Wall clock time and date at job start Fri Apr 10 2020 14:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35728 * 117.00098 * 2 1 4 4 N 1.32150 * 119.73236 * 359.97438 * 3 2 1 5 5 C 1.31987 * 121.72816 * 179.97438 * 4 3 2 6 6 C 1.38102 * 120.98489 * 0.02562 * 5 4 3 7 7 C 1.38699 * 119.35997 * 0.26924 * 6 5 4 8 8 C 1.39041 * 118.41943 * 359.48635 * 7 6 5 9 9 N 1.39876 * 120.51721 * 180.23978 * 8 7 6 10 10 C 1.34782 * 119.99663 * 327.51201 * 9 8 7 11 11 O 1.21383 * 119.99936 * 5.38774 * 10 9 8 12 12 C 1.49334 * 119.99535 * 185.39081 * 10 9 8 13 13 O 1.21363 * 120.00389 * 359.35244 * 12 10 9 14 14 N 1.34781 * 119.99601 * 179.35787 * 12 10 9 15 15 C 1.46493 * 120.00026 * 354.32184 * 14 12 10 16 16 C 1.46502 * 119.99683 * 174.32488 * 14 12 10 17 17 H 1.09001 * 109.47315 * 359.97438 * 16 14 12 18 18 C 1.53003 * 109.47227 * 119.99855 * 16 14 12 19 19 C 1.50704 * 109.46930 * 239.99803 * 16 14 12 20 20 H 1.07997 * 119.99702 * 359.97438 * 19 16 14 21 21 C 1.37873 * 119.99719 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99774 * 180.02562 * 21 19 16 23 23 Si 1.86796 * 120.00311 * 359.97438 * 21 19 16 24 24 H 1.48501 * 109.47208 * 90.00375 * 23 21 19 25 25 H 1.48505 * 109.47606 * 210.00430 * 23 21 19 26 26 H 1.48503 * 109.47326 * 330.00594 * 23 21 19 27 27 H 1.08997 * 109.47019 * 60.00640 * 1 2 3 28 28 H 1.09007 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47749 * 300.00318 * 1 2 3 30 30 H 1.07998 * 119.50945 * 180.02562 * 5 4 3 31 31 H 1.08008 * 120.32352 * 179.97438 * 6 5 4 32 32 H 1.08001 * 120.79454 * 179.72100 * 7 6 5 33 33 H 0.96996 * 120.00357 * 147.51446 * 9 8 7 34 34 H 1.09002 * 109.47393 * 84.11836 * 15 14 12 35 35 H 1.09007 * 109.46891 * 204.11776 * 15 14 12 36 36 H 1.09000 * 109.47431 * 324.11990 * 15 14 12 37 37 H 1.09001 * 109.46665 * 59.99866 * 18 16 14 38 38 H 1.08995 * 109.47047 * 179.97438 * 18 16 14 39 39 H 1.08997 * 109.47016 * 300.00201 * 18 16 14 40 40 H 0.97002 * 119.99682 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 7 1.3203 2.3143 -0.0005 5 6 1.8782 3.5104 0.0000 6 6 3.2517 3.6543 0.0005 7 6 4.0539 2.5229 -0.0051 8 6 3.4392 1.2758 -0.0002 9 7 4.2060 0.1059 -0.0006 10 6 5.3966 0.0808 -0.6319 11 8 5.8485 1.0981 -1.1158 12 6 6.1595 -1.1987 -0.7360 13 8 5.7132 -2.2134 -0.2419 14 7 7.3440 -1.2266 -1.3785 15 6 7.8244 -0.0343 -2.0811 16 6 8.1509 -2.4494 -1.3743 17 1 7.6353 -3.2231 -0.8055 18 6 8.3603 -2.9272 -2.8126 19 6 9.4881 -2.1666 -0.7392 20 1 9.7142 -1.1751 -0.3756 21 6 10.4229 -3.1733 -0.6235 22 7 11.5896 -2.9267 -0.0688 23 14 10.0319 -4.8879 -1.2531 24 1 10.4510 -5.0013 -2.6733 25 1 10.7629 -5.8927 -0.4397 26 1 8.5712 -5.1331 -1.1470 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.2512 4.3898 -0.0001 31 1 3.6969 4.6384 0.0005 32 1 5.1305 2.6085 -0.0094 33 1 3.8810 -0.6872 0.4535 34 1 8.3263 0.6264 -1.3743 35 1 8.5248 -0.3304 -2.8621 36 1 6.9795 0.4882 -2.5298 37 1 8.8762 -2.1533 -3.3811 38 1 8.9611 -3.8367 -2.8095 39 1 7.3933 -3.1317 -3.2720 40 1 12.2472 -3.6351 0.0130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132023017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:51 Heat of formation + Delta-G solvation = -62.140015 kcal Electronic energy + Delta-G solvation = -25304.383604 eV Core-core repulsion = 21506.310515 eV Total energy + Delta-G solvation = -3798.073089 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45724 -41.40988 -39.81301 -38.80538 -37.73388 -36.32263 -34.71092 -32.86788 -32.33525 -31.09383 -28.22781 -27.96871 -27.23460 -26.53129 -24.49844 -23.93440 -22.36353 -20.93149 -19.56674 -19.23473 -18.82848 -18.50666 -17.77736 -17.67851 -17.24942 -17.00671 -16.80959 -16.14139 -15.94373 -15.53649 -15.12700 -14.89944 -14.84640 -14.48379 -14.31220 -14.14235 -13.99132 -13.66058 -13.64695 -13.26660 -13.07758 -12.71326 -12.66294 -12.40286 -12.20319 -12.10125 -12.06998 -11.55620 -11.41382 -11.00540 -10.81845 -10.55634 -10.24510 -9.65255 -9.12445 -8.36498 -6.43452 -0.22274 0.20840 0.43254 1.18976 1.28483 1.37505 1.46051 1.99484 2.03414 2.27145 2.42382 2.72795 2.97836 3.16280 3.38414 3.80490 4.03654 4.10899 4.30636 4.39065 4.40362 4.44976 4.45071 4.51388 4.61071 4.69603 4.77009 4.81304 4.94404 4.99735 5.09310 5.18397 5.21641 5.37028 5.47517 5.52519 5.79211 6.10230 6.14786 6.37058 6.53996 6.60967 6.75109 6.85772 7.22606 8.79411 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.003365 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.076455 B = 8320.171054 C = 8943.276085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.324 6.324 3 C 0.293 3.707 4 N -0.532 5.532 5 C 0.125 3.875 6 C -0.179 4.179 7 C -0.060 4.060 8 C 0.053 3.947 9 N -0.626 5.626 10 C 0.519 3.481 11 O -0.504 6.504 12 C 0.494 3.506 13 O -0.558 6.558 14 N -0.557 5.557 15 C 0.087 3.913 16 C 0.229 3.771 17 H 0.045 0.955 18 C -0.157 4.157 19 C -0.533 4.533 20 H 0.044 0.956 21 C 0.026 3.974 22 N -0.937 5.937 23 Si 0.942 3.058 24 H -0.253 1.253 25 H -0.295 1.295 26 H -0.255 1.255 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.201 0.799 31 H 0.175 0.825 32 H 0.152 0.848 33 H 0.428 0.572 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.548 11.707 -2.689 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.231 6.231 3 C 0.112 3.888 4 N -0.256 5.256 5 C -0.030 4.030 6 C -0.199 4.199 7 C -0.087 4.087 8 C -0.043 4.043 9 N -0.272 5.272 10 C 0.302 3.698 11 O -0.379 6.379 12 C 0.276 3.724 13 O -0.438 6.438 14 N -0.287 5.287 15 C -0.054 4.054 16 C 0.127 3.873 17 H 0.063 0.937 18 C -0.214 4.214 19 C -0.571 4.571 20 H 0.062 0.938 21 C -0.174 4.174 22 N -0.576 5.576 23 Si 0.768 3.232 24 H -0.178 1.178 25 H -0.222 1.222 26 H -0.180 1.180 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.218 0.782 31 H 0.193 0.807 32 H 0.170 0.830 33 H 0.267 0.733 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.038 11.431 -2.774 24.981 hybrid contribution 1.095 -1.116 0.348 1.602 sum -20.943 10.316 -2.425 23.471 Atomic orbital electron populations 1.23076 0.75255 1.04611 1.02601 1.86218 1.24890 1.24147 1.87894 1.19699 0.87363 0.86205 0.95550 1.67440 1.39831 0.98915 1.19369 1.23115 0.93646 0.93844 0.92394 1.22316 0.94330 1.00169 1.03079 1.21890 1.02468 0.89978 0.94357 1.17967 0.87871 0.87720 1.10769 1.42827 1.17986 1.14547 1.51875 1.20064 0.81969 0.89070 0.78734 1.90658 1.67276 1.34274 1.45705 1.20088 0.82878 0.88796 0.80666 1.90699 1.68796 1.35461 1.48808 1.47881 1.17114 1.15306 1.48413 1.22088 1.01203 0.85380 0.96778 1.19238 0.89677 0.83372 0.95015 0.93700 1.22349 1.01011 1.01015 0.97064 1.21277 0.98313 0.97747 1.39808 0.93783 1.25653 0.94318 1.02707 0.94699 1.70001 1.07281 1.35095 1.45203 0.85965 0.79260 0.79159 0.78804 1.17795 1.22206 1.17979 0.92166 0.86426 0.91843 0.78222 0.80748 0.83042 0.73330 0.93270 0.90406 0.88313 0.90968 0.93292 0.92086 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.38 113.37 1.18 1.79 16 2 O -0.32 -7.60 10.02 -90.51 -0.91 -8.50 16 3 C 0.29 7.13 7.51 84.97 0.64 7.77 16 4 N -0.53 -10.99 9.21 -308.42 -2.84 -13.83 16 5 C 0.13 1.87 11.17 84.64 0.95 2.81 16 6 C -0.18 -2.78 10.10 22.35 0.23 -2.56 16 7 C -0.06 -1.36 8.83 22.57 0.20 -1.16 16 8 C 0.05 1.39 6.39 38.37 0.24 1.64 16 9 N -0.63 -18.22 5.20 -304.16 -1.58 -19.80 16 10 C 0.52 17.39 7.63 87.23 0.67 18.06 16 11 O -0.50 -16.66 10.59 -3.35 -0.04 -16.69 16 12 C 0.49 19.84 7.72 87.23 0.67 20.51 16 13 O -0.56 -24.73 15.83 -3.29 -0.05 -24.78 16 14 N -0.56 -23.33 2.75 -828.49 -2.28 -25.61 16 15 C 0.09 3.11 8.47 127.77 1.08 4.19 16 16 C 0.23 10.87 2.21 44.25 0.10 10.96 16 17 H 0.05 2.32 5.97 -2.39 -0.01 2.31 16 18 C -0.16 -6.33 8.66 71.98 0.62 -5.70 16 19 C -0.53 -29.74 8.95 25.60 0.23 -29.51 16 20 H 0.04 2.72 7.89 -2.91 -0.02 2.69 16 21 C 0.03 1.45 5.45 84.65 0.46 1.91 16 22 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 23 Si 0.94 43.68 24.37 68.60 1.67 45.35 16 24 H -0.25 -10.74 6.87 99.48 0.68 -10.06 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.26 -11.48 6.53 99.48 0.65 -10.83 16 27 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 28 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16 30 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.15 3.79 6.10 -2.91 -0.02 3.77 16 33 H 0.43 12.12 8.01 -92.71 -0.74 11.38 16 34 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 35 H 0.08 2.65 6.44 -2.38 -0.02 2.64 16 36 H 0.10 3.12 5.86 -2.39 -0.01 3.11 16 37 H 0.07 2.71 6.67 -2.39 -0.02 2.69 16 38 H 0.05 2.02 3.27 -2.39 -0.01 2.01 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -70.42 331.17 1.81 -68.61 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.27 Total: 21.13 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 7.26 Total: 30.71 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -6.40 Total: -115.84 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.99 Total: -49.97 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.67 Total: 45.35 kcal Total: -70.42 1.81 -68.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132023017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.473 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds