Wall clock time and date at job start Fri Apr 10 2020 14:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35733 * 117.00145 * 2 1 4 4 C 1.38929 * 119.60317 * 180.02562 * 3 2 1 5 5 C 1.38296 * 119.18815 * 179.97438 * 4 3 2 6 6 C 1.39447 * 118.42382 * 359.97438 * 5 4 3 7 7 N 1.39905 * 120.42799 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00365 * 34.96398 * 7 6 5 9 9 O 1.21392 * 119.99710 * 355.27392 * 8 7 6 10 10 C 1.49338 * 120.00228 * 175.27496 * 8 7 6 11 11 O 1.21359 * 120.00034 * 5.92301 * 10 8 7 12 12 N 1.34777 * 119.99977 * 185.92539 * 10 8 7 13 13 C 1.46500 * 119.99969 * 356.42681 * 12 10 8 14 14 C 1.46500 * 119.99966 * 176.42994 * 12 10 8 15 15 H 1.09002 * 109.46727 * 359.97438 * 14 12 10 16 16 C 1.52995 * 109.47310 * 119.99727 * 14 12 10 17 17 C 1.50696 * 109.47011 * 239.99975 * 14 12 10 18 18 H 1.07998 * 119.99956 * 359.97438 * 17 14 12 19 19 C 1.37880 * 119.99980 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00058 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99938 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47083 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47130 * 299.99968 * 21 19 17 24 24 H 1.48507 * 109.46999 * 60.00065 * 21 19 17 25 25 C 1.38728 * 119.13873 * 0.25177 * 6 5 4 26 26 N 1.31935 * 120.72692 * 359.45668 * 25 6 5 27 27 H 1.09003 * 109.47357 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47195 * 299.99808 * 1 2 3 29 29 H 1.08996 * 109.47393 * 59.99950 * 1 2 3 30 30 H 1.07990 * 120.40409 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.78249 * 180.02562 * 5 4 3 32 32 H 0.97002 * 119.99648 * 214.96506 * 7 6 5 33 33 H 1.09005 * 109.46867 * 275.98359 * 13 12 10 34 34 H 1.08995 * 109.47469 * 35.97688 * 13 12 10 35 35 H 1.09001 * 109.47295 * 155.98440 * 13 12 10 36 36 H 1.08994 * 109.47566 * 179.97438 * 16 14 12 37 37 H 1.09006 * 109.47052 * 300.00335 * 16 14 12 38 38 H 1.09004 * 109.47235 * 59.99680 * 16 14 12 39 39 H 0.96994 * 119.99854 * 180.02562 * 20 19 17 40 40 H 1.07998 * 119.63376 * 179.74578 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4331 1.2724 -0.0005 5 6 4.0520 2.5092 -0.0011 6 6 3.2524 3.6516 -0.0016 7 7 3.8344 4.9238 -0.0016 8 6 4.9848 5.1387 -0.6700 9 8 5.5611 4.2110 -1.2001 10 6 5.5506 6.5179 -0.7586 11 8 5.0350 7.4261 -0.1406 12 7 6.6338 6.7540 -1.5250 13 6 7.3032 5.6446 -2.2088 14 6 7.1420 8.1199 -1.6742 15 1 6.5197 8.8040 -1.0972 16 6 8.5828 8.1866 -1.1639 17 6 7.1053 8.5134 -3.1284 18 1 6.7404 7.8157 -3.8676 19 6 7.5386 9.7639 -3.5153 20 7 7.9834 10.6133 -2.6153 21 14 7.4938 10.2514 -5.3180 22 1 8.0087 11.6360 -5.4693 23 1 8.3410 9.3190 -6.1042 24 1 6.0953 10.1870 -5.8136 25 6 1.8723 3.5102 0.0038 26 7 1.3173 2.3133 -0.0015 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0213 0.3668 -0.0014 31 1 5.1291 2.5882 -0.0019 32 1 3.4099 5.6513 0.4795 33 1 8.0027 5.1649 -1.5241 34 1 6.5597 4.9181 -2.5365 35 1 7.8453 6.0254 -3.0744 36 1 8.9610 9.2028 -1.2753 37 1 8.6093 7.9019 -0.1121 38 1 9.2048 7.5025 -1.7412 39 1 8.2878 11.4931 -2.8875 40 1 1.2454 4.3896 0.0076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131877355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:44 Heat of formation + Delta-G solvation = -67.425496 kcal Electronic energy + Delta-G solvation = -24811.987200 eV Core-core repulsion = 21013.684915 eV Total energy + Delta-G solvation = -3798.302285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35592 -41.40085 -39.88981 -38.74527 -37.54300 -36.02397 -34.68805 -33.39379 -31.48620 -30.83524 -28.27114 -27.78694 -27.33108 -26.18957 -24.72188 -23.91626 -22.29370 -20.95253 -19.47231 -19.14223 -18.64293 -18.31737 -17.81982 -17.60231 -17.07814 -16.93343 -16.77156 -16.10259 -15.63522 -15.37817 -15.17851 -14.99566 -14.49880 -14.47344 -14.30519 -13.95791 -13.78637 -13.56538 -13.34765 -13.00464 -12.76447 -12.72462 -12.71608 -12.49287 -12.24126 -12.22622 -12.11231 -11.63778 -11.23761 -10.95462 -10.74447 -10.55448 -10.23203 -9.52680 -9.10043 -8.17161 -6.33566 -0.18957 0.12189 0.51078 1.23739 1.44058 1.45108 1.53009 2.09542 2.13731 2.38634 2.58679 2.67764 3.11497 3.22709 3.30925 3.76421 3.92001 4.04955 4.46043 4.46755 4.49427 4.55764 4.62266 4.72382 4.72569 4.81235 4.86615 4.90381 4.99810 5.00444 5.18939 5.37485 5.40584 5.44939 5.61608 5.83878 5.97740 6.09857 6.18265 6.46683 6.63402 6.69851 6.74747 6.98036 7.37170 8.87293 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.028948 B = 0.002785 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.026160 B =10052.077392 C =10217.996793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.294 3.706 4 C -0.169 4.169 5 C -0.046 4.046 6 C 0.046 3.954 7 N -0.626 5.626 8 C 0.521 3.479 9 O -0.506 6.506 10 C 0.488 3.512 11 O -0.564 6.564 12 N -0.561 5.561 13 C 0.074 3.926 14 C 0.259 3.741 15 H 0.024 0.976 16 C -0.134 4.134 17 C -0.544 4.544 18 H 0.061 0.939 19 C 0.021 3.979 20 N -0.913 5.913 21 Si 0.964 3.036 22 H -0.282 1.282 23 H -0.265 1.265 24 H -0.276 1.276 25 C 0.129 3.871 26 N -0.531 5.531 27 H 0.122 0.878 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.432 0.568 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.024 0.976 38 H 0.045 0.955 39 H 0.267 0.733 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 -18.721 5.343 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.115 3.885 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.050 4.050 7 N -0.275 5.275 8 C 0.304 3.696 9 O -0.381 6.381 10 C 0.270 3.730 11 O -0.444 6.444 12 N -0.291 5.291 13 C -0.068 4.068 14 C 0.158 3.842 15 H 0.042 0.958 16 C -0.192 4.192 17 C -0.582 4.582 18 H 0.079 0.921 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.789 3.211 22 H -0.208 1.208 23 H -0.190 1.190 24 H -0.202 1.202 25 C -0.029 4.029 26 N -0.255 5.255 27 H 0.140 0.860 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.182 0.818 31 H 0.173 0.827 32 H 0.272 0.728 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.203 -19.035 5.264 22.706 hybrid contribution 0.599 1.285 -0.579 1.532 sum -10.604 -17.750 4.684 21.200 Atomic orbital electron populations 1.23073 0.75808 1.04710 1.02313 1.86238 1.24368 1.23978 1.87845 1.20096 0.89923 0.84982 0.93478 1.21187 0.91759 0.99634 1.06436 1.21677 1.01809 0.90138 0.93720 1.18737 0.93642 0.85013 1.07578 1.42871 1.23546 1.11201 1.49846 1.20123 0.81778 0.89003 0.78717 1.90634 1.58943 1.44108 1.44411 1.20135 0.82326 0.88813 0.81703 1.90704 1.61126 1.46329 1.46289 1.48239 1.26252 1.10993 1.43599 1.22274 0.98859 0.88162 0.97533 1.18812 0.92185 0.77026 0.96173 0.95758 1.21895 0.97512 1.03015 0.96813 1.21481 1.43891 1.00280 0.92592 0.92114 1.25669 0.94308 0.96006 1.01986 1.69987 1.42633 1.07463 1.35021 0.85521 0.78470 0.77438 0.79678 1.20756 1.19016 1.20152 1.22589 0.90455 0.94985 0.94902 1.67358 1.40282 0.98492 1.19347 0.85951 0.92291 0.92610 0.81782 0.82741 0.72830 0.91724 0.88250 0.91178 0.90774 0.95701 0.93594 0.92409 0.79449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.66 16 2 O -0.32 -6.23 10.48 -90.57 -0.95 -7.17 16 3 C 0.29 6.38 7.49 84.80 0.63 7.02 16 4 C -0.17 -3.41 10.03 22.45 0.23 -3.19 16 5 C -0.05 -1.04 8.80 22.58 0.20 -0.84 16 6 C 0.05 1.05 6.32 38.26 0.24 1.29 16 7 N -0.63 -15.49 5.34 -304.46 -1.63 -17.11 16 8 C 0.52 16.36 7.63 87.23 0.67 17.03 16 9 O -0.51 -15.97 10.61 -3.38 -0.04 -16.01 16 10 C 0.49 19.48 7.73 87.23 0.67 20.16 16 11 O -0.56 -25.30 15.82 -3.27 -0.05 -25.35 16 12 N -0.56 -23.88 2.75 -828.52 -2.28 -26.16 16 13 C 0.07 2.60 8.49 127.77 1.08 3.69 16 14 C 0.26 13.09 2.63 44.24 0.12 13.21 16 15 H 0.02 1.43 6.90 -2.39 -0.02 1.41 16 16 C -0.13 -6.30 8.97 71.98 0.65 -5.65 16 17 C -0.54 -28.89 7.95 25.60 0.20 -28.68 16 18 H 0.06 3.16 7.43 -2.91 -0.02 3.14 16 19 C 0.02 1.10 5.30 84.66 0.45 1.55 16 20 N -0.91 -50.85 11.32 21.45 0.24 -50.61 16 21 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.13 2.57 11.12 84.79 0.94 3.51 16 26 N -0.53 -11.56 9.20 -308.38 -2.84 -14.40 16 27 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 30 H 0.16 2.58 8.06 -2.92 -0.02 2.55 16 31 H 0.16 3.59 6.31 -2.91 -0.02 3.58 16 32 H 0.43 9.42 8.30 -92.71 -0.77 8.65 16 33 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.10 3.33 5.36 -2.48 -0.01 3.31 16 35 H 0.07 2.57 7.12 -2.39 -0.02 2.56 16 36 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 37 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.04 1.99 7.67 -2.38 -0.02 1.97 16 39 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 40 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -64.50 339.43 2.06 -62.43 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.32 Total: 19.53 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 7.26 Total: 30.74 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -6.50 Total: -108.28 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -1.04 Total: -48.53 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -64.50 2.06 -62.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131877355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.994 kcal (2) G-P(sol) polarization free energy of solvation -64.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds