Wall clock time and date at job start Fri Apr 10 2020 14:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47363 * 2 1 4 4 C 1.52998 * 109.47220 * 120.00802 * 2 1 3 5 5 C 1.50704 * 109.47009 * 184.99824 * 4 2 1 6 6 N 1.34773 * 119.99842 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99951 * 359.97438 * 5 4 2 8 8 N 1.46506 * 109.46776 * 240.00236 * 2 1 3 9 9 C 1.34778 * 119.99665 * 85.00372 * 8 2 1 10 10 O 1.21587 * 119.99998 * 0.26734 * 9 8 2 11 11 N 1.34779 * 119.99811 * 179.97438 * 9 8 2 12 12 C 1.39946 * 119.99600 * 174.82986 * 11 9 8 13 13 C 1.38951 * 120.03798 * 326.19270 * 12 11 9 14 14 C 1.38168 * 120.06655 * 179.71930 * 13 12 11 15 15 C 1.38173 * 120.13591 * 0.55753 * 14 13 12 16 16 C 1.38907 * 120.06813 * 359.71703 * 15 14 13 17 17 O 1.35753 * 120.03432 * 179.97438 * 16 15 14 18 18 C 1.34834 * 117.00120 * 185.92883 * 17 16 15 19 19 H 1.07999 * 119.99871 * 5.41972 * 18 17 16 20 20 C 1.38647 * 119.99688 * 185.41490 * 18 17 16 21 21 N 1.31559 * 120.00273 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99940 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47172 * 59.99423 * 22 20 18 24 24 H 1.48501 * 109.47097 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46632 * 300.00057 * 22 20 18 26 26 C 1.38709 * 120.03144 * 146.46572 * 12 11 9 27 27 H 1.08994 * 109.47121 * 59.99328 * 1 2 3 28 28 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46578 * 299.99820 * 1 2 3 30 30 H 1.09002 * 109.46632 * 304.99621 * 4 2 1 31 31 H 1.09000 * 109.47241 * 64.99657 * 4 2 1 32 32 H 0.97004 * 120.00558 * 359.97438 * 6 5 4 33 33 H 0.97004 * 120.00179 * 179.97438 * 6 5 4 34 34 H 0.96991 * 120.00118 * 265.00334 * 8 2 1 35 35 H 0.96997 * 119.99859 * 354.83252 * 11 9 8 36 36 H 1.07995 * 119.97101 * 359.97438 * 13 12 11 37 37 H 1.07997 * 119.93398 * 180.25219 * 14 13 12 38 38 H 1.07996 * 119.96301 * 179.70302 * 15 14 13 39 39 H 0.97005 * 119.99899 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.06996 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5420 -0.6151 1.3125 6 7 4.2149 -1.1799 2.3345 7 8 4.1451 -0.0212 0.4439 8 7 2.0183 -0.6906 -1.1963 9 6 2.1470 -0.0181 -2.3572 10 8 1.8625 1.1628 -2.4104 11 7 2.5967 -0.6533 -3.4576 12 6 2.6282 0.0144 -4.6871 13 6 1.6507 0.9531 -4.9940 14 6 1.6846 1.6170 -6.2053 15 6 2.6832 1.3414 -7.1197 16 6 3.6599 0.4000 -6.8210 17 8 4.6403 0.1295 -7.7201 18 6 5.4835 -0.8794 -7.4213 19 1 5.3096 -1.4871 -6.5456 20 6 6.5737 -1.1366 -8.2384 21 7 6.7858 -0.3961 -9.3049 22 14 7.7416 -2.5347 -7.8249 23 1 6.9931 -3.8172 -7.8110 24 1 8.8173 -2.5998 -8.8466 25 1 8.3431 -2.2981 -6.4879 26 6 3.6320 -0.2643 -5.6029 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6054 -0.2619 2.1369 31 1 1.7516 -1.7717 1.2054 32 1 3.7326 -1.6546 3.0295 33 1 5.1817 -1.1118 2.3752 34 1 2.2489 -1.6317 -1.1528 35 1 2.8984 -1.5732 -3.3973 36 1 0.8662 1.1671 -4.2834 37 1 0.9261 2.3491 -6.4400 38 1 2.7041 1.8585 -8.0676 39 1 7.5484 -0.5763 -9.8767 40 1 4.3905 -0.9964 -5.3683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743102482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:14 Heat of formation + Delta-G solvation = -67.933093 kcal Electronic energy + Delta-G solvation = -24642.847317 eV Core-core repulsion = 20844.523021 eV Total energy + Delta-G solvation = -3798.324296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48338 -39.65440 -38.62413 -36.71887 -35.55683 -34.05500 -33.99027 -32.18984 -31.50570 -29.09975 -28.37930 -28.12896 -25.22547 -23.13594 -21.70866 -21.63926 -20.55361 -20.32401 -18.60461 -17.79542 -17.73306 -17.18528 -16.92957 -16.26493 -15.35034 -15.22907 -14.85450 -14.70478 -14.52343 -14.11520 -14.03188 -13.84402 -13.46072 -13.26558 -12.86592 -12.73932 -12.49015 -12.23013 -12.13660 -11.67882 -11.44632 -11.24840 -11.04823 -10.86193 -10.72251 -10.41563 -10.23947 -10.02014 -9.86235 -9.53062 -9.35881 -9.04430 -8.72747 -7.58243 -7.02653 -6.37653 -3.97019 2.19375 2.34515 2.51306 2.80739 3.14552 3.15862 3.17963 3.20217 3.52062 4.02048 4.27419 4.32189 4.52159 4.71719 4.78731 5.03223 5.16857 5.18246 5.24016 5.37909 5.46109 5.75244 5.86095 6.02399 6.12148 6.20815 6.36649 6.39147 6.43062 6.53524 6.67482 6.91140 6.96803 7.11925 7.21147 7.40284 7.44487 7.53253 7.94411 7.96400 8.07068 8.18658 8.82705 9.07887 9.79736 10.80658 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.014410 B = 0.003455 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.602642 B = 8101.377481 C = 9710.849617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.097 0.903 4 C -0.152 4.152 5 C 0.507 3.493 6 N -0.861 5.861 7 O -0.520 6.520 8 N -0.734 5.734 9 C 0.711 3.289 10 O -0.570 6.570 11 N -0.683 5.683 12 C 0.203 3.797 13 C -0.205 4.205 14 C -0.063 4.063 15 C -0.204 4.204 16 C 0.169 3.831 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.089 0.911 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.939 3.061 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.258 4.258 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.399 0.601 33 H 0.401 0.599 34 H 0.391 0.609 35 H 0.400 0.600 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.270 0.730 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 -6.156 24.005 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.069 3.931 3 H 0.115 0.885 4 C -0.193 4.193 5 C 0.291 3.709 6 N -0.426 5.426 7 O -0.394 6.394 8 N -0.389 5.389 9 C 0.411 3.589 10 O -0.446 6.446 11 N -0.330 5.330 12 C 0.109 3.891 13 C -0.226 4.226 14 C -0.082 4.082 15 C -0.224 4.224 16 C 0.115 3.885 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.106 0.894 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.764 3.236 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.280 4.280 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.227 0.773 33 H 0.232 0.768 34 H 0.224 0.776 35 H 0.235 0.765 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.428 -4.518 22.929 25.591 hybrid contribution 1.198 -1.987 0.911 2.492 sum -9.231 -6.505 23.840 26.379 Atomic orbital electron populations 1.22225 0.94834 1.02157 1.03076 1.20481 0.93289 0.97884 0.81411 0.88464 1.22076 0.92581 1.03795 1.00829 1.20701 0.90511 0.78348 0.81371 1.43938 1.11662 1.59390 1.27605 1.90887 1.70141 1.40659 1.37704 1.44963 1.72043 1.13032 1.08876 1.15774 0.78181 0.84970 0.79939 1.90926 1.56079 1.13553 1.84054 1.42572 1.67519 1.16195 1.06687 1.17180 0.94085 0.94642 0.83237 1.20549 1.01001 1.02715 0.98296 1.20515 0.96983 0.97864 0.92808 1.20219 0.97190 1.03503 1.01506 1.19061 0.89183 0.92238 0.87973 1.84019 1.35820 1.48591 1.39698 1.21217 1.05842 1.07429 1.12212 0.89375 1.25253 0.96995 0.98800 0.95438 1.70031 1.28633 1.38010 1.13278 0.85819 0.79361 0.80012 0.78426 1.19588 1.20299 1.19613 1.20784 1.01450 1.09457 0.96337 0.91250 0.92477 0.91616 0.87213 0.88265 0.77305 0.76830 0.77644 0.76548 0.86279 0.86715 0.86480 0.92057 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.18 1.71 2.14 -67.93 -0.15 1.56 16 3 H 0.10 1.29 7.39 -51.93 -0.38 0.91 16 4 C -0.15 -0.85 5.24 -27.88 -0.15 -0.99 16 5 C 0.51 4.42 7.96 -10.99 -0.09 4.34 16 6 N -0.86 -4.15 8.87 31.22 0.28 -3.87 16 7 O -0.52 -7.74 16.19 5.56 0.09 -7.65 16 8 N -0.73 -8.59 4.22 -58.67 -0.25 -8.84 16 9 C 0.71 11.93 8.26 -86.92 -0.72 11.21 16 10 O -0.57 -11.75 13.73 5.29 0.07 -11.68 16 11 N -0.68 -11.53 5.35 -14.24 -0.08 -11.60 16 12 C 0.20 4.20 6.27 -83.71 -0.52 3.67 16 13 C -0.20 -4.21 8.65 -39.34 -0.34 -4.55 16 14 C -0.06 -1.26 10.03 -39.63 -0.40 -1.66 16 15 C -0.20 -4.62 9.99 -39.36 -0.39 -5.02 16 16 C 0.17 4.31 6.64 -39.14 -0.26 4.05 16 17 O -0.18 -5.24 9.76 0.03 0.00 -5.23 16 18 C -0.39 -11.20 9.44 30.88 0.29 -10.91 16 19 H 0.09 2.33 5.30 -52.49 -0.28 2.05 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 22 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 C -0.26 -5.96 9.04 -39.21 -0.35 -6.32 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.40 0.50 8.83 -40.82 -0.36 0.14 16 33 H 0.40 1.99 8.93 -40.82 -0.36 1.63 16 34 H 0.39 3.48 8.62 -40.82 -0.35 3.12 16 35 H 0.40 5.43 8.83 -40.82 -0.36 5.07 16 36 H 0.12 2.40 6.45 -52.49 -0.34 2.06 16 37 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 2.91 5.72 -52.49 -0.30 2.61 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -39.12 346.50 -6.58 -45.70 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.83 Total: 11.77 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.82 Total: -4.56 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.71 Total: -49.49 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.16 Total: -24.56 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -39.12 -6.58 -45.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743102482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.233 kcal (2) G-P(sol) polarization free energy of solvation -39.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds