Wall clock time and date at job start Fri Apr 10 2020 14:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35728 * 117.00098 * 2 1 4 4 N 1.32150 * 119.73236 * 359.97438 * 3 2 1 5 5 C 1.31987 * 121.72816 * 179.97438 * 4 3 2 6 6 C 1.38102 * 120.98489 * 0.02562 * 5 4 3 7 7 C 1.38699 * 119.35997 * 0.26924 * 6 5 4 8 8 C 1.39041 * 118.41943 * 359.48635 * 7 6 5 9 9 N 1.39876 * 120.51721 * 180.23978 * 8 7 6 10 10 C 1.34782 * 119.99663 * 327.51201 * 9 8 7 11 11 O 1.21383 * 119.99936 * 5.38774 * 10 9 8 12 12 C 1.49334 * 119.99535 * 185.39081 * 10 9 8 13 13 O 1.21363 * 120.00389 * 359.35244 * 12 10 9 14 14 N 1.34781 * 119.99601 * 179.35787 * 12 10 9 15 15 C 1.46493 * 120.00026 * 354.32184 * 14 12 10 16 16 C 1.46502 * 119.99683 * 174.32488 * 14 12 10 17 17 H 1.09001 * 109.47315 * 359.97438 * 16 14 12 18 18 C 1.53003 * 109.47227 * 119.99855 * 16 14 12 19 19 C 1.50704 * 109.46930 * 239.99803 * 16 14 12 20 20 H 1.07997 * 119.99702 * 359.97438 * 19 16 14 21 21 C 1.37873 * 119.99719 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99774 * 180.02562 * 21 19 16 23 23 Si 1.86796 * 120.00311 * 359.97438 * 21 19 16 24 24 H 1.48501 * 109.47208 * 90.00375 * 23 21 19 25 25 H 1.48505 * 109.47606 * 210.00430 * 23 21 19 26 26 H 1.48503 * 109.47326 * 330.00594 * 23 21 19 27 27 H 1.08997 * 109.47019 * 60.00640 * 1 2 3 28 28 H 1.09007 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47749 * 300.00318 * 1 2 3 30 30 H 1.07998 * 119.50945 * 180.02562 * 5 4 3 31 31 H 1.08008 * 120.32352 * 179.97438 * 6 5 4 32 32 H 1.08001 * 120.79454 * 179.72100 * 7 6 5 33 33 H 0.96996 * 120.00357 * 147.51446 * 9 8 7 34 34 H 1.09002 * 109.47393 * 84.11836 * 15 14 12 35 35 H 1.09007 * 109.46891 * 204.11776 * 15 14 12 36 36 H 1.09000 * 109.47431 * 324.11990 * 15 14 12 37 37 H 1.09001 * 109.46665 * 59.99866 * 18 16 14 38 38 H 1.08995 * 109.47047 * 179.97438 * 18 16 14 39 39 H 1.08997 * 109.47016 * 300.00201 * 18 16 14 40 40 H 0.97002 * 119.99682 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 7 1.3203 2.3143 -0.0005 5 6 1.8782 3.5104 0.0000 6 6 3.2517 3.6543 0.0005 7 6 4.0539 2.5229 -0.0051 8 6 3.4392 1.2758 -0.0002 9 7 4.2060 0.1059 -0.0006 10 6 5.3966 0.0808 -0.6319 11 8 5.8485 1.0981 -1.1158 12 6 6.1595 -1.1987 -0.7360 13 8 5.7132 -2.2134 -0.2419 14 7 7.3440 -1.2266 -1.3785 15 6 7.8244 -0.0343 -2.0811 16 6 8.1509 -2.4494 -1.3743 17 1 7.6353 -3.2231 -0.8055 18 6 8.3603 -2.9272 -2.8126 19 6 9.4881 -2.1666 -0.7392 20 1 9.7142 -1.1751 -0.3756 21 6 10.4229 -3.1733 -0.6235 22 7 11.5896 -2.9267 -0.0688 23 14 10.0319 -4.8879 -1.2531 24 1 10.4510 -5.0013 -2.6733 25 1 10.7629 -5.8927 -0.4397 26 1 8.5712 -5.1331 -1.1470 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.2512 4.3898 -0.0001 31 1 3.6969 4.6384 0.0005 32 1 5.1305 2.6085 -0.0094 33 1 3.8810 -0.6872 0.4535 34 1 8.3263 0.6264 -1.3743 35 1 8.5248 -0.3304 -2.8621 36 1 6.9795 0.4882 -2.5298 37 1 8.8762 -2.1533 -3.3811 38 1 8.9611 -3.8367 -2.8095 39 1 7.3933 -3.1317 -3.2720 40 1 12.2472 -3.6351 0.0130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132023017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:52 Heat of formation + Delta-G solvation = -36.892501 kcal Electronic energy + Delta-G solvation = -25303.288790 eV Core-core repulsion = 21506.310515 eV Total energy + Delta-G solvation = -3796.978275 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35334 -40.20352 -38.43853 -37.90306 -36.14168 -35.03038 -32.73287 -31.98418 -30.50694 -30.15446 -27.49399 -26.46522 -25.44474 -24.99797 -23.46202 -22.92615 -20.88705 -19.49659 -18.58567 -18.00035 -17.29122 -16.99037 -16.59745 -16.22860 -16.06695 -15.65159 -15.37137 -15.13588 -14.55295 -14.34757 -13.90828 -13.68373 -13.41011 -13.22495 -13.00099 -12.76649 -12.40467 -12.28809 -12.01480 -11.94012 -11.84658 -11.46065 -11.25202 -11.08617 -10.86883 -10.75460 -10.20743 -10.08152 -9.70618 -9.55923 -9.42274 -8.92206 -8.70402 -8.22084 -7.91739 -6.20752 -4.23084 0.76196 1.06800 1.74571 2.51169 2.80215 3.19309 3.32928 3.34269 3.43235 3.63617 3.80762 4.14310 4.29012 4.56665 4.67260 4.82842 4.96731 5.07763 5.09377 5.11661 5.18397 5.40570 5.65676 5.84157 5.89569 5.98947 6.12334 6.15937 6.24876 6.32221 6.36339 6.50908 6.74904 6.82854 6.97386 7.06756 7.13934 7.48990 7.56423 7.72480 7.98480 8.30268 8.48686 8.80814 9.38255 10.91650 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.003365 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.076455 B = 8320.171054 C = 8943.276085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.307 6.307 3 C 0.301 3.699 4 N -0.523 5.523 5 C 0.116 3.884 6 C -0.188 4.188 7 C -0.051 4.051 8 C 0.084 3.916 9 N -0.637 5.637 10 C 0.512 3.488 11 O -0.501 6.501 12 C 0.499 3.501 13 O -0.534 6.534 14 N -0.547 5.547 15 C 0.082 3.918 16 C 0.227 3.773 17 H 0.066 0.934 18 C -0.163 4.163 19 C -0.532 4.532 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.891 5.891 23 Si 0.883 3.117 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.262 1.262 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.161 0.839 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.427 0.573 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.355 10.766 -1.536 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.214 6.214 3 C 0.119 3.881 4 N -0.247 5.247 5 C -0.039 4.039 6 C -0.208 4.208 7 C -0.078 4.078 8 C -0.013 4.013 9 N -0.284 5.284 10 C 0.295 3.705 11 O -0.375 6.375 12 C 0.279 3.721 13 O -0.412 6.412 14 N -0.277 5.277 15 C -0.061 4.061 16 C 0.126 3.874 17 H 0.084 0.916 18 C -0.220 4.220 19 C -0.570 4.570 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.528 5.528 23 Si 0.712 3.288 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.187 1.187 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.178 0.822 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.266 0.734 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.801 10.459 -1.612 22.451 hybrid contribution 0.530 -1.011 -0.108 1.146 sum -19.271 9.448 -1.719 21.531 Atomic orbital electron populations 1.22860 0.76900 1.03088 1.02373 1.86241 1.23162 1.24026 1.87963 1.19624 0.87540 0.85565 0.95417 1.67322 1.39824 0.98512 1.19038 1.22372 0.93073 0.93453 0.95025 1.21964 0.94383 0.99718 1.04777 1.21810 1.02565 0.89368 0.94074 1.17777 0.87461 0.87994 1.08082 1.43008 1.18826 1.13802 1.52805 1.20805 0.81326 0.90511 0.77843 1.90667 1.66984 1.34874 1.45007 1.19533 0.83034 0.87771 0.81725 1.90728 1.68159 1.34175 1.48158 1.47860 1.16845 1.15305 1.47682 1.22017 1.00415 0.86459 0.97184 1.19512 0.91628 0.82502 0.93757 0.91626 1.22469 0.99552 1.01029 0.98983 1.21106 0.96551 0.99325 1.40043 0.90077 1.24847 0.94633 0.98597 0.94481 1.69867 1.05988 1.33605 1.43346 0.86927 0.79211 0.84370 0.78283 1.20245 1.21992 1.18715 0.92297 0.88489 0.92267 0.82200 0.84008 0.81951 0.73384 0.92249 0.90942 0.90301 0.92179 0.92798 0.94527 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.72 10.02 -18.89 -0.19 -3.91 16 3 C 0.30 3.83 7.51 -16.92 -0.13 3.70 16 4 N -0.52 -6.01 9.21 -13.15 -0.12 -6.13 16 5 C 0.12 1.07 11.17 -17.53 -0.20 0.87 16 6 C -0.19 -1.75 10.10 -39.46 -0.40 -2.14 16 7 C -0.05 -0.61 8.83 -39.11 -0.35 -0.96 16 8 C 0.08 1.13 6.39 -83.39 -0.53 0.60 16 9 N -0.64 -9.26 5.20 -10.08 -0.05 -9.31 16 10 C 0.51 8.56 7.63 -11.64 -0.09 8.47 16 11 O -0.50 -8.38 10.59 5.47 0.06 -8.32 16 12 C 0.50 9.93 7.72 -11.64 -0.09 9.84 16 13 O -0.53 -11.67 15.83 5.49 0.09 -11.58 16 14 N -0.55 -11.41 2.75 -175.81 -0.48 -11.89 16 15 C 0.08 1.47 8.47 59.84 0.51 1.98 16 16 C 0.23 5.38 2.21 -69.08 -0.15 5.23 16 17 H 0.07 1.69 5.97 -51.93 -0.31 1.38 16 18 C -0.16 -3.43 8.66 37.16 0.32 -3.11 16 19 C -0.53 -14.49 8.95 -34.44 -0.31 -14.80 16 20 H 0.08 2.39 7.89 -52.49 -0.41 1.98 16 21 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 22 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 23 Si 0.88 21.27 24.37 -169.99 -4.14 17.13 16 24 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 30 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.16 2.08 6.10 -52.49 -0.32 1.76 16 33 H 0.43 5.95 8.01 -40.82 -0.33 5.63 16 34 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 35 H 0.07 1.26 6.44 -51.93 -0.33 0.92 16 36 H 0.08 1.29 5.86 -51.93 -0.30 0.98 16 37 H 0.06 1.18 6.67 -51.93 -0.35 0.84 16 38 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -31.92 331.17 -4.20 -36.12 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.66 Total: 5.35 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -0.46 Total: 13.18 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.12 Total: -52.97 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.04 Total: -23.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.14 Total: 17.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.92 -4.20 -36.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132023017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.774 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds