Wall clock time and date at job start Fri Apr 10 2020 14:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35733 * 117.00145 * 2 1 4 4 C 1.38929 * 119.60317 * 180.02562 * 3 2 1 5 5 C 1.38296 * 119.18815 * 179.97438 * 4 3 2 6 6 C 1.39447 * 118.42382 * 359.97438 * 5 4 3 7 7 N 1.39905 * 120.42799 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00365 * 34.96398 * 7 6 5 9 9 O 1.21392 * 119.99710 * 355.27392 * 8 7 6 10 10 C 1.49338 * 120.00228 * 175.27496 * 8 7 6 11 11 O 1.21359 * 120.00034 * 5.92301 * 10 8 7 12 12 N 1.34777 * 119.99977 * 185.92539 * 10 8 7 13 13 C 1.46500 * 119.99969 * 356.42681 * 12 10 8 14 14 C 1.46500 * 119.99966 * 176.42994 * 12 10 8 15 15 H 1.09002 * 109.46727 * 359.97438 * 14 12 10 16 16 C 1.52995 * 109.47310 * 119.99727 * 14 12 10 17 17 C 1.50696 * 109.47011 * 239.99975 * 14 12 10 18 18 H 1.07998 * 119.99956 * 359.97438 * 17 14 12 19 19 C 1.37880 * 119.99980 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00058 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99938 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47083 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47130 * 299.99968 * 21 19 17 24 24 H 1.48507 * 109.46999 * 60.00065 * 21 19 17 25 25 C 1.38728 * 119.13873 * 0.25177 * 6 5 4 26 26 N 1.31935 * 120.72692 * 359.45668 * 25 6 5 27 27 H 1.09003 * 109.47357 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47195 * 299.99808 * 1 2 3 29 29 H 1.08996 * 109.47393 * 59.99950 * 1 2 3 30 30 H 1.07990 * 120.40409 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.78249 * 180.02562 * 5 4 3 32 32 H 0.97002 * 119.99648 * 214.96506 * 7 6 5 33 33 H 1.09005 * 109.46867 * 275.98359 * 13 12 10 34 34 H 1.08995 * 109.47469 * 35.97688 * 13 12 10 35 35 H 1.09001 * 109.47295 * 155.98440 * 13 12 10 36 36 H 1.08994 * 109.47566 * 179.97438 * 16 14 12 37 37 H 1.09006 * 109.47052 * 300.00335 * 16 14 12 38 38 H 1.09004 * 109.47235 * 59.99680 * 16 14 12 39 39 H 0.96994 * 119.99854 * 180.02562 * 20 19 17 40 40 H 1.07998 * 119.63376 * 179.74578 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4331 1.2724 -0.0005 5 6 4.0520 2.5092 -0.0011 6 6 3.2524 3.6516 -0.0016 7 7 3.8344 4.9238 -0.0016 8 6 4.9848 5.1387 -0.6700 9 8 5.5611 4.2110 -1.2001 10 6 5.5506 6.5179 -0.7586 11 8 5.0350 7.4261 -0.1406 12 7 6.6338 6.7540 -1.5250 13 6 7.3032 5.6446 -2.2088 14 6 7.1420 8.1199 -1.6742 15 1 6.5197 8.8040 -1.0972 16 6 8.5828 8.1866 -1.1639 17 6 7.1053 8.5134 -3.1284 18 1 6.7404 7.8157 -3.8676 19 6 7.5386 9.7639 -3.5153 20 7 7.9834 10.6133 -2.6153 21 14 7.4938 10.2514 -5.3180 22 1 8.0087 11.6360 -5.4693 23 1 8.3410 9.3190 -6.1042 24 1 6.0953 10.1870 -5.8136 25 6 1.8723 3.5102 0.0038 26 7 1.3173 2.3133 -0.0015 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0213 0.3668 -0.0014 31 1 5.1291 2.5882 -0.0019 32 1 3.4099 5.6513 0.4795 33 1 8.0027 5.1649 -1.5241 34 1 6.5597 4.9181 -2.5365 35 1 7.8453 6.0254 -3.0744 36 1 8.9610 9.2028 -1.2753 37 1 8.6093 7.9019 -0.1121 38 1 9.2048 7.5025 -1.7412 39 1 8.2878 11.4931 -2.8875 40 1 1.2454 4.3896 0.0076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131877355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:45 Heat of formation + Delta-G solvation = -45.662739 kcal Electronic energy + Delta-G solvation = -24811.043496 eV Core-core repulsion = 21013.684915 eV Total energy + Delta-G solvation = -3797.358581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24787 -40.25476 -38.58892 -37.69097 -35.93762 -34.75394 -32.81549 -32.50556 -29.98096 -29.51999 -27.50313 -26.31540 -25.33978 -24.82022 -23.84732 -22.73281 -20.83239 -19.50415 -18.60597 -17.85319 -17.39287 -16.82440 -16.43106 -16.19033 -16.03880 -15.58675 -15.15375 -14.74648 -14.52061 -14.42519 -14.01326 -13.59151 -13.35986 -13.31530 -12.89103 -12.56854 -12.43237 -12.13782 -11.86807 -11.68680 -11.62082 -11.15029 -10.92288 -10.82440 -10.76607 -10.63673 -10.34773 -10.24399 -10.04761 -9.74504 -9.29100 -8.85881 -8.50736 -8.18610 -7.79666 -6.16079 -4.24904 0.80305 1.02330 1.81080 2.52569 2.92083 3.24509 3.29524 3.31637 3.47096 3.66387 3.91029 4.09987 4.32844 4.61333 4.68421 4.81135 4.92760 5.06560 5.07271 5.15675 5.31345 5.41493 5.51899 5.81706 5.92789 6.05977 6.16022 6.34028 6.57909 6.65087 6.70659 6.89878 6.96590 7.03414 7.19704 7.33868 7.57392 7.60756 7.77531 7.91889 8.04032 8.28508 8.52290 8.80067 9.41487 10.89307 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.028948 B = 0.002785 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.026160 B =10052.077392 C =10217.996793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.300 3.700 4 C -0.169 4.169 5 C -0.043 4.043 6 C 0.064 3.936 7 N -0.645 5.645 8 C 0.510 3.490 9 O -0.502 6.502 10 C 0.494 3.506 11 O -0.536 6.536 12 N -0.549 5.549 13 C 0.068 3.932 14 C 0.255 3.745 15 H 0.067 0.933 16 C -0.147 4.147 17 C -0.531 4.531 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.902 3.098 22 H -0.285 1.285 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.121 3.879 26 N -0.522 5.522 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.146 0.854 31 H 0.159 0.841 32 H 0.425 0.575 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.013 0.987 38 H 0.033 0.967 39 H 0.266 0.734 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 -16.946 5.901 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.121 3.879 4 C -0.190 4.190 5 C -0.070 4.070 6 C -0.033 4.033 7 N -0.293 5.293 8 C 0.294 3.706 9 O -0.377 6.377 10 C 0.274 3.726 11 O -0.415 6.415 12 N -0.279 5.279 13 C -0.075 4.075 14 C 0.155 3.845 15 H 0.085 0.915 16 C -0.205 4.205 17 C -0.569 4.569 18 H 0.080 0.920 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.729 3.271 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.038 4.038 26 N -0.245 5.245 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.177 0.823 32 H 0.263 0.737 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.032 0.968 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.368 -17.210 5.807 20.915 hybrid contribution 0.463 0.821 -0.829 1.255 sum -9.905 -16.390 4.978 19.787 Atomic orbital electron populations 1.22841 0.77350 1.02826 1.02468 1.86240 1.22804 1.24449 1.88148 1.19835 0.89450 0.84614 0.93988 1.21011 0.91720 0.99266 1.07000 1.21644 1.01905 0.89708 0.93717 1.18650 0.93078 0.85755 1.05852 1.43114 1.24794 1.10354 1.51004 1.21027 0.80747 0.91027 0.77774 1.90639 1.58469 1.44835 1.43711 1.19521 0.83028 0.87269 0.82739 1.90728 1.60557 1.44803 1.45430 1.48287 1.25369 1.11587 1.42688 1.22191 0.98520 0.89100 0.97682 1.19184 0.92222 0.75621 0.97429 0.91542 1.22090 0.98268 1.04140 0.96000 1.21238 1.43890 0.99959 0.91858 0.92023 1.24883 0.94677 0.96027 0.98024 1.69860 1.42076 1.07207 1.33236 0.86499 0.78537 0.77611 0.84440 1.21089 1.20109 1.20162 1.22244 0.90696 0.94393 0.96439 1.67282 1.40115 0.98246 1.18865 0.88746 0.92341 0.92308 0.83664 0.82334 0.73692 0.93401 0.89288 0.90384 0.88484 0.96781 0.94810 0.92452 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.34 10.48 -18.91 -0.20 -3.54 16 3 C 0.30 3.54 7.49 -17.13 -0.13 3.41 16 4 C -0.17 -1.86 10.03 -39.30 -0.39 -2.26 16 5 C -0.04 -0.51 8.80 -39.11 -0.34 -0.85 16 6 C 0.06 0.77 6.32 -83.54 -0.53 0.24 16 7 N -0.64 -8.37 5.34 -10.18 -0.05 -8.43 16 8 C 0.51 8.26 7.63 -11.64 -0.09 8.17 16 9 O -0.50 -8.30 10.61 5.46 0.06 -8.24 16 10 C 0.49 9.84 7.73 -11.64 -0.09 9.75 16 11 O -0.54 -11.80 15.82 5.49 0.09 -11.71 16 12 N -0.55 -11.67 2.75 -175.82 -0.48 -12.15 16 13 C 0.07 1.24 8.49 59.85 0.51 1.74 16 14 C 0.25 6.31 2.63 -69.09 -0.18 6.13 16 15 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 16 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 17 C -0.53 -13.97 7.95 -34.44 -0.27 -14.25 16 18 H 0.06 1.60 7.43 -52.49 -0.39 1.21 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 21 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.12 1.32 11.12 -17.33 -0.19 1.13 16 26 N -0.52 -6.18 9.20 -13.15 -0.12 -6.30 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.16 1.96 6.31 -52.49 -0.33 1.63 16 32 H 0.42 4.86 8.30 -40.82 -0.34 4.53 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.55 5.36 -51.94 -0.28 1.27 16 35 H 0.08 1.47 7.12 -51.93 -0.37 1.10 16 36 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -30.11 339.43 -5.29 -35.40 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.87 Total: 4.78 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -0.43 Total: 13.18 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.03 Total: -50.56 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.11 -5.29 -35.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131877355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.261 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds