Wall clock time and date at job start Fri Apr 10 2020 14:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 O 1.20830 * 119.99594 * 120.00100 * 4 2 1 6 6 O 1.34222 * 120.00024 * 299.72383 * 4 2 1 7 7 C 1.45201 * 116.99867 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.47187 * 180.02562 * 7 6 4 9 9 O 1.21290 * 120.00256 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00187 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99746 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00065 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00128 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99724 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47285 * 60.00152 * 15 13 11 17 17 H 1.48504 * 109.46935 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47006 * 299.99730 * 15 13 11 19 19 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 20 20 C 1.38262 * 119.94309 * 359.73145 * 19 2 1 21 21 C 1.38149 * 120.05406 * 179.72308 * 20 19 2 22 22 C 1.38736 * 119.94346 * 0.56862 * 21 20 19 23 23 O 1.35898 * 120.05512 * 179.67684 * 22 21 20 24 24 C 1.38732 * 119.88482 * 359.70580 * 22 21 20 25 25 C 1.38139 * 119.94543 * 359.97438 * 24 22 21 26 26 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 27 27 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 28 28 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 31 31 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 32 32 H 1.09009 * 109.46864 * 300.00062 * 7 6 4 33 33 H 1.09001 * 109.47271 * 60.00074 * 7 6 4 34 34 H 0.96997 * 120.00313 * 0.02562 * 10 8 7 35 35 H 0.96999 * 120.00163 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.97584 * 359.97210 * 20 19 2 37 37 H 1.08003 * 120.03130 * 180.24700 * 21 20 19 38 38 H 0.96697 * 114.00344 * 270.02390 * 23 22 21 39 39 H 1.08001 * 120.02355 * 179.97438 * 24 22 21 40 40 H 1.08002 * 119.96794 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7269 -1.6928 1.1198 6 8 1.7125 -0.2484 2.4496 7 6 2.2318 -0.9825 3.5897 8 6 1.7722 -0.3221 4.8639 9 8 1.0759 0.6699 4.8160 10 7 2.1348 -0.8338 6.0569 11 6 1.7171 -0.2327 7.2162 12 1 1.0971 0.6507 7.1734 13 6 2.0915 -0.7599 8.4461 14 7 2.8462 -1.8344 8.4981 15 14 1.5217 0.0587 10.0256 16 1 0.0376 0.0626 10.0737 17 1 2.0523 -0.6924 11.1916 18 1 2.0221 1.4563 10.0671 19 6 2.0323 -0.7105 -1.2304 20 6 1.1328 -1.2405 -2.1368 21 6 1.5908 -1.8873 -3.2684 22 6 2.9545 -2.0151 -3.4888 23 8 3.4075 -2.6567 -4.5979 24 6 3.8550 -1.4874 -2.5748 25 6 3.3919 -0.8358 -1.4482 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.8641 -2.0082 3.5595 33 1 3.3212 -0.9857 3.5543 34 1 2.6919 -1.6268 6.0954 35 1 3.1072 -2.2027 9.3567 36 1 0.0713 -1.1452 -1.9622 37 1 0.8878 -2.2976 -3.9783 38 1 3.5381 -3.6071 -4.4767 39 1 4.9171 -1.5860 -2.7440 40 1 4.0926 -0.4252 -0.7362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773735183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:12 Heat of formation + Delta-G solvation = -164.949076 kcal Electronic energy + Delta-G solvation = -24605.321271 eV Core-core repulsion = 20770.497295 eV Total energy + Delta-G solvation = -3834.823976 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.14489 -40.71984 -40.00934 -38.41485 -37.36030 -36.04569 -35.75107 -33.42349 -32.12367 -30.30952 -29.60078 -28.42077 -26.73476 -25.17765 -23.56887 -23.30830 -21.45339 -20.89802 -20.08398 -19.38380 -18.48973 -18.19707 -17.72764 -17.33704 -16.83851 -16.60503 -16.41724 -15.96215 -15.77450 -15.61415 -15.27674 -14.82882 -14.50714 -14.23064 -13.94504 -13.69809 -13.57427 -13.54054 -13.26214 -13.06466 -12.95932 -12.93669 -12.84783 -12.49518 -12.18056 -12.13345 -12.02331 -11.86357 -11.57541 -11.46252 -11.26210 -10.51979 -10.12940 -9.93407 -9.51739 -8.53019 -6.03866 0.15508 0.40268 1.06294 1.36187 1.37248 1.45151 1.55914 1.86153 2.28804 2.64899 3.03394 3.12392 3.26550 3.40759 3.62720 3.75431 3.89987 4.04510 4.05168 4.07523 4.13186 4.20042 4.40532 4.56670 4.71564 4.73491 4.78043 4.80835 4.90864 5.04409 5.14063 5.20982 5.30116 5.35823 5.36531 5.44506 5.58137 5.85277 5.87899 6.44330 6.61690 6.84492 7.01789 7.38697 7.91918 8.63831 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.033960 B = 0.002551 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.308308 B =10973.832141 C =11402.383265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.004 4.004 3 C -0.139 4.139 4 C 0.464 3.536 5 O -0.524 6.524 6 O -0.336 6.336 7 C 0.070 3.930 8 C 0.438 3.562 9 O -0.615 6.615 10 N -0.558 5.558 11 C -0.338 4.338 12 H 0.085 0.915 13 C -0.009 4.009 14 N -0.916 5.916 15 Si 0.998 3.002 16 H -0.269 1.269 17 H -0.270 1.270 18 H -0.269 1.269 19 C -0.092 4.092 20 C -0.093 4.093 21 C -0.150 4.150 22 C 0.103 3.897 23 O -0.510 6.510 24 C -0.157 4.157 25 C -0.084 4.084 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.399 0.601 35 H 0.281 0.719 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.410 0.590 39 H 0.137 0.863 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 -1.379 -22.649 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.006 4.006 3 C -0.196 4.196 4 C 0.307 3.693 5 O -0.413 6.413 6 O -0.251 6.251 7 C -0.008 4.008 8 C 0.225 3.775 9 O -0.502 6.502 10 N -0.196 5.196 11 C -0.467 4.467 12 H 0.103 0.897 13 C -0.210 4.210 14 N -0.556 5.556 15 Si 0.821 3.179 16 H -0.194 1.194 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.092 4.092 20 C -0.110 4.110 21 C -0.169 4.169 22 C 0.058 3.942 23 O -0.323 6.323 24 C -0.175 4.175 25 C -0.102 4.102 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.269 0.731 39 H 0.155 0.845 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.001 -0.596 -22.761 22.791 hybrid contribution 0.584 -0.914 1.350 1.732 sum -0.417 -1.510 -21.411 21.468 Atomic orbital electron populations 1.22039 0.89511 1.03690 1.05036 1.19443 0.99240 0.96340 0.85531 1.21938 1.01597 0.91409 1.04671 1.24366 0.77072 0.82769 0.85067 1.90643 1.36464 1.26758 1.87426 1.86555 1.69302 1.54721 1.14491 1.22511 1.00393 0.95643 0.82217 1.20052 0.85524 0.86962 0.85012 1.90522 1.43087 1.29106 1.87445 1.41747 1.46109 1.27615 1.04105 1.19694 1.31545 1.11754 0.83713 0.89670 1.26141 0.96068 0.96557 1.02233 1.69668 1.35636 1.21877 1.28446 0.84912 0.78704 0.78184 0.76104 1.19418 1.19433 1.19435 1.19407 0.93895 1.00682 0.95187 1.21294 1.00906 0.95884 0.92962 1.21627 0.95078 1.01708 0.98451 1.18628 0.91696 0.97062 0.86785 1.84748 1.87587 1.27293 1.32671 1.21513 1.00819 1.01080 0.94110 1.20895 0.95188 0.97670 0.96425 0.91396 0.87524 0.91356 0.92109 0.88290 0.91271 0.87889 0.87874 0.76642 0.90955 0.82706 0.83225 0.73083 0.84546 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 7.06 71.98 0.51 -2.21 16 2 C 0.00 -0.10 0.80 -53.67 -0.04 -0.14 16 3 C -0.14 -2.82 8.22 71.98 0.59 -2.23 16 4 C 0.46 14.45 6.42 71.24 0.46 14.91 16 5 O -0.52 -18.07 14.86 21.95 0.33 -17.75 16 6 O -0.34 -12.32 9.56 -44.98 -0.43 -12.75 16 7 C 0.07 2.65 5.94 71.23 0.42 3.07 16 8 C 0.44 21.35 7.86 87.66 0.69 22.04 16 9 O -0.61 -34.66 16.08 15.74 0.25 -34.41 16 10 N -0.56 -28.65 5.29 -306.98 -1.62 -30.28 16 11 C -0.34 -18.92 9.68 84.04 0.81 -18.10 16 12 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 13 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 14 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 15 Si 1.00 41.84 29.55 68.60 2.03 43.87 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 C -0.09 -1.98 4.38 -19.85 -0.09 -2.07 16 20 C -0.09 -1.64 8.97 22.25 0.20 -1.44 16 21 C -0.15 -2.53 9.99 22.37 0.22 -2.30 16 22 C 0.10 1.92 6.71 22.51 0.15 2.07 16 23 O -0.51 -7.97 13.50 -92.40 -1.25 -9.22 16 24 C -0.16 -3.20 9.99 22.36 0.22 -2.98 16 25 C -0.08 -1.91 7.92 22.25 0.18 -1.73 16 26 H 0.07 1.48 8.12 -2.38 -0.02 1.46 16 27 H 0.11 1.31 7.52 -2.39 -0.02 1.29 16 28 H 0.07 1.22 7.50 -2.39 -0.02 1.20 16 29 H 0.06 1.24 7.38 -2.39 -0.02 1.22 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.58 8.11 -2.39 -0.02 1.57 16 32 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 33 H 0.10 3.55 8.13 -2.39 -0.02 3.53 16 34 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 35 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.16 1.97 5.89 -2.91 -0.02 1.96 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.41 2.60 9.06 -74.06 -0.67 1.92 16 39 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.12 2.73 7.51 -2.91 -0.02 2.71 16 Total: -1.00 -72.05 347.62 4.07 -67.98 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.31 Total: 32.10 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.79 Total: 8.85 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.34 Total: -78.67 kcal Atomic # 8 Polarization: -73.03 SS G_CDS: -1.10 Total: -74.13 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -72.05 4.07 -67.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773735183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.968 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds