Wall clock time and date at job start Fri Apr 10 2020 14:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 O 1.20830 * 119.99594 * 120.00100 * 4 2 1 6 6 O 1.34222 * 120.00024 * 299.72383 * 4 2 1 7 7 C 1.45201 * 116.99867 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.47187 * 180.02562 * 7 6 4 9 9 O 1.21290 * 120.00256 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00187 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99746 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00065 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00128 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99724 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47285 * 60.00152 * 15 13 11 17 17 H 1.48504 * 109.46935 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47006 * 299.99730 * 15 13 11 19 19 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 20 20 C 1.38262 * 119.94309 * 359.73145 * 19 2 1 21 21 C 1.38149 * 120.05406 * 179.72308 * 20 19 2 22 22 C 1.38736 * 119.94346 * 0.56862 * 21 20 19 23 23 O 1.35898 * 120.05512 * 179.67684 * 22 21 20 24 24 C 1.38732 * 119.88482 * 359.70580 * 22 21 20 25 25 C 1.38139 * 119.94543 * 359.97438 * 24 22 21 26 26 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 27 27 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 28 28 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 31 31 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 32 32 H 1.09009 * 109.46864 * 300.00062 * 7 6 4 33 33 H 1.09001 * 109.47271 * 60.00074 * 7 6 4 34 34 H 0.96997 * 120.00313 * 0.02562 * 10 8 7 35 35 H 0.96999 * 120.00163 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.97584 * 359.97210 * 20 19 2 37 37 H 1.08003 * 120.03130 * 180.24700 * 21 20 19 38 38 H 0.96697 * 114.00344 * 270.02390 * 23 22 21 39 39 H 1.08001 * 120.02355 * 179.97438 * 24 22 21 40 40 H 1.08002 * 119.96794 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7269 -1.6928 1.1198 6 8 1.7125 -0.2484 2.4496 7 6 2.2318 -0.9825 3.5897 8 6 1.7722 -0.3221 4.8639 9 8 1.0759 0.6699 4.8160 10 7 2.1348 -0.8338 6.0569 11 6 1.7171 -0.2327 7.2162 12 1 1.0971 0.6507 7.1734 13 6 2.0915 -0.7599 8.4461 14 7 2.8462 -1.8344 8.4981 15 14 1.5217 0.0587 10.0256 16 1 0.0376 0.0626 10.0737 17 1 2.0523 -0.6924 11.1916 18 1 2.0221 1.4563 10.0671 19 6 2.0323 -0.7105 -1.2304 20 6 1.1328 -1.2405 -2.1368 21 6 1.5908 -1.8873 -3.2684 22 6 2.9545 -2.0151 -3.4888 23 8 3.4075 -2.6567 -4.5979 24 6 3.8550 -1.4874 -2.5748 25 6 3.3919 -0.8358 -1.4482 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.8641 -2.0082 3.5595 33 1 3.3212 -0.9857 3.5543 34 1 2.6919 -1.6268 6.0954 35 1 3.1072 -2.2027 9.3567 36 1 0.0713 -1.1452 -1.9622 37 1 0.8878 -2.2976 -3.9783 38 1 3.5381 -3.6071 -4.4767 39 1 4.9171 -1.5860 -2.7440 40 1 4.0926 -0.4252 -0.7362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773735183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:13 Heat of formation + Delta-G solvation = -142.751995 kcal Electronic energy + Delta-G solvation = -24604.358733 eV Core-core repulsion = 20770.497295 eV Total energy + Delta-G solvation = -3833.861438 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00511 -39.71735 -38.26833 -37.45424 -36.00344 -34.90981 -34.00692 -31.39287 -31.35328 -29.15884 -28.30219 -27.61306 -24.90678 -24.05367 -22.75394 -22.33313 -19.81819 -19.58760 -18.67075 -18.08648 -17.24050 -16.89587 -16.36880 -15.93739 -15.78447 -15.52054 -15.02237 -14.59286 -14.52533 -14.14236 -14.01159 -13.70186 -13.31502 -13.10999 -12.77320 -12.58858 -12.36201 -12.25216 -12.18831 -12.04034 -11.84429 -11.62998 -11.36150 -11.17050 -11.12147 -10.61596 -10.50122 -10.40488 -10.32213 -10.16863 -9.60674 -9.15662 -8.73397 -8.52839 -8.09542 -6.51041 -3.93230 0.95324 1.17815 2.30077 2.67751 3.14471 3.21875 3.26284 3.45411 3.72691 3.98277 4.10280 4.24490 4.48369 4.65840 4.74693 4.78847 4.86211 5.06001 5.13866 5.16056 5.33273 5.45140 5.47785 5.54752 5.58554 5.64167 5.67526 5.68885 5.79806 5.94751 6.01951 6.04356 6.15896 6.21159 6.37715 6.55306 6.64581 7.39028 7.46391 7.84078 7.95531 8.47337 9.05785 9.38128 9.88011 10.66134 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.033960 B = 0.002551 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.308308 B =10973.832141 C =11402.383265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.009 4.009 3 C -0.141 4.141 4 C 0.465 3.535 5 O -0.506 6.506 6 O -0.320 6.320 7 C 0.059 3.941 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.303 4.303 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.898 5.898 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.077 4.077 20 C -0.094 4.094 21 C -0.148 4.148 22 C 0.104 3.896 23 O -0.502 6.502 24 C -0.145 4.145 25 C -0.069 4.069 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.390 0.610 39 H 0.128 0.872 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 -0.998 -21.505 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 C -0.198 4.198 4 C 0.307 3.693 5 O -0.394 6.394 6 O -0.234 6.234 7 C -0.018 4.018 8 C 0.223 3.777 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.077 4.077 20 C -0.112 4.112 21 C -0.166 4.166 22 C 0.059 3.941 23 O -0.312 6.312 24 C -0.164 4.164 25 C -0.087 4.087 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.246 0.754 39 H 0.146 0.854 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.516 -0.176 -21.599 21.606 hybrid contribution 0.382 -0.971 1.105 1.520 sum -0.133 -1.146 -20.495 20.527 Atomic orbital electron populations 1.21993 0.91010 1.03196 1.04210 1.19319 0.98134 0.96196 0.87402 1.21923 1.01650 0.92109 1.04120 1.23495 0.77706 0.82882 0.85189 1.90660 1.35568 1.25757 1.87392 1.86538 1.68827 1.54272 1.13794 1.22758 0.99534 0.95641 0.83872 1.19306 0.86804 0.87658 0.83887 1.90557 1.41489 1.27320 1.86608 1.41704 1.45906 1.27452 1.03936 1.19676 1.30089 1.11271 0.82156 0.87660 1.25315 0.96539 0.96226 0.99670 1.69606 1.35588 1.21324 1.27293 0.85856 0.79106 0.79026 0.79892 1.19747 1.20869 1.19738 1.19377 0.93687 0.99621 0.95013 1.21040 1.00038 0.96751 0.93366 1.21355 0.94916 1.02153 0.98223 1.18499 0.91368 0.97316 0.86884 1.84802 1.87652 1.25558 1.33214 1.21365 1.00049 1.00897 0.94060 1.20844 0.94932 0.96920 0.95993 0.89947 0.90625 0.91682 0.91905 0.90810 0.89955 0.89646 0.89628 0.77176 0.91564 0.84835 0.85369 0.75433 0.85383 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.06 37.16 0.26 -1.23 16 2 C -0.01 -0.11 0.80 -156.81 -0.12 -0.24 16 3 C -0.14 -1.49 8.22 37.16 0.31 -1.18 16 4 C 0.47 7.32 6.42 36.01 0.23 7.55 16 5 O -0.51 -8.80 14.86 -18.75 -0.28 -9.08 16 6 O -0.32 -5.84 9.56 -45.88 -0.44 -6.28 16 7 C 0.06 1.13 5.94 36.00 0.21 1.34 16 8 C 0.44 10.48 7.86 -10.99 -0.09 10.40 16 9 O -0.58 -15.77 16.08 -14.11 -0.23 -16.00 16 10 N -0.55 -13.91 5.29 -10.96 -0.06 -13.96 16 11 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 12 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16 13 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 14 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 15 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 C -0.08 -0.89 4.38 -104.61 -0.46 -1.35 16 20 C -0.09 -0.95 8.97 -39.61 -0.36 -1.30 16 21 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 22 C 0.10 1.07 6.71 -39.21 -0.26 0.80 16 23 O -0.50 -4.47 13.50 -19.42 -0.26 -4.73 16 24 C -0.15 -1.56 9.99 -39.43 -0.39 -1.95 16 25 C -0.07 -0.80 7.92 -39.61 -0.31 -1.12 16 26 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 28 H 0.06 0.64 7.50 -51.93 -0.39 0.25 16 29 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.95 8.11 -51.93 -0.42 0.52 16 32 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 33 H 0.09 1.49 8.13 -51.93 -0.42 1.06 16 34 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.13 1.07 5.89 -52.49 -0.31 0.76 16 37 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.39 1.67 9.06 45.56 0.41 2.09 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.44 7.51 -52.49 -0.39 1.04 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -33.50 347.62 -6.18 -39.68 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.24 Total: 10.84 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.62 Total: 2.01 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.67 Total: -37.24 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.21 Total: -36.10 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.50 -6.18 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773735183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.068 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds