Wall clock time and date at job start Fri Apr 10 2020 14:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21693 * 120.00014 * 0.28042 * 5 4 2 7 7 C 1.46373 * 120.00147 * 180.27610 * 5 4 2 8 8 H 1.08002 * 120.00141 * 0.02562 * 7 5 4 9 9 C 1.40050 * 120.00087 * 179.97438 * 7 5 4 10 10 N 1.30674 * 120.00151 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99913 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46768 * 120.00068 * 11 9 7 14 14 H 1.48498 * 109.47283 * 240.00320 * 11 9 7 15 15 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 16 16 H 1.08998 * 109.46617 * 179.97438 * 15 2 1 17 17 C 1.52999 * 109.47038 * 60.00034 * 15 2 1 18 18 C 1.50693 * 109.47013 * 300.00008 * 15 2 1 19 19 O 1.21279 * 120.00304 * 359.97438 * 18 15 2 20 20 N 1.34776 * 119.99753 * 180.02562 * 18 15 2 21 21 C 1.39580 * 120.00466 * 180.02562 * 20 18 15 22 22 N 1.32277 * 119.72269 * 359.97438 * 21 20 18 23 23 C 1.31952 * 121.69526 * 179.97438 * 22 21 20 24 24 C 1.38092 * 120.94906 * 359.97438 * 23 22 21 25 25 C 1.38770 * 119.35672 * 0.02562 * 24 23 22 26 26 C 1.38801 * 118.44863 * 359.74885 * 25 24 23 27 27 O 1.35977 * 120.50040 * 180.24691 * 26 25 24 28 28 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 32 32 H 0.96991 * 119.99824 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.47113 * 299.99865 * 17 15 2 34 34 H 1.09003 * 109.47002 * 59.99785 * 17 15 2 35 35 H 1.08996 * 109.47008 * 179.97438 * 17 15 2 36 36 H 0.97007 * 120.00403 * 359.97438 * 20 18 15 37 37 H 1.07993 * 119.52772 * 179.97438 * 23 22 21 38 38 H 1.08006 * 120.31868 * 180.02562 * 24 23 22 39 39 H 1.08000 * 120.77610 * 180.02562 * 25 24 23 40 40 H 0.96705 * 113.99603 * 270.25154 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1417 -0.0196 -2.3585 6 8 1.8523 1.1612 -2.4131 7 6 2.6239 -0.7110 -3.5551 8 1 2.8805 -1.7590 -3.5068 9 6 2.7516 -0.0138 -4.7630 10 7 2.4408 1.2541 -4.8217 11 14 3.3677 -0.8961 -6.2900 12 1 3.6495 -2.3165 -5.9612 13 1 2.3313 -0.8304 -7.3515 14 1 4.6114 -0.2428 -6.7713 15 6 2.0400 -0.7213 1.2493 16 1 3.1300 -0.7216 1.2490 17 6 1.5300 -2.1638 1.2492 18 6 1.5377 -0.0109 2.4797 19 8 0.8408 0.9754 2.3684 20 7 1.8637 -0.4711 3.7037 21 6 1.3980 0.1865 4.8435 22 7 0.6375 1.2612 4.7159 23 6 0.1757 1.9124 5.7665 24 6 0.4712 1.4927 7.0485 25 6 1.2658 0.3697 7.2305 26 6 1.7337 -0.2984 6.1074 27 8 2.5113 -1.4062 6.2373 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.2490 -1.6318 -1.1527 32 1 2.5296 1.7369 -5.6582 33 1 0.4400 -2.1638 1.2492 34 1 1.8933 -2.6776 0.3592 35 1 1.8937 -2.6777 2.1389 36 1 2.4214 -1.2598 3.7928 37 1 -0.4421 2.7862 5.6218 38 1 0.0874 2.0332 7.9012 39 1 1.5108 0.0210 8.2229 40 1 3.4591 -1.2189 6.2782 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515165201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:24 Heat of formation + Delta-G solvation = -99.359402 kcal Electronic energy + Delta-G solvation = -24970.882061 eV Core-core repulsion = 21171.195018 eV Total energy + Delta-G solvation = -3799.687043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.12039 -40.79060 -39.38898 -38.17674 -36.83835 -35.95785 -34.60426 -33.16344 -32.55022 -30.76366 -29.86070 -28.18005 -26.45371 -25.11108 -24.27915 -23.09993 -21.56079 -20.58228 -19.76494 -19.25096 -18.74704 -18.20367 -17.50962 -17.07669 -16.80287 -16.41790 -16.20771 -16.03809 -15.71001 -15.35227 -14.97212 -14.89580 -14.48359 -14.39978 -14.20279 -13.64998 -13.55075 -13.26336 -13.09244 -13.00188 -12.82495 -12.70874 -12.58233 -12.30640 -11.97372 -11.93129 -11.77879 -11.71880 -11.10150 -10.93604 -10.66546 -10.00329 -9.80083 -9.47804 -9.18866 -8.26718 -6.83483 -0.02306 0.27708 1.41089 1.41817 1.59560 1.60323 1.72868 2.26345 2.50179 2.77824 3.02803 3.11709 3.42425 3.55039 3.64788 3.84837 3.92690 3.98978 4.12832 4.22602 4.34625 4.45067 4.60280 4.65176 4.76406 4.91115 4.93750 4.99723 5.08290 5.12563 5.20207 5.29666 5.34263 5.41932 5.67189 5.90850 6.15151 6.28560 6.29632 6.68088 6.88858 6.95295 7.29538 7.60825 8.53850 8.71236 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.002753 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.154841 B =10168.484104 C =10651.694692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.175 3.825 3 H 0.031 0.969 4 N -0.744 5.744 5 C 0.537 3.463 6 O -0.633 6.633 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.024 3.976 10 N -0.826 5.826 11 Si 1.001 2.999 12 H -0.242 1.242 13 H -0.272 1.272 14 H -0.270 1.270 15 C -0.102 4.102 16 H 0.121 0.879 17 C -0.142 4.142 18 C 0.513 3.487 19 O -0.506 6.506 20 N -0.644 5.644 21 C 0.311 3.689 22 N -0.511 5.511 23 C 0.099 3.901 24 C -0.175 4.175 25 C -0.075 4.075 26 C 0.027 3.973 27 O -0.489 6.489 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.397 0.603 32 H 0.273 0.727 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.434 0.566 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 -9.467 26.171 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.068 3.932 3 H 0.050 0.950 4 N -0.400 5.400 5 C 0.342 3.658 6 O -0.520 6.520 7 C -0.606 4.606 8 H 0.110 0.890 9 C -0.190 4.190 10 N -0.455 5.455 11 Si 0.820 3.180 12 H -0.165 1.165 13 H -0.197 1.197 14 H -0.195 1.195 15 C -0.124 4.124 16 H 0.139 0.861 17 C -0.199 4.199 18 C 0.299 3.701 19 O -0.377 6.377 20 N -0.293 5.293 21 C 0.080 3.920 22 N -0.227 5.227 23 C -0.058 4.058 24 C -0.196 4.196 25 C -0.101 4.101 26 C -0.024 4.024 27 O -0.301 6.301 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.233 0.767 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.274 0.726 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.193 0.807 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 0.660 -7.809 25.033 26.231 hybrid contribution 0.997 -0.382 -0.168 1.080 sum 1.657 -8.191 24.865 26.231 Atomic orbital electron populations 1.22264 0.96548 1.01619 1.00857 1.20071 0.93564 0.95001 0.84544 0.95043 1.45834 1.72122 1.13398 1.08597 1.18680 0.77536 0.86053 0.83579 1.90574 1.56770 1.18938 1.85753 1.21463 1.47225 0.98330 0.93612 0.88975 1.27047 0.92827 0.95135 1.03989 1.70227 1.36853 1.10801 1.27650 0.84935 0.78004 0.79498 0.75586 1.16516 1.19675 1.19470 1.21460 1.03240 0.97803 0.89892 0.86070 1.21882 1.01934 0.91299 1.04794 1.21006 0.79962 0.84364 0.84770 1.90768 1.35255 1.25735 1.85970 1.43459 1.51624 1.31244 1.02951 1.19281 0.94954 0.91161 0.86649 1.67620 1.11428 1.07553 1.36141 1.23085 0.96386 0.98405 0.87891 1.22375 1.00265 0.98066 0.98848 1.22106 0.95379 0.93125 0.99467 1.18821 1.01621 0.91530 0.90389 1.84858 1.22865 1.27174 1.95161 0.91256 0.90825 0.96662 0.76737 0.91733 0.92313 0.90022 0.88581 0.72555 0.81297 0.80911 0.80708 0.73151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.58 8.81 71.98 0.63 -5.94 16 2 C 0.17 7.34 2.04 44.99 0.09 7.44 16 3 H 0.03 1.64 7.54 -2.39 -0.02 1.62 16 4 N -0.74 -33.72 4.99 -446.82 -2.23 -35.95 16 5 C 0.54 32.01 7.71 86.36 0.67 32.68 16 6 O -0.63 -44.53 14.68 -4.33 -0.06 -44.60 16 7 C -0.57 -32.54 9.54 24.83 0.24 -32.30 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.02 1.39 5.50 85.30 0.47 1.86 16 10 N -0.83 -52.15 11.83 21.84 0.26 -51.89 16 11 Si 1.00 41.43 29.56 68.60 2.03 43.46 16 12 H -0.24 -9.08 7.11 99.48 0.71 -8.38 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 14 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 15 C -0.10 -2.89 2.72 -11.54 -0.03 -2.92 16 16 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 17 C -0.14 -2.91 8.56 71.98 0.62 -2.29 16 18 C 0.51 15.66 6.83 87.65 0.60 16.25 16 19 O -0.51 -20.49 11.91 -3.02 -0.04 -20.53 16 20 N -0.64 -14.40 5.28 -308.03 -1.63 -16.03 16 21 C 0.31 7.51 7.45 132.98 0.99 8.50 16 22 N -0.51 -14.91 7.88 -192.59 -1.52 -16.43 16 23 C 0.10 2.06 11.17 84.64 0.95 3.01 16 24 C -0.17 -2.27 10.10 22.36 0.23 -2.04 16 25 C -0.07 -0.91 10.12 22.53 0.23 -0.68 16 26 C 0.03 0.44 6.75 22.70 0.15 0.59 16 27 O -0.49 -5.27 12.77 -93.29 -1.19 -6.46 16 28 H 0.07 2.51 6.43 -2.39 -0.02 2.49 16 29 H 0.07 3.15 5.51 -2.39 -0.01 3.14 16 30 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.40 14.71 6.85 -92.71 -0.63 14.07 16 32 H 0.27 15.60 8.29 -92.71 -0.77 14.83 16 33 H 0.06 1.34 6.43 -2.39 -0.02 1.32 16 34 H 0.08 1.60 6.51 -2.39 -0.02 1.58 16 35 H 0.10 1.23 7.57 -2.39 -0.02 1.21 16 36 H 0.43 6.17 7.46 -92.70 -0.69 5.48 16 37 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.41 0.62 9.06 -74.05 -0.67 -0.05 16 Total: -1.00 -94.83 337.48 0.57 -94.26 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.87 Total: 30.03 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 5.82 Total: 24.15 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -5.12 Total: -120.30 kcal Atomic # 8 Polarization: -70.30 SS G_CDS: -1.29 Total: -71.59 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -94.83 0.57 -94.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515165201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.103 kcal (2) G-P(sol) polarization free energy of solvation -94.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds