Wall clock time and date at job start Fri Apr 10 2020 14:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21693 * 120.00014 * 0.28042 * 5 4 2 7 7 C 1.46373 * 120.00147 * 180.27610 * 5 4 2 8 8 H 1.08002 * 120.00141 * 0.02562 * 7 5 4 9 9 C 1.40050 * 120.00087 * 179.97438 * 7 5 4 10 10 N 1.30674 * 120.00151 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46768 * 120.00068 * 11 9 7 14 14 H 1.48498 * 109.47283 * 240.00320 * 11 9 7 15 15 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 16 16 H 1.08998 * 109.46617 * 179.97438 * 15 2 1 17 17 C 1.52999 * 109.47038 * 60.00034 * 15 2 1 18 18 C 1.50693 * 109.47013 * 300.00008 * 15 2 1 19 19 O 1.21279 * 120.00304 * 359.97438 * 18 15 2 20 20 N 1.34776 * 119.99753 * 180.02562 * 18 15 2 21 21 C 1.39580 * 120.00466 * 180.02562 * 20 18 15 22 22 N 1.32277 * 119.72269 * 359.97438 * 21 20 18 23 23 C 1.31952 * 121.69526 * 179.97438 * 22 21 20 24 24 C 1.38092 * 120.94906 * 359.97438 * 23 22 21 25 25 C 1.38770 * 119.35672 * 0.02562 * 24 23 22 26 26 C 1.38801 * 118.44863 * 359.74885 * 25 24 23 27 27 O 1.35977 * 120.50040 * 180.24691 * 26 25 24 28 28 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 32 32 H 0.96991 * 119.99824 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.47113 * 299.99865 * 17 15 2 34 34 H 1.09003 * 109.47002 * 59.99785 * 17 15 2 35 35 H 1.08996 * 109.47008 * 179.97438 * 17 15 2 36 36 H 0.97007 * 120.00403 * 359.97438 * 20 18 15 37 37 H 1.07993 * 119.52772 * 179.97438 * 23 22 21 38 38 H 1.08006 * 120.31868 * 180.02562 * 24 23 22 39 39 H 1.08000 * 120.77610 * 180.02562 * 25 24 23 40 40 H 0.96705 * 113.99603 * 270.25154 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1417 -0.0196 -2.3585 6 8 1.8523 1.1612 -2.4131 7 6 2.6239 -0.7110 -3.5551 8 1 2.8805 -1.7590 -3.5068 9 6 2.7516 -0.0138 -4.7630 10 7 2.4408 1.2541 -4.8217 11 14 3.3677 -0.8961 -6.2900 12 1 3.6495 -2.3165 -5.9612 13 1 2.3313 -0.8304 -7.3515 14 1 4.6114 -0.2428 -6.7713 15 6 2.0400 -0.7213 1.2493 16 1 3.1300 -0.7216 1.2490 17 6 1.5300 -2.1638 1.2492 18 6 1.5377 -0.0109 2.4797 19 8 0.8408 0.9754 2.3684 20 7 1.8637 -0.4711 3.7037 21 6 1.3980 0.1865 4.8435 22 7 0.6375 1.2612 4.7159 23 6 0.1757 1.9124 5.7665 24 6 0.4712 1.4927 7.0485 25 6 1.2658 0.3697 7.2305 26 6 1.7337 -0.2984 6.1074 27 8 2.5113 -1.4062 6.2373 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.2490 -1.6318 -1.1527 32 1 2.5296 1.7369 -5.6582 33 1 0.4400 -2.1638 1.2492 34 1 1.8933 -2.6776 0.3592 35 1 1.8937 -2.6777 2.1389 36 1 2.4214 -1.2598 3.7928 37 1 -0.4421 2.7862 5.6218 38 1 0.0874 2.0332 7.9012 39 1 1.5108 0.0210 8.2229 40 1 3.4591 -1.2189 6.2782 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515165201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:25 Heat of formation + Delta-G solvation = -66.115917 kcal Electronic energy + Delta-G solvation = -24969.440515 eV Core-core repulsion = 21171.195018 eV Total energy + Delta-G solvation = -3798.245497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22297 -39.68984 -37.59622 -37.46279 -35.22166 -34.82887 -32.49260 -32.06535 -31.18300 -29.64640 -28.53270 -26.05725 -25.35232 -24.12935 -23.42364 -21.66808 -20.14051 -19.12794 -18.69102 -18.16589 -17.31584 -17.05847 -16.12605 -16.04349 -15.44218 -15.37928 -15.05532 -14.41380 -14.36158 -14.21543 -13.68656 -13.44755 -13.37577 -13.04003 -12.90603 -12.54333 -12.04717 -11.91264 -11.71599 -11.59846 -11.44195 -11.07313 -11.01191 -10.75887 -10.54198 -10.40625 -10.18183 -10.11966 -10.00763 -9.92804 -9.03524 -8.82446 -8.39140 -7.54382 -7.45409 -6.13963 -4.59809 0.70828 0.96836 2.64913 2.69281 3.15103 3.23060 3.27291 3.46968 3.74024 4.10755 4.18299 4.47711 4.63642 4.65387 4.79307 4.87067 4.96116 5.06439 5.16815 5.21330 5.40742 5.59249 5.73898 5.75426 5.79402 5.91895 6.00130 6.10089 6.22110 6.34025 6.39502 6.65961 6.84478 7.02583 7.09566 7.13501 7.47153 7.82015 7.97965 8.14220 8.25659 8.37800 9.06700 9.59523 10.65414 10.84995 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.002753 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.154841 B =10168.484104 C =10651.694692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.174 3.826 3 H 0.082 0.918 4 N -0.763 5.763 5 C 0.556 3.444 6 O -0.576 6.576 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.087 3.913 10 N -0.767 5.767 11 Si 0.906 3.094 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.115 4.115 16 H 0.101 0.899 17 C -0.146 4.146 18 C 0.510 3.490 19 O -0.454 6.454 20 N -0.659 5.659 21 C 0.350 3.650 22 N -0.461 5.461 23 C 0.128 3.872 24 C -0.196 4.196 25 C -0.074 4.074 26 C 0.010 3.990 27 O -0.488 6.488 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.377 0.623 32 H 0.267 0.733 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.418 0.582 37 H 0.163 0.837 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -6.133 24.089 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.100 0.900 4 N -0.418 5.418 5 C 0.359 3.641 6 O -0.459 6.459 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.133 4.133 10 N -0.396 5.396 11 Si 0.731 3.269 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.137 4.137 16 H 0.119 0.881 17 C -0.204 4.204 18 C 0.296 3.704 19 O -0.321 6.321 20 N -0.307 5.307 21 C 0.117 3.883 22 N -0.177 5.177 23 C -0.030 4.030 24 C -0.218 4.218 25 C -0.100 4.100 26 C -0.040 4.040 27 O -0.296 6.296 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.209 0.791 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.256 0.744 37 H 0.180 0.820 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.752 -4.392 22.853 23.283 hybrid contribution 1.430 -1.443 0.267 2.049 sum 0.678 -5.834 23.120 23.854 Atomic orbital electron populations 1.22411 0.96387 1.00698 1.03151 1.20145 0.93718 0.96753 0.82676 0.90007 1.46267 1.73424 1.12703 1.09441 1.18217 0.77796 0.86447 0.81617 1.90615 1.54382 1.16417 1.84447 1.20907 1.47093 0.97078 0.93197 0.91494 1.25708 0.93384 0.94461 0.99703 1.70036 1.35286 1.08224 1.26086 0.86342 0.78755 0.80245 0.81535 1.18842 1.20221 1.20228 1.21638 1.02277 0.96787 0.93039 0.88068 1.21853 1.02487 0.93569 1.02468 1.21007 0.80643 0.85083 0.83647 1.90783 1.32624 1.23506 1.85145 1.43818 1.51894 1.31010 1.03993 1.19030 0.93239 0.90351 0.85691 1.67782 1.10022 1.06142 1.33736 1.22779 0.95385 0.97700 0.87165 1.22021 1.02139 0.98529 0.99101 1.21682 0.96193 0.93609 0.98539 1.18821 1.02150 0.91768 0.91236 1.84917 1.21235 1.28107 1.95387 0.93920 0.90863 0.92156 0.79057 0.92212 0.91416 0.90626 0.92660 0.74435 0.82033 0.84394 0.84076 0.75805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 8.81 37.16 0.33 -3.04 16 2 C 0.17 3.48 2.04 -67.93 -0.14 3.34 16 3 H 0.08 1.96 7.54 -51.93 -0.39 1.57 16 4 N -0.76 -16.90 4.99 -55.22 -0.28 -17.18 16 5 C 0.56 15.90 7.71 -12.99 -0.10 15.80 16 6 O -0.58 -19.01 14.68 5.20 0.08 -18.93 16 7 C -0.55 -15.45 9.54 -35.63 -0.34 -15.79 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 10 N -0.77 -23.37 11.83 55.55 0.66 -22.71 16 11 Si 0.91 20.27 29.56 -169.99 -5.02 15.25 16 12 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 C -0.12 -1.66 2.72 -91.77 -0.25 -1.91 16 16 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 17 C -0.15 -1.69 8.56 37.16 0.32 -1.37 16 18 C 0.51 7.69 6.83 -10.99 -0.08 7.61 16 19 O -0.45 -8.64 11.91 5.56 0.07 -8.58 16 20 N -0.66 -7.70 5.28 -11.29 -0.06 -7.76 16 21 C 0.35 4.34 7.45 -154.43 -1.15 3.19 16 22 N -0.46 -6.56 7.88 -12.22 -0.10 -6.65 16 23 C 0.13 1.34 11.17 -17.55 -0.20 1.14 16 24 C -0.20 -1.52 10.10 -39.44 -0.40 -1.92 16 25 C -0.07 -0.58 10.12 -39.18 -0.40 -0.97 16 26 C 0.01 0.10 6.75 -38.92 -0.26 -0.16 16 27 O -0.49 -3.50 12.77 -19.67 -0.25 -3.75 16 28 H 0.04 0.76 6.43 -51.93 -0.33 0.42 16 29 H 0.07 1.46 5.51 -51.93 -0.29 1.17 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.38 7.16 6.85 -40.82 -0.28 6.88 16 32 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 33 H 0.07 0.84 6.43 -51.93 -0.33 0.51 16 34 H 0.07 0.86 6.51 -51.93 -0.34 0.52 16 35 H 0.05 0.47 7.57 -51.93 -0.39 0.08 16 36 H 0.42 3.49 7.46 -40.82 -0.30 3.19 16 37 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.39 1.03 9.06 45.56 0.41 1.45 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -39.65 337.48 -6.49 -46.14 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -3.91 Total: 10.82 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -2.76 Total: 8.28 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.23 Total: -54.31 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.11 Total: -31.26 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -39.65 -6.49 -46.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515165201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.981 kcal (2) G-P(sol) polarization free energy of solvation -39.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds