Wall clock time and date at job start Fri Apr 10 2020 14:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35913 * 117.00269 * 2 1 4 4 C 1.38807 * 120.43048 * 0.02562 * 3 2 1 5 5 N 1.31822 * 120.84564 * 180.02562 * 4 3 2 6 6 C 1.31804 * 121.85758 * 359.65384 * 5 4 3 7 7 C 1.38946 * 120.77293 * 0.63495 * 6 5 4 8 8 N 1.39751 * 120.45917 * 179.68213 * 7 6 5 9 9 C 1.34776 * 119.99754 * 214.68901 * 8 7 6 10 10 O 1.21389 * 119.99704 * 355.27714 * 9 8 7 11 11 C 1.49350 * 120.00265 * 175.27425 * 9 8 7 12 12 O 1.21357 * 119.99955 * 5.92703 * 11 9 8 13 13 N 1.34777 * 120.00212 * 185.92130 * 11 9 8 14 14 C 1.46505 * 119.99836 * 356.43144 * 13 11 9 15 15 C 1.46500 * 120.00345 * 176.42706 * 13 11 9 16 16 H 1.09003 * 109.46382 * 0.02562 * 15 13 11 17 17 C 1.53002 * 109.46985 * 119.99811 * 15 13 11 18 18 C 1.50692 * 109.47560 * 240.00342 * 15 13 11 19 19 H 1.08007 * 119.99698 * 0.02562 * 18 15 13 20 20 C 1.37870 * 120.00541 * 179.97438 * 18 15 13 21 21 N 1.31519 * 119.99436 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00396 * 179.97438 * 20 18 15 23 23 H 1.48509 * 109.47224 * 180.02562 * 22 20 18 24 24 H 1.48498 * 109.47377 * 300.00321 * 22 20 18 25 25 H 1.48497 * 109.46899 * 60.00598 * 22 20 18 26 26 C 1.38958 * 120.43311 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47099 * 59.99778 * 1 2 3 28 28 H 1.09002 * 109.47307 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47484 * 299.99994 * 1 2 3 30 30 H 1.07997 * 119.58247 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.61747 * 180.31460 * 6 5 4 32 32 H 0.96994 * 120.00044 * 34.68974 * 8 7 6 33 33 H 1.09003 * 109.47079 * 275.97781 * 14 13 11 34 34 H 1.09001 * 109.47075 * 35.97707 * 14 13 11 35 35 H 1.09007 * 109.46844 * 155.97775 * 14 13 11 36 36 H 1.08997 * 109.46493 * 60.00579 * 17 15 13 37 37 H 1.09004 * 109.46495 * 180.02562 * 17 15 13 38 38 H 1.08998 * 109.47433 * 300.00730 * 17 15 13 39 39 H 0.97004 * 119.99838 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.84315 * 0.04805 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2988 2.3808 0.0005 5 7 1.8888 3.5596 0.0000 6 6 3.2013 3.6807 0.0058 7 6 4.0189 2.5572 -0.0006 8 7 5.4097 2.6933 -0.0011 9 6 6.1732 1.8070 -0.6706 10 8 5.6604 0.8431 -1.2010 11 6 7.6500 2.0109 -0.7598 12 8 8.1765 2.9126 -0.1413 13 7 8.3981 1.1935 -1.5270 14 6 7.7749 0.0578 -2.2113 15 6 9.8343 1.4406 -1.6769 16 1 10.1135 2.3215 -1.0988 17 6 10.6162 0.2280 -1.1677 18 6 10.1554 1.6709 -3.1310 19 1 9.3683 1.6371 -3.8698 20 6 11.4538 1.9259 -3.5184 21 7 12.4122 1.9676 -2.6187 22 14 11.8519 2.2107 -5.3211 23 1 13.3078 2.4613 -5.4729 24 1 11.4722 1.0098 -6.1077 25 1 11.0925 3.3870 -5.8158 26 6 3.4331 1.2941 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2203 2.3246 0.0005 31 1 3.6465 4.6646 0.0103 32 1 5.8256 3.4255 0.4803 33 1 7.7120 -0.7886 -1.5272 34 1 6.7730 0.3359 -2.5383 35 1 8.3762 -0.2190 -3.0774 36 1 10.3369 -0.6530 -1.7454 37 1 11.6848 0.4121 -1.2788 38 1 10.3839 0.0614 -0.1159 39 1 13.3258 2.1466 -2.8912 40 1 4.0413 0.4016 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873823411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:03 Heat of formation + Delta-G solvation = -45.615653 kcal Electronic energy + Delta-G solvation = -24976.986217 eV Core-core repulsion = 21179.629677 eV Total energy + Delta-G solvation = -3797.356539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31258 -40.26883 -38.66190 -37.92742 -36.02066 -34.94548 -32.82220 -31.85781 -30.03606 -29.54453 -27.80097 -26.36083 -25.34973 -24.98121 -23.94130 -22.56212 -20.85997 -19.55808 -18.57409 -17.64103 -17.20421 -16.80014 -16.51641 -16.43631 -16.12698 -15.75546 -15.52634 -15.03888 -14.52319 -14.40362 -14.00318 -13.60941 -13.36270 -13.21762 -12.82471 -12.56993 -12.42785 -12.23547 -11.91002 -11.84321 -11.67294 -11.15792 -11.10058 -10.91663 -10.82360 -10.68511 -10.34838 -10.24209 -9.90173 -9.29745 -9.12559 -8.83137 -8.50648 -8.47128 -7.80802 -6.15936 -4.24840 0.71827 1.07268 1.77976 2.43388 2.91400 3.24901 3.29811 3.32025 3.46397 3.65813 3.91538 4.28193 4.33080 4.42324 4.67043 4.68527 4.73439 4.79360 4.89746 5.06941 5.15832 5.18465 5.62353 5.73261 5.94152 6.02906 6.15679 6.33662 6.57858 6.65363 6.70758 6.88897 6.93062 6.97870 7.18334 7.33411 7.60779 7.66632 7.74903 7.90705 8.03780 8.27902 8.51023 8.79985 9.41624 10.89482 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.025455 B = 0.002984 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.712813 B = 9381.011747 C = 9534.031302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.097 3.903 4 C -0.005 4.005 5 N -0.430 5.430 6 C 0.044 3.956 7 C 0.142 3.858 8 N -0.647 5.647 9 C 0.510 3.490 10 O -0.495 6.495 11 C 0.495 3.505 12 O -0.535 6.535 13 N -0.548 5.548 14 C 0.067 3.933 15 C 0.255 3.745 16 H 0.067 0.933 17 C -0.147 4.147 18 C -0.532 4.532 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.902 3.098 23 H -0.285 1.285 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.116 4.116 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.428 0.572 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.097 0.903 38 H 0.013 0.987 39 H 0.266 0.734 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.255 -2.210 5.844 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.049 3.951 4 C -0.163 4.163 5 N -0.138 5.138 6 C -0.117 4.117 7 C 0.044 3.956 8 N -0.295 5.295 9 C 0.294 3.706 10 O -0.368 6.368 11 C 0.275 3.725 12 O -0.414 6.414 13 N -0.278 5.278 14 C -0.076 4.076 15 C 0.156 3.844 16 H 0.085 0.915 17 C -0.205 4.205 18 C -0.570 4.570 19 H 0.080 0.920 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.729 3.271 23 H -0.211 1.211 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.145 4.145 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.176 0.824 31 H 0.181 0.819 32 H 0.267 0.733 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.115 0.885 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -20.449 -1.904 5.746 21.326 hybrid contribution 0.716 -0.237 -0.822 1.115 sum -19.733 -2.141 4.924 20.450 Atomic orbital electron populations 1.23135 0.77933 1.04416 1.01587 1.86111 1.21624 1.25927 1.88330 1.19876 0.92479 0.85723 0.96999 1.22841 1.00525 0.87142 1.05825 1.67507 1.10909 1.26185 1.09247 1.22569 0.88610 0.97833 1.02731 1.18569 0.83818 0.94034 0.99134 1.43217 1.03538 1.31727 1.50984 1.21117 0.89448 0.82285 0.77767 1.90668 1.74751 1.28178 1.43241 1.19483 0.85867 0.84356 0.82815 1.90731 1.72738 1.32515 1.45405 1.48295 1.11264 1.25717 1.42567 1.22202 0.99541 0.88088 0.97726 1.19191 0.71658 0.96128 0.97438 0.91521 1.22094 1.04655 0.97754 0.96021 1.21240 0.93813 1.50081 0.91872 0.92004 1.24880 0.95967 0.94697 0.98041 1.69866 1.00998 1.48268 1.33255 0.86495 0.77301 0.78859 0.84415 1.21082 1.20104 1.20143 1.21017 0.92048 0.98610 1.02775 0.92312 0.87859 0.92354 0.82420 0.81903 0.73305 0.93341 0.89321 0.90309 0.94790 0.88472 0.96768 0.92445 0.82260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.28 10.51 -19.47 -0.20 -3.48 16 3 C 0.10 1.14 6.71 -39.10 -0.26 0.88 16 4 C 0.00 -0.05 10.22 -17.35 -0.18 -0.23 16 5 N -0.43 -5.14 10.35 -12.94 -0.13 -5.27 16 6 C 0.04 0.50 11.12 -17.30 -0.19 0.31 16 7 C 0.14 1.81 6.32 -83.62 -0.53 1.28 16 8 N -0.65 -8.67 5.34 -10.21 -0.05 -8.72 16 9 C 0.51 8.46 7.63 -11.63 -0.09 8.37 16 10 O -0.49 -8.51 10.61 5.46 0.06 -8.45 16 11 C 0.49 9.95 7.73 -11.63 -0.09 9.86 16 12 O -0.53 -11.83 15.82 5.49 0.09 -11.74 16 13 N -0.55 -11.75 2.75 -175.80 -0.48 -12.24 16 14 C 0.07 1.24 8.49 59.85 0.51 1.75 16 15 C 0.26 6.35 2.63 -69.08 -0.18 6.17 16 16 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 17 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 18 C -0.53 -14.05 7.95 -34.45 -0.27 -14.32 16 19 H 0.06 1.62 7.44 -52.48 -0.39 1.23 16 20 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 21 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 22 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.12 -1.54 8.76 -38.94 -0.34 -1.89 16 27 H 0.06 0.29 7.68 -51.93 -0.40 -0.11 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.26 7.68 -51.93 -0.40 -0.13 16 30 H 0.16 1.19 6.31 -52.49 -0.33 0.86 16 31 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.43 4.99 8.30 -40.82 -0.34 4.65 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.58 5.36 -51.93 -0.28 1.30 16 35 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 36 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 37 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 38 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.16 2.31 6.32 -52.49 -0.33 1.97 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -30.81 336.82 -5.18 -35.99 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.73 Total: 5.05 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.40 Total: 11.91 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.04 Total: -49.98 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.81 -5.18 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873823411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.626 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds