Wall clock time and date at job start Fri Apr 10 2020 14:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46995 * 2 1 4 4 C 1.50694 * 109.47140 * 119.99793 * 2 1 3 5 5 H 1.08004 * 120.00110 * 120.00167 * 4 2 1 6 6 C 1.37884 * 120.00214 * 299.99958 * 4 2 1 7 7 N 1.31518 * 119.99556 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47182 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47195 * 300.00068 * 8 6 4 11 11 H 1.48501 * 109.47151 * 60.00204 * 8 6 4 12 12 N 1.46500 * 109.47355 * 240.00052 * 2 1 3 13 13 C 1.34777 * 120.00223 * 84.99946 * 12 2 1 14 14 O 1.21596 * 119.99618 * 359.97438 * 13 12 2 15 15 N 1.34770 * 119.99931 * 180.02562 * 13 12 2 16 16 C 1.40160 * 119.99996 * 175.38034 * 15 13 12 17 17 C 1.38828 * 120.01433 * 214.81004 * 16 15 13 18 18 C 1.38092 * 119.98459 * 179.79001 * 17 16 15 19 19 C 1.38711 * 120.01732 * 0.48197 * 18 17 16 20 20 O 1.35980 * 119.99029 * 179.72516 * 19 18 17 21 21 C 1.42901 * 116.99861 * 0.02562 * 20 19 18 22 22 C 1.50700 * 109.47096 * 179.97438 * 21 20 19 23 23 N 1.34774 * 120.00052 * 180.02562 * 22 21 20 24 24 O 1.21281 * 119.99740 * 0.02562 * 22 21 20 25 25 C 1.38713 * 120.02393 * 359.75312 * 19 18 17 26 26 C 1.38094 * 120.01809 * 0.02562 * 25 19 18 27 27 H 1.08999 * 109.47406 * 60.00544 * 1 2 3 28 28 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47461 * 300.00486 * 1 2 3 30 30 H 0.97000 * 119.99752 * 180.02562 * 7 6 4 31 31 H 0.96994 * 119.99627 * 264.99901 * 12 2 1 32 32 H 0.97000 * 120.00231 * 355.37424 * 15 13 12 33 33 H 1.08008 * 120.00883 * 0.02562 * 17 16 15 34 34 H 1.08004 * 119.99574 * 180.23508 * 18 17 16 35 35 H 1.08997 * 109.47272 * 300.00427 * 21 20 19 36 36 H 1.09002 * 109.46844 * 60.00001 * 21 20 19 37 37 H 0.97002 * 119.99574 * 359.97438 * 23 22 21 38 38 H 0.96997 * 120.00351 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.99316 * 180.02562 * 25 19 18 40 40 H 1.08001 * 120.00975 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 1.8259 -0.4204 5.2205 10 1 1.8257 -2.5201 4.0078 11 1 3.8063 -1.1208 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8574 1.1614 -2.4118 15 7 2.5959 -0.6537 -3.4576 16 6 2.6383 0.0185 -4.6868 17 6 2.3836 -0.6710 -5.8645 18 6 2.4213 -0.0071 -7.0748 19 6 2.7233 1.3461 -7.1149 20 8 2.7657 1.9981 -8.3074 21 6 2.4882 1.2273 -9.4783 22 6 2.5804 2.1114 -10.6952 23 7 2.3554 1.5971 -11.9205 24 8 2.8570 3.2858 -10.5719 25 6 2.9827 2.0345 -5.9389 26 6 2.9409 1.3729 -4.7275 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7087 1.1614 3.4843 31 1 2.2490 -1.6317 -1.1525 32 1 2.8897 -1.5763 -3.3990 33 1 2.1523 -1.7255 -5.8339 34 1 2.2194 -0.5425 -7.9908 35 1 3.2136 0.4180 -9.5610 36 1 1.4839 0.8093 -9.4086 37 1 2.1346 0.6577 -12.0190 38 1 2.4151 2.1661 -12.7038 39 1 3.2174 3.0882 -5.9706 40 1 3.1432 1.9089 -3.8120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155346546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:43 Heat of formation + Delta-G solvation = -73.009712 kcal Electronic energy + Delta-G solvation = -23914.022156 eV Core-core repulsion = 20115.477721 eV Total energy + Delta-G solvation = -3798.544435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64140 -39.94264 -39.05014 -37.27709 -34.93692 -34.19905 -33.93590 -32.36973 -31.08749 -29.68213 -28.77820 -27.43411 -25.25425 -23.21070 -22.59722 -21.40713 -20.80004 -19.81767 -18.57834 -18.29058 -17.90837 -17.35563 -16.67897 -16.63109 -15.98291 -15.60571 -15.03266 -14.80152 -14.53334 -14.37553 -14.16331 -13.96356 -13.45975 -13.09061 -13.03326 -12.69286 -12.52310 -12.37027 -11.81029 -11.45468 -11.11061 -11.00738 -10.96704 -10.74251 -10.36157 -10.33674 -10.23739 -10.22135 -9.71764 -9.40493 -9.06075 -8.90771 -8.57011 -8.02945 -7.52064 -6.13134 -4.22556 1.37512 1.44662 2.12267 2.39990 3.18180 3.25009 3.30704 3.32748 3.53711 3.64135 4.01636 4.29619 4.31639 4.54259 4.62954 4.80473 4.84292 4.94275 5.19263 5.31586 5.46145 5.69765 5.95657 6.01401 6.24389 6.26449 6.45674 6.65300 6.73011 6.80278 6.97728 7.04467 7.12077 7.23396 7.34715 7.45754 7.61174 7.75087 7.82848 7.99334 8.14775 8.71906 8.84236 9.23401 9.45824 10.92817 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.049285 B = 0.002140 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.986948 B =13083.926619 C =13278.382906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.719 5.719 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.696 5.696 16 C 0.148 3.852 17 C -0.117 4.117 18 C -0.191 4.191 19 C 0.097 3.903 20 O -0.293 6.293 21 C 0.041 3.959 22 C 0.519 3.481 23 N -0.853 5.853 24 O -0.517 6.517 25 C -0.124 4.124 26 C -0.080 4.080 27 H 0.015 0.985 28 H 0.025 0.975 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.386 0.614 32 H 0.402 0.598 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.403 0.597 38 H 0.408 0.592 39 H 0.134 0.866 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -6.700 -25.322 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.460 6.460 15 N -0.345 5.345 16 C 0.052 3.948 17 C -0.138 4.138 18 C -0.211 4.211 19 C 0.052 3.948 20 O -0.206 6.206 21 C -0.038 4.038 22 C 0.302 3.698 23 N -0.419 5.419 24 O -0.391 6.391 25 C -0.144 4.144 26 C -0.100 4.100 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.218 0.782 32 H 0.236 0.764 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.231 0.769 38 H 0.239 0.761 39 H 0.151 0.849 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.738 -4.534 -24.803 25.362 hybrid contribution 0.278 -2.016 0.407 2.075 sum 3.016 -6.550 -24.396 25.439 Atomic orbital electron populations 1.22104 0.98537 0.99065 1.00967 1.18681 0.90860 0.93769 0.78831 0.93232 1.21162 1.32606 1.13300 0.90253 0.92141 1.24888 0.94821 0.94983 0.99040 1.69895 1.35663 1.22358 1.24045 0.86484 0.79138 0.79527 0.81777 1.21120 1.20208 1.20185 1.45862 1.68577 1.13292 1.09260 1.16172 0.78617 0.85521 0.80425 1.90872 1.57080 1.14120 1.83952 1.42810 1.68800 1.16246 1.06608 1.17497 1.00293 0.92509 0.84468 1.20615 1.02161 1.00153 0.90907 1.20859 1.08383 0.93359 0.98451 1.18929 0.99882 0.91037 0.84933 1.86158 1.86203 1.36472 1.11733 1.22366 1.03071 0.94036 0.84377 1.20149 0.76594 0.88400 0.84639 1.43664 1.75004 1.15176 1.08089 1.90821 1.45507 1.16689 1.86045 1.20372 1.04181 1.00715 0.89095 1.21322 0.96867 0.93655 0.98189 0.96563 0.95558 0.89090 0.92468 0.78192 0.76372 0.85584 0.85606 0.88970 0.88946 0.76889 0.76053 0.84853 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.28 7.08 2.56 -69.09 -0.18 6.90 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.72 -14.68 5.07 -59.82 -0.30 -14.98 16 13 C 0.69 13.82 8.37 -86.92 -0.73 13.09 16 14 O -0.58 -13.88 13.44 5.28 0.07 -13.81 16 15 N -0.70 -10.41 5.35 -14.19 -0.08 -10.49 16 16 C 0.15 2.17 6.30 -83.61 -0.53 1.65 16 17 C -0.12 -1.34 9.96 -39.42 -0.39 -1.74 16 18 C -0.19 -2.00 9.03 -39.46 -0.36 -2.36 16 19 C 0.10 1.24 6.69 -39.23 -0.26 0.98 16 20 O -0.29 -3.66 9.67 -39.59 -0.38 -4.04 16 21 C 0.04 0.30 5.22 36.01 0.19 0.49 16 22 C 0.52 4.48 8.18 -10.99 -0.09 4.39 16 23 N -0.85 -3.08 8.87 31.22 0.28 -2.80 16 24 O -0.52 -7.35 17.34 -14.35 -0.25 -7.60 16 25 C -0.12 -1.79 9.98 -39.46 -0.39 -2.18 16 26 C -0.08 -1.28 8.69 -39.41 -0.34 -1.62 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.39 6.66 8.56 -40.82 -0.35 6.31 16 32 H 0.40 4.52 8.84 -40.82 -0.36 4.16 16 33 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.13 0.86 6.29 -52.48 -0.33 0.52 16 35 H 0.09 0.43 7.66 -51.93 -0.40 0.03 16 36 H 0.09 0.47 7.66 -51.93 -0.40 0.07 16 37 H 0.40 0.03 8.83 -40.82 -0.36 -0.33 16 38 H 0.41 1.19 8.93 -40.82 -0.36 0.82 16 39 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.15 2.78 6.22 -52.49 -0.33 2.46 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -36.06 345.27 -7.81 -43.87 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.83 Total: 9.66 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -3.13 Total: 3.65 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.53 Total: -52.35 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.56 Total: -25.46 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.06 -7.81 -43.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155346546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.137 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds