0.41 4.40 8.93 -92.71 -0.83 3.57 16 Total: -1.00 -87.30 350.49 4.67 -82.63 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -0.49 Total: 15.84 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.40 Total: -19.14 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -1.21 Total: -67.64 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: 0.01 Total: -61.64 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.96 Total: 49.94 kcal Total: -87.30 4.67 -82.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760636942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.523 kcal (2) G-P(sol) polarization free energy of solvation -87.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds