Wall clock time and date at job start Fri Apr 10 2020 14:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46995 * 2 1 4 4 C 1.50694 * 109.47140 * 119.99793 * 2 1 3 5 5 H 1.08004 * 120.00110 * 120.00167 * 4 2 1 6 6 C 1.37884 * 120.00214 * 299.99958 * 4 2 1 7 7 N 1.31518 * 119.99556 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47182 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47195 * 300.00068 * 8 6 4 11 11 H 1.48501 * 109.47151 * 60.00204 * 8 6 4 12 12 N 1.46500 * 109.47355 * 240.00052 * 2 1 3 13 13 C 1.34777 * 120.00223 * 84.99946 * 12 2 1 14 14 O 1.21596 * 119.99618 * 359.97438 * 13 12 2 15 15 N 1.34770 * 119.99931 * 180.02562 * 13 12 2 16 16 C 1.40160 * 119.99996 * 175.38034 * 15 13 12 17 17 C 1.38828 * 120.01433 * 214.81004 * 16 15 13 18 18 C 1.38092 * 119.98459 * 179.79001 * 17 16 15 19 19 C 1.38711 * 120.01732 * 0.48197 * 18 17 16 20 20 O 1.35980 * 119.99029 * 179.72516 * 19 18 17 21 21 C 1.42901 * 116.99861 * 0.02562 * 20 19 18 22 22 C 1.50700 * 109.47096 * 179.97438 * 21 20 19 23 23 N 1.34774 * 120.00052 * 180.02562 * 22 21 20 24 24 O 1.21281 * 119.99740 * 0.02562 * 22 21 20 25 25 C 1.38713 * 120.02393 * 359.75312 * 19 18 17 26 26 C 1.38094 * 120.01809 * 0.02562 * 25 19 18 27 27 H 1.08999 * 109.47406 * 60.00544 * 1 2 3 28 28 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47461 * 300.00486 * 1 2 3 30 30 H 0.97000 * 119.99752 * 180.02562 * 7 6 4 31 31 H 0.96994 * 119.99627 * 264.99901 * 12 2 1 32 32 H 0.97000 * 120.00231 * 355.37424 * 15 13 12 33 33 H 1.08008 * 120.00883 * 0.02562 * 17 16 15 34 34 H 1.08004 * 119.99574 * 180.23508 * 18 17 16 35 35 H 1.08997 * 109.47272 * 300.00427 * 21 20 19 36 36 H 1.09002 * 109.46844 * 60.00001 * 21 20 19 37 37 H 0.97002 * 119.99574 * 359.97438 * 23 22 21 38 38 H 0.96997 * 120.00351 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.99316 * 180.02562 * 25 19 18 40 40 H 1.08001 * 120.00975 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 1.8259 -0.4204 5.2205 10 1 1.8257 -2.5201 4.0078 11 1 3.8063 -1.1208 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8574 1.1614 -2.4118 15 7 2.5959 -0.6537 -3.4576 16 6 2.6383 0.0185 -4.6868 17 6 2.3836 -0.6710 -5.8645 18 6 2.4213 -0.0071 -7.0748 19 6 2.7233 1.3461 -7.1149 20 8 2.7657 1.9981 -8.3074 21 6 2.4882 1.2273 -9.4783 22 6 2.5804 2.1114 -10.6952 23 7 2.3554 1.5971 -11.9205 24 8 2.8570 3.2858 -10.5719 25 6 2.9827 2.0345 -5.9389 26 6 2.9409 1.3729 -4.7275 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7087 1.1614 3.4843 31 1 2.2490 -1.6317 -1.1525 32 1 2.8897 -1.5763 -3.3990 33 1 2.1523 -1.7255 -5.8339 34 1 2.2194 -0.5425 -7.9908 35 1 3.2136 0.4180 -9.5610 36 1 1.4839 0.8093 -9.4086 37 1 2.1346 0.6577 -12.0190 38 1 2.4151 2.1661 -12.7038 39 1 3.2174 3.0882 -5.9706 40 1 3.1432 1.9089 -3.8120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155346546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:42 Heat of formation + Delta-G solvation = -102.352792 kcal Electronic energy + Delta-G solvation = -23915.294567 eV Core-core repulsion = 20115.477721 eV Total energy + Delta-G solvation = -3799.816846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69643 -41.03671 -40.03087 -38.39973 -36.71558 -35.33300 -34.76637 -34.24611 -32.06257 -31.13491 -29.91098 -28.50502 -27.31430 -24.29807 -23.85925 -22.60875 -21.85912 -21.37740 -19.81039 -19.36690 -18.69457 -18.51876 -17.75920 -17.36537 -17.29532 -16.86163 -16.59369 -16.15630 -15.89495 -15.38713 -15.32680 -15.05495 -14.79726 -14.43761 -14.23004 -13.97392 -13.74440 -13.62378 -13.43073 -12.97622 -12.87300 -12.72319 -12.32129 -12.24327 -12.14231 -11.94397 -11.16565 -11.09644 -11.09224 -10.80334 -10.71759 -10.58257 -9.94844 -9.78789 -8.63760 -8.15773 -6.33281 0.37932 0.40011 1.46558 1.48992 1.51220 1.56632 1.73765 1.85034 2.20579 2.43765 2.86090 2.90644 3.14626 3.49012 3.78892 3.95750 4.01041 4.14416 4.19180 4.33316 4.45827 4.65598 4.75050 4.89680 4.94716 5.07695 5.11394 5.29412 5.34681 5.44632 5.54532 5.62385 5.69015 5.82136 5.87489 5.93229 6.11096 6.30953 6.33311 6.51296 6.74546 7.28263 7.29200 7.35809 7.72264 8.90426 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.049285 B = 0.002140 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.986948 B =13083.926619 C =13278.382906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.288 3.712 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.288 1.288 10 H -0.263 1.263 11 H -0.271 1.271 12 N -0.714 5.714 13 C 0.690 3.310 14 O -0.628 6.628 15 N -0.673 5.673 16 C 0.119 3.881 17 C -0.097 4.097 18 C -0.175 4.175 19 C 0.103 3.897 20 O -0.322 6.322 21 C 0.031 3.969 22 C 0.515 3.485 23 N -0.825 5.825 24 O -0.587 6.587 25 C -0.148 4.148 26 C -0.104 4.104 27 H 0.009 0.991 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.422 0.578 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.424 0.576 38 H 0.413 0.587 39 H 0.123 0.877 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -10.844 -27.630 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.184 3.816 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.214 1.214 10 H -0.187 1.187 11 H -0.196 1.196 12 N -0.366 5.366 13 C 0.391 3.609 14 O -0.509 6.509 15 N -0.323 5.323 16 C 0.024 3.976 17 C -0.117 4.117 18 C -0.193 4.193 19 C 0.057 3.943 20 O -0.236 6.236 21 C -0.047 4.047 22 C 0.299 3.701 23 N -0.392 5.392 24 O -0.467 6.467 25 C -0.167 4.167 26 C -0.125 4.125 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.261 0.739 33 H 0.184 0.816 34 H 0.195 0.805 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.256 0.744 38 H 0.246 0.754 39 H 0.141 0.859 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.802 -8.802 -27.215 28.740 hybrid contribution 0.265 -0.706 0.872 1.153 sum 3.067 -9.508 -26.344 28.175 Atomic orbital electron populations 1.21916 0.98420 0.99461 0.99453 1.18242 0.90897 0.91653 0.80772 0.98439 1.21498 1.32647 1.13649 0.90576 0.90631 1.25828 0.94917 0.95627 1.02388 1.70058 1.36917 1.23929 1.24676 0.85356 0.78566 0.78693 0.77439 1.21358 1.18731 1.19639 1.45414 1.68909 1.13956 1.08355 1.16302 0.78410 0.84972 0.81240 1.90859 1.58872 1.16369 1.84803 1.42394 1.67665 1.16858 1.05405 1.17738 1.02432 0.92231 0.85235 1.21010 0.99527 1.01731 0.89460 1.21366 1.05762 0.92136 1.00070 1.18955 0.98864 0.91952 0.84505 1.86130 1.86221 1.38436 1.12785 1.22817 1.06063 0.94021 0.81810 1.20526 0.75717 0.87639 0.86192 1.43470 1.72564 1.16379 1.06741 1.90803 1.49199 1.19576 1.87098 1.20323 1.05785 1.00669 0.89935 1.21049 0.99192 0.94837 0.97373 0.97156 0.93964 0.91468 0.92561 0.76046 0.73911 0.81612 0.80465 0.85166 0.85613 0.74368 0.75435 0.85902 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.29 15.00 2.56 44.24 0.11 15.11 16 3 H 0.00 -0.14 7.58 -2.38 -0.02 -0.16 16 4 C -0.55 -28.59 8.73 25.60 0.22 -28.37 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -52.79 11.32 21.45 0.24 -52.55 16 8 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 9 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 N -0.71 -29.34 5.07 -461.42 -2.34 -31.68 16 13 C 0.69 28.19 8.37 179.06 1.50 29.69 16 14 O -0.63 -31.85 13.44 -4.02 -0.05 -31.90 16 15 N -0.67 -19.52 5.35 -317.06 -1.70 -21.22 16 16 C 0.12 3.37 6.30 38.09 0.24 3.61 16 17 C -0.10 -1.82 9.96 22.38 0.22 -1.59 16 18 C -0.17 -2.84 9.03 22.35 0.20 -2.64 16 19 C 0.10 2.44 6.69 22.50 0.15 2.59 16 20 O -0.32 -7.55 9.67 -74.28 -0.72 -8.27 16 21 C 0.03 0.34 5.22 71.24 0.37 0.71 16 22 C 0.51 7.83 8.18 87.66 0.72 8.55 16 23 N -0.82 -3.42 8.87 -173.54 -1.54 -4.96 16 24 O -0.59 -16.85 17.34 16.00 0.28 -16.57 16 25 C -0.15 -4.46 9.98 22.35 0.22 -4.24 16 26 C -0.10 -3.52 8.69 22.38 0.19 -3.32 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 28 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 30 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.40 13.43 8.56 -92.71 -0.79 12.64 16 32 H 0.42 8.45 8.84 -92.71 -0.82 7.63 16 33 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.18 1.05 6.29 -2.91 -0.02 1.03 16 35 H 0.13 0.46 7.66 -2.39 -0.02 0.44 16 36 H 0.13 0.57 7.66 -2.39 -0.02 0.55 16 37 H 0.42 -1.80 8.83 -92.71 -0.82 -2.62 16 38 H 0.41 1.44 8.93 -92.71 -0.83 0.61 16 39 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.11 4.66 6.22 -2.91 -0.02 4.64 16 Total: -1.00 -86.01 345.27 -0.65 -86.66 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -2.12 Total: 21.69 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 5.27 Total: 15.06 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -5.33 Total: -110.41 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.49 Total: -56.73 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -86.01 -0.65 -86.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155346546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.692 kcal (2) G-P(sol) polarization free energy of solvation -86.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds