Wall clock time and date at job start Fri Apr 10 2020 14:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46793 * 2 1 4 4 C 1.52994 * 109.47253 * 239.99785 * 2 1 3 5 5 C 1.50704 * 109.47469 * 174.99734 * 4 2 1 6 6 N 1.34771 * 120.00201 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99483 * 0.02562 * 5 4 2 8 8 N 1.46504 * 109.47175 * 119.99956 * 2 1 3 9 9 C 1.34779 * 119.99867 * 275.00266 * 8 2 1 10 10 O 1.21586 * 119.99972 * 359.97438 * 9 8 2 11 11 N 1.34776 * 120.00057 * 179.97438 * 9 8 2 12 12 C 1.39938 * 120.00243 * 174.52606 * 11 9 8 13 13 C 1.38969 * 120.03307 * 325.03635 * 12 11 9 14 14 C 1.38151 * 120.06543 * 180.27553 * 13 12 11 15 15 C 1.38166 * 120.14493 * 0.02562 * 14 13 12 16 16 C 1.38912 * 120.06630 * 359.97438 * 15 14 13 17 17 O 1.35746 * 120.03729 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00459 * 185.67138 * 17 16 15 19 19 H 1.08004 * 120.00201 * 5.38091 * 18 17 16 20 20 C 1.38653 * 120.00158 * 185.38429 * 18 17 16 21 21 N 1.31556 * 119.99959 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99991 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47202 * 59.99484 * 22 20 18 24 24 H 1.48500 * 109.47079 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47230 * 299.99601 * 22 20 18 26 26 C 1.38704 * 120.04006 * 145.31920 * 12 11 9 27 27 H 1.09002 * 109.47221 * 300.00366 * 1 2 3 28 28 H 1.08996 * 109.46791 * 59.99940 * 1 2 3 29 29 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47654 * 295.00176 * 4 2 1 31 31 H 1.09003 * 109.47449 * 55.00376 * 4 2 1 32 32 H 0.96991 * 120.00440 * 0.02562 * 6 5 4 33 33 H 0.97007 * 119.99376 * 180.02562 * 6 5 4 34 34 H 0.96989 * 120.00018 * 94.99944 * 8 2 1 35 35 H 0.97007 * 119.99713 * 354.52350 * 11 9 8 36 36 H 1.07995 * 119.96307 * 0.28238 * 13 12 11 37 37 H 1.08002 * 119.92696 * 180.02562 * 14 13 12 38 38 H 1.07994 * 119.97113 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99657 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.06627 * 359.69559 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6149 -1.3127 6 7 4.2149 -1.1796 -2.3348 7 8 4.1451 -0.0210 -0.4440 8 7 2.0184 -0.6906 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.8583 1.1616 2.4116 11 7 2.5958 -0.6536 3.4578 12 6 2.8385 0.0676 4.6321 13 6 3.3288 1.3661 4.5622 14 6 3.5739 2.0767 5.7212 15 6 3.3332 1.4994 6.9532 16 6 2.8432 0.2018 7.0298 17 8 2.6074 -0.3651 8.2405 18 6 2.2450 -1.6637 8.2483 19 1 2.2382 -2.2280 7.3274 20 6 1.8810 -2.2748 9.4385 21 7 1.8897 -1.5876 10.5603 22 14 1.3783 -4.0739 9.4491 23 1 2.5024 -4.9049 8.9481 24 1 1.0388 -4.4848 10.8351 25 1 0.1945 -4.2622 8.5725 26 6 2.5954 -0.5146 5.8674 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7517 -1.7715 -1.2056 31 1 1.6055 -0.2618 -2.1370 32 1 3.7326 -1.6542 -3.0296 33 1 5.1817 -1.1114 -2.3754 34 1 2.2490 -1.6317 1.1527 35 1 2.7506 -1.6110 3.4358 36 1 3.5182 1.8200 3.6007 37 1 3.9546 3.0858 5.6642 38 1 3.5263 2.0573 7.8574 39 1 1.6355 -2.0153 11.3930 40 1 2.2141 -1.5235 5.9244 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743102479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:10 Heat of formation + Delta-G solvation = -100.668329 kcal Electronic energy + Delta-G solvation = -24607.109553 eV Core-core repulsion = 20807.365750 eV Total energy + Delta-G solvation = -3799.743802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73624 -40.72701 -40.19033 -38.33303 -36.71592 -35.59987 -34.59609 -34.22765 -32.55581 -30.82713 -29.89086 -28.88137 -27.28255 -24.35879 -23.48206 -22.72178 -21.75827 -21.26864 -20.12790 -19.43203 -19.06658 -18.18825 -17.64502 -17.32597 -16.87683 -16.75844 -16.35435 -15.92890 -15.88840 -15.54382 -15.44170 -15.32978 -14.95994 -14.57227 -14.23181 -13.89562 -13.63757 -13.48101 -13.15282 -12.95707 -12.82627 -12.73328 -12.59989 -12.45269 -12.13698 -11.96562 -11.48007 -11.30829 -11.07658 -10.97714 -10.71211 -10.57894 -10.09397 -9.31865 -8.83190 -8.44763 -6.13638 0.46232 0.71356 1.36428 1.47757 1.53311 1.61222 1.74453 2.14579 2.19795 2.66404 2.86225 3.18634 3.19681 3.50245 3.67626 4.03777 4.12152 4.26919 4.33646 4.45628 4.48840 4.63855 4.65874 4.73373 4.75257 4.83741 4.99944 5.08217 5.12451 5.35826 5.38312 5.50848 5.57167 5.68212 5.70862 5.95669 5.99590 6.03116 6.21794 6.56053 6.98853 7.00786 7.45800 7.53737 7.78938 8.78264 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.003064 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.267352 B = 9137.434390 C = 9858.978706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 H 0.058 0.942 4 C -0.138 4.138 5 C 0.502 3.498 6 N -0.841 5.841 7 O -0.590 6.590 8 N -0.713 5.713 9 C 0.705 3.295 10 O -0.613 6.613 11 N -0.677 5.677 12 C 0.208 3.792 13 C -0.201 4.201 14 C -0.051 4.051 15 C -0.215 4.215 16 C 0.137 3.863 17 O -0.225 6.225 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.260 4.260 27 H 0.029 0.971 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.419 0.581 33 H 0.402 0.598 34 H 0.407 0.593 35 H 0.417 0.583 36 H 0.120 0.880 37 H 0.152 0.848 38 H 0.121 0.879 39 H 0.273 0.727 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -5.689 -30.444 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.076 0.924 4 C -0.178 4.178 5 C 0.288 3.712 6 N -0.405 5.405 7 O -0.470 6.470 8 N -0.368 5.368 9 C 0.405 3.595 10 O -0.493 6.493 11 N -0.325 5.325 12 C 0.113 3.887 13 C -0.222 4.222 14 C -0.069 4.069 15 C -0.235 4.235 16 C 0.086 3.914 17 O -0.131 6.131 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.181 1.181 26 C -0.282 4.282 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.164 0.836 32 H 0.251 0.749 33 H 0.233 0.767 34 H 0.243 0.757 35 H 0.254 0.746 36 H 0.138 0.862 37 H 0.170 0.830 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.638 -4.182 -29.453 29.755 hybrid contribution 0.285 -1.457 0.230 1.503 sum -0.352 -5.639 -29.223 29.764 Atomic orbital electron populations 1.22169 0.93520 1.03459 1.02504 1.20662 0.94265 0.96455 0.82269 0.92407 1.22072 0.90408 1.05779 0.99575 1.21209 0.91699 0.77333 0.80949 1.43790 1.11850 1.57901 1.26915 1.90856 1.71595 1.44038 1.40529 1.44897 1.70537 1.13822 1.07576 1.16023 0.77678 0.84842 0.80947 1.90894 1.57490 1.16035 1.84848 1.42445 1.69057 1.11958 1.09088 1.17190 0.95075 0.92257 0.84222 1.20804 1.07491 0.95158 0.98776 1.20876 0.96316 0.99735 0.90015 1.20444 1.09963 0.94085 0.99015 1.19557 0.93285 0.93099 0.85503 1.83984 1.77019 1.27061 1.25059 1.21782 1.47040 0.83383 0.96849 0.88002 1.26620 0.96266 1.05685 0.93460 1.70188 1.46854 1.39359 0.99474 0.84639 0.79421 0.73795 0.78283 1.17909 1.19790 1.18129 1.20792 1.13582 1.03137 0.90676 0.95148 0.88960 0.90175 0.84509 0.83587 0.74915 0.76743 0.75678 0.74560 0.86210 0.83025 0.86066 0.91825 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.17 2.98 2.14 44.99 0.10 3.07 16 3 H 0.06 1.52 7.39 -2.38 -0.02 1.50 16 4 C -0.14 -0.94 5.24 29.85 0.16 -0.79 16 5 C 0.50 7.01 7.96 87.66 0.70 7.71 16 6 N -0.84 -4.59 8.87 -173.53 -1.54 -6.13 16 7 O -0.59 -16.22 16.19 -3.05 -0.05 -16.27 16 8 N -0.71 -15.60 4.22 -457.81 -1.93 -17.54 16 9 C 0.70 23.35 8.25 179.05 1.48 24.83 16 10 O -0.61 -25.63 13.80 -3.99 -0.06 -25.69 16 11 N -0.68 -22.35 5.34 -317.23 -1.69 -24.05 16 12 C 0.21 8.63 6.24 38.13 0.24 8.87 16 13 C -0.20 -8.43 8.66 22.42 0.19 -8.24 16 14 C -0.05 -2.05 10.03 22.23 0.22 -1.82 16 15 C -0.22 -9.95 9.99 22.41 0.22 -9.73 16 16 C 0.14 7.17 6.64 22.56 0.15 7.32 16 17 O -0.23 -13.81 9.76 -22.65 -0.22 -14.03 16 18 C -0.41 -24.27 9.44 67.92 0.64 -23.63 16 19 H 0.10 5.41 5.29 -2.91 -0.02 5.39 16 20 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 21 N -0.92 -56.98 13.67 21.61 0.30 -56.69 16 22 Si 1.02 42.56 29.55 68.60 2.03 44.58 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 26 C -0.26 -12.05 9.05 22.51 0.20 -11.84 16 27 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.42 -1.04 8.83 -92.71 -0.82 -1.86 16 33 H 0.40 2.52 8.93 -92.70 -0.83 1.69 16 34 H 0.41 6.16 8.62 -92.72 -0.80 5.36 16 35 H 0.42 10.65 8.84 -92.70 -0.82 9.83 16 36 H 0.12 5.10 6.53 -2.91 -0.02 5.08 16 37 H 0.15 4.91 8.06 -2.91 -0.02 4.88 16 38 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.13 5.86 5.71 -2.91 -0.02 5.85 16 Total: -1.00 -91.38 346.63 0.15 -91.23 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -2.13 Total: 31.28 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 5.45 Total: -6.71 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.87 Total: -104.40 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -0.33 Total: -55.98 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -91.38 0.15 -91.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743102479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.437 kcal (2) G-P(sol) polarization free energy of solvation -91.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds