Wall clock time and date at job start Fri Apr 10 2020 14:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47363 * 2 1 4 4 C 1.52998 * 109.47220 * 120.00802 * 2 1 3 5 5 C 1.50704 * 109.47009 * 184.99824 * 4 2 1 6 6 N 1.34773 * 119.99842 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99951 * 359.97438 * 5 4 2 8 8 N 1.46506 * 109.46776 * 240.00236 * 2 1 3 9 9 C 1.34778 * 119.99665 * 85.00372 * 8 2 1 10 10 O 1.21587 * 119.99998 * 0.26734 * 9 8 2 11 11 N 1.34779 * 119.99811 * 179.97438 * 9 8 2 12 12 C 1.39946 * 119.99600 * 174.82986 * 11 9 8 13 13 C 1.38951 * 120.03798 * 326.19270 * 12 11 9 14 14 C 1.38168 * 120.06655 * 179.71930 * 13 12 11 15 15 C 1.38173 * 120.13591 * 0.55753 * 14 13 12 16 16 C 1.38907 * 120.06813 * 359.71703 * 15 14 13 17 17 O 1.35753 * 120.03432 * 179.97438 * 16 15 14 18 18 C 1.34834 * 117.00120 * 185.92883 * 17 16 15 19 19 H 1.07999 * 119.99871 * 5.41972 * 18 17 16 20 20 C 1.38647 * 119.99688 * 185.41490 * 18 17 16 21 21 N 1.31559 * 120.00273 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99940 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47172 * 59.99423 * 22 20 18 24 24 H 1.48501 * 109.47097 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46632 * 300.00057 * 22 20 18 26 26 C 1.38709 * 120.03144 * 146.46572 * 12 11 9 27 27 H 1.08994 * 109.47121 * 59.99328 * 1 2 3 28 28 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46578 * 299.99820 * 1 2 3 30 30 H 1.09002 * 109.46632 * 304.99621 * 4 2 1 31 31 H 1.09000 * 109.47241 * 64.99657 * 4 2 1 32 32 H 0.97004 * 120.00558 * 359.97438 * 6 5 4 33 33 H 0.97004 * 120.00179 * 179.97438 * 6 5 4 34 34 H 0.96991 * 120.00118 * 265.00334 * 8 2 1 35 35 H 0.96997 * 119.99859 * 354.83252 * 11 9 8 36 36 H 1.07995 * 119.97101 * 359.97438 * 13 12 11 37 37 H 1.07997 * 119.93398 * 180.25219 * 14 13 12 38 38 H 1.07996 * 119.96301 * 179.70302 * 15 14 13 39 39 H 0.97005 * 119.99899 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.06996 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5420 -0.6151 1.3125 6 7 4.2149 -1.1799 2.3345 7 8 4.1451 -0.0212 0.4439 8 7 2.0183 -0.6906 -1.1963 9 6 2.1470 -0.0181 -2.3572 10 8 1.8625 1.1628 -2.4104 11 7 2.5967 -0.6533 -3.4576 12 6 2.6282 0.0144 -4.6871 13 6 1.6507 0.9531 -4.9940 14 6 1.6846 1.6170 -6.2053 15 6 2.6832 1.3414 -7.1197 16 6 3.6599 0.4000 -6.8210 17 8 4.6403 0.1295 -7.7201 18 6 5.4835 -0.8794 -7.4213 19 1 5.3096 -1.4871 -6.5456 20 6 6.5737 -1.1366 -8.2384 21 7 6.7858 -0.3961 -9.3049 22 14 7.7416 -2.5347 -7.8249 23 1 6.9931 -3.8172 -7.8110 24 1 8.8173 -2.5998 -8.8466 25 1 8.3431 -2.2981 -6.4879 26 6 3.6320 -0.2643 -5.6029 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6054 -0.2619 2.1369 31 1 1.7516 -1.7717 1.2054 32 1 3.7326 -1.6546 3.0295 33 1 5.1817 -1.1118 2.3752 34 1 2.2489 -1.6317 -1.1528 35 1 2.8984 -1.5732 -3.3973 36 1 0.8662 1.1671 -4.2834 37 1 0.9261 2.3491 -6.4400 38 1 2.7041 1.8585 -8.0676 39 1 7.5484 -0.5763 -9.8767 40 1 4.3905 -0.9964 -5.3683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743102482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:14 Heat of formation + Delta-G solvation = -100.937361 kcal Electronic energy + Delta-G solvation = -24644.278490 eV Core-core repulsion = 20844.523021 eV Total energy + Delta-G solvation = -3799.755469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74102 -40.73437 -40.20155 -38.33015 -36.71469 -35.59856 -34.61964 -34.23836 -32.55339 -30.82707 -29.88612 -28.87206 -27.29173 -24.35878 -23.48376 -22.71541 -21.76375 -21.27632 -20.13976 -19.41975 -19.07443 -18.20611 -17.64992 -17.32948 -16.86178 -16.72071 -16.44232 -15.90775 -15.88145 -15.54508 -15.48175 -15.33922 -14.94389 -14.57392 -14.24482 -13.94986 -13.60391 -13.38960 -13.21163 -12.95329 -12.80114 -12.75930 -12.60697 -12.46129 -12.14882 -11.95156 -11.48479 -11.31641 -11.06856 -10.99931 -10.72102 -10.59983 -10.09419 -9.31500 -8.82078 -8.46180 -6.14968 0.47255 0.72261 1.34403 1.45896 1.51207 1.59714 1.73041 2.15024 2.18292 2.65434 2.85884 3.18645 3.19198 3.50336 3.67484 4.03327 4.12615 4.27256 4.34351 4.46220 4.49984 4.64237 4.66556 4.73273 4.75357 4.85892 5.01030 5.09099 5.11432 5.37809 5.38330 5.51298 5.57537 5.68684 5.71061 5.93723 5.99467 6.02231 6.23041 6.54910 6.97644 7.00178 7.44687 7.53448 7.77867 8.76867 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.014410 B = 0.003455 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.602642 B = 8101.377481 C = 9710.849617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 H 0.055 0.945 4 C -0.138 4.138 5 C 0.501 3.499 6 N -0.841 5.841 7 O -0.593 6.593 8 N -0.713 5.713 9 C 0.705 3.295 10 O -0.613 6.613 11 N -0.677 5.677 12 C 0.207 3.793 13 C -0.199 4.199 14 C -0.050 4.050 15 C -0.217 4.217 16 C 0.136 3.864 17 O -0.226 6.226 18 C -0.415 4.415 19 H 0.101 0.899 20 C -0.022 4.022 21 N -0.920 5.920 22 Si 1.018 2.982 23 H -0.253 1.253 24 H -0.271 1.271 25 H -0.261 1.261 26 C -0.265 4.265 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.420 0.580 33 H 0.402 0.598 34 H 0.407 0.593 35 H 0.416 0.584 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.273 0.727 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 -8.291 27.590 31.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.062 3.938 3 H 0.073 0.927 4 C -0.178 4.178 5 C 0.286 3.714 6 N -0.405 5.405 7 O -0.473 6.473 8 N -0.368 5.368 9 C 0.405 3.595 10 O -0.492 6.492 11 N -0.325 5.325 12 C 0.112 3.888 13 C -0.220 4.220 14 C -0.068 4.068 15 C -0.237 4.237 16 C 0.085 3.915 17 O -0.132 6.132 18 C -0.491 4.491 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.558 5.558 22 Si 0.837 3.163 23 H -0.177 1.177 24 H -0.195 1.195 25 H -0.185 1.185 26 C -0.287 4.287 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.251 0.749 33 H 0.232 0.768 34 H 0.243 0.757 35 H 0.253 0.747 36 H 0.147 0.853 37 H 0.173 0.827 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.968 -6.735 26.654 29.984 hybrid contribution 1.444 -1.236 0.051 1.901 sum -10.524 -7.970 26.705 29.790 Atomic orbital electron populations 1.22150 0.93009 1.03575 1.02676 1.20684 0.94610 0.96304 0.82195 0.92700 1.22089 0.90101 1.05887 0.99736 1.21293 0.91876 0.77285 0.80900 1.43804 1.11844 1.57889 1.26938 1.90872 1.71697 1.44122 1.40645 1.44906 1.70428 1.13686 1.07797 1.16014 0.77927 0.84672 0.80867 1.90890 1.57932 1.15522 1.84849 1.42464 1.67546 1.16808 1.05674 1.17229 0.93082 0.94401 0.84127 1.20849 1.00776 1.01974 0.98418 1.20920 0.96592 0.97652 0.91664 1.20467 0.97411 1.03293 1.02483 1.19578 0.89368 0.93817 0.88746 1.83982 1.37492 1.49909 1.41811 1.21765 1.06339 1.08045 1.12957 0.88201 1.26596 0.98570 1.01839 0.94961 1.70183 1.29907 1.40718 1.15000 0.84661 0.76658 0.76448 0.78508 1.17718 1.19549 1.18549 1.20790 1.02147 1.09462 0.96259 0.94677 0.90032 0.89052 0.83534 0.84347 0.74858 0.76822 0.75702 0.74673 0.85293 0.82712 0.86102 0.91796 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 71.98 0.68 -1.36 16 2 C 0.17 2.93 2.14 44.99 0.10 3.03 16 3 H 0.05 1.47 7.39 -2.39 -0.02 1.45 16 4 C -0.14 -0.99 5.24 29.85 0.16 -0.83 16 5 C 0.50 7.63 7.96 87.66 0.70 8.33 16 6 N -0.84 -5.67 8.87 -173.54 -1.54 -7.21 16 7 O -0.59 -17.58 16.19 -3.03 -0.05 -17.63 16 8 N -0.71 -15.54 4.22 -457.80 -1.93 -17.47 16 9 C 0.70 23.24 8.26 179.05 1.48 24.72 16 10 O -0.61 -25.38 13.73 -3.99 -0.05 -25.43 16 11 N -0.68 -22.37 5.35 -317.23 -1.70 -24.07 16 12 C 0.21 8.56 6.27 38.13 0.24 8.80 16 13 C -0.20 -8.02 8.65 22.42 0.19 -7.83 16 14 C -0.05 -1.94 10.03 22.24 0.22 -1.72 16 15 C -0.22 -9.98 9.99 22.41 0.22 -9.76 16 16 C 0.14 7.20 6.64 22.56 0.15 7.35 16 17 O -0.23 -14.02 9.76 -22.81 -0.22 -14.24 16 18 C -0.42 -24.76 9.44 67.92 0.64 -24.12 16 19 H 0.10 5.45 5.30 -2.91 -0.02 5.44 16 20 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 21 N -0.92 -57.57 13.67 21.61 0.30 -57.27 16 22 Si 1.02 43.52 29.55 68.60 2.03 45.55 16 23 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 C -0.26 -12.50 9.04 22.51 0.20 -12.29 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.42 -0.66 8.83 -92.71 -0.82 -1.48 16 33 H 0.40 3.18 8.93 -92.71 -0.83 2.35 16 34 H 0.41 6.16 8.62 -92.72 -0.80 5.36 16 35 H 0.42 10.82 8.83 -92.71 -0.82 10.00 16 36 H 0.13 5.03 6.45 -2.91 -0.02 5.01 16 37 H 0.16 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.12 5.36 8.06 -2.91 -0.02 5.33 16 39 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 40 H 0.13 5.86 5.72 -2.91 -0.02 5.84 16 Total: -1.00 -93.01 346.50 0.15 -92.85 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -2.13 Total: 31.42 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.45 Total: -6.50 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -4.87 Total: -106.02 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -0.33 Total: -57.30 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -93.01 0.15 -92.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743102482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.082 kcal (2) G-P(sol) polarization free energy of solvation -93.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds