Wall clock time and date at job start Fri Apr 10 2020 14:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34734 * 116.99901 * 2 1 4 4 O 1.21488 * 119.99806 * 359.97438 * 3 2 1 5 5 C 1.47577 * 119.99707 * 179.97438 * 3 2 1 6 6 C 1.41553 * 126.52425 * 179.97438 * 5 3 2 7 7 C 1.35339 * 105.50630 * 179.97438 * 6 5 3 8 8 C 1.50699 * 126.38156 * 179.97438 * 7 6 5 9 9 C 1.53953 * 113.73912 * 243.74049 * 8 7 6 10 10 N 1.47817 * 86.03523 * 222.08209 * 9 8 7 11 11 C 1.34777 * 134.45847 * 204.64347 * 10 9 8 12 12 O 1.21276 * 120.00199 * 174.65549 * 11 10 9 13 13 C 1.50698 * 119.99754 * 354.66027 * 11 10 9 14 14 H 1.09005 * 109.47329 * 33.56870 * 13 11 10 15 15 C 1.52996 * 109.47247 * 153.57065 * 13 11 10 16 16 C 1.50700 * 109.46992 * 273.57045 * 13 11 10 17 17 H 1.07999 * 120.00109 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99998 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99986 * 180.02562 * 18 16 13 20 20 Si 1.86796 * 119.99952 * 359.97438 * 18 16 13 21 21 H 1.48502 * 109.47104 * 90.00457 * 20 18 16 22 22 H 1.48497 * 109.47224 * 210.00371 * 20 18 16 23 23 H 1.48499 * 109.47458 * 330.00339 * 20 18 16 24 24 C 1.47582 * 91.05326 * 24.54815 * 10 9 8 25 25 N 1.35049 * 107.23984 * 0.02562 * 7 6 5 26 26 H 0.97003 * 124.87968 * 179.97438 * 25 7 6 27 27 N 1.28465 * 110.24447 * 359.97438 * 25 7 6 28 28 H 1.09004 * 109.47236 * 300.00206 * 1 2 3 29 29 H 1.09001 * 109.47543 * 60.00118 * 1 2 3 30 30 H 1.09006 * 109.47406 * 180.02562 * 1 2 3 31 31 H 1.08002 * 127.24668 * 0.24226 * 6 5 3 32 32 H 1.08997 * 112.94265 * 15.32925 * 8 7 6 33 33 H 1.09000 * 113.76917 * 336.34490 * 9 8 7 34 34 H 1.08997 * 113.76746 * 107.74953 * 9 8 7 35 35 H 1.09000 * 109.47477 * 66.41951 * 15 13 11 36 36 H 1.09002 * 109.47530 * 186.42413 * 15 13 11 37 37 H 1.09010 * 109.47208 * 306.42305 * 15 13 11 38 38 H 0.96994 * 119.99986 * 180.02562 * 19 18 16 39 39 H 1.08992 * 113.77221 * 221.15521 * 24 10 9 40 40 H 1.09002 * 113.86822 * 89.76518 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2193 -0.0005 5 6 3.5374 1.2777 0.0006 6 6 4.3192 2.4577 0.0001 7 6 5.6062 2.0390 0.0015 8 6 6.8315 2.9163 0.0012 9 6 7.6993 2.7684 -1.2619 10 7 8.8582 2.8003 -0.3449 11 6 10.1566 3.1370 -0.4759 12 8 10.8794 3.1562 0.4977 13 6 10.7103 3.4899 -1.8324 14 1 9.9402 3.9892 -2.4205 15 6 11.9107 4.4237 -1.6661 16 6 11.1461 2.2325 -2.5396 17 1 11.0338 1.2738 -2.0551 18 6 11.6892 2.3061 -3.8048 19 7 12.0691 1.2087 -4.4221 20 14 11.8841 3.9642 -4.6425 21 1 13.2139 4.5344 -4.3084 22 1 11.7750 3.7915 -6.1134 23 1 10.8183 4.8850 -4.1719 24 6 8.0225 2.3180 0.7718 25 7 5.5878 0.6887 0.0022 26 1 6.3759 0.1232 0.0028 27 7 4.3766 0.2606 0.0018 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9635 3.4775 0.0030 32 1 6.6133 3.9511 0.2650 33 1 7.5706 1.8149 -1.7742 34 1 7.6459 3.6246 -1.9342 35 1 12.7239 3.8867 -1.1779 36 1 12.2404 4.7697 -2.6458 37 1 11.6231 5.2802 -1.0562 38 1 12.4515 1.2605 -5.3120 39 1 8.2265 2.8153 1.7200 40 1 7.9879 1.2321 0.8598 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889959741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:35 Heat of formation + Delta-G solvation = -3.239887 kcal Electronic energy + Delta-G solvation = -24485.423618 eV Core-core repulsion = 20689.904630 eV Total energy + Delta-G solvation = -3795.518988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.10461 -40.38851 -39.85187 -37.49243 -36.67127 -33.88354 -32.35890 -32.00766 -31.25094 -28.71391 -28.02573 -26.31367 -25.18329 -24.63214 -23.59797 -21.82074 -21.26202 -20.32903 -18.45167 -18.09552 -17.42035 -16.98565 -16.80400 -16.75410 -16.44220 -15.80614 -15.49442 -15.19964 -14.41913 -14.09881 -13.97755 -13.54974 -13.49296 -13.01906 -12.97505 -12.76162 -12.43175 -12.34968 -12.22471 -11.98202 -11.69049 -11.29259 -11.14852 -11.07255 -11.03434 -10.99572 -10.82668 -10.26756 -9.78511 -9.73155 -9.34819 -9.24412 -8.87653 -8.74260 -8.39014 -6.25502 -4.28780 1.06015 1.69776 2.20004 2.71690 2.89875 3.09510 3.17892 3.25156 3.28946 3.45011 4.11751 4.23623 4.24639 4.35892 4.65125 4.80680 4.82056 4.89943 4.99473 5.06565 5.22200 5.24383 5.28101 5.33765 5.52140 5.60705 5.64281 5.96156 5.98721 6.05639 6.12704 6.25933 6.42009 6.54094 6.62014 6.74611 7.19328 7.34435 7.44438 7.64495 8.06417 8.27108 8.72291 8.88198 9.32482 10.86683 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.002824 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.526477 B = 9912.353032 C =10393.953357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.558 3.442 4 O -0.500 6.500 5 C -0.008 4.008 6 C -0.163 4.163 7 C 0.036 3.964 8 C -0.060 4.060 9 C 0.121 3.879 10 N -0.646 5.646 11 C 0.565 3.435 12 O -0.553 6.553 13 C 0.002 3.998 14 H 0.045 0.955 15 C -0.135 4.135 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.109 3.891 25 N -0.367 5.367 26 H 0.451 0.549 27 N -0.225 5.225 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.168 0.832 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.268 0.732 39 H 0.088 0.912 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.741 0.884 7.784 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.260 6.260 3 C 0.401 3.599 4 O -0.385 6.385 5 C -0.166 4.166 6 C -0.191 4.191 7 C -0.089 4.089 8 C -0.080 4.080 9 C -0.003 4.003 10 N -0.384 5.384 11 C 0.358 3.642 12 O -0.430 6.430 13 C -0.019 4.019 14 H 0.062 0.938 15 C -0.193 4.193 16 C -0.551 4.551 17 H 0.093 0.907 18 C -0.125 4.125 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.222 1.222 23 H -0.191 1.191 24 C -0.014 4.014 25 N -0.083 5.083 26 H 0.297 0.703 27 N -0.063 5.063 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.186 0.814 32 H 0.149 0.851 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.296 0.031 8.115 20.933 hybrid contribution 0.393 1.169 -0.642 1.390 sum -18.903 1.200 7.473 20.362 Atomic orbital electron populations 1.23329 0.75833 1.03937 1.02694 1.86648 1.23471 1.32001 1.83879 1.19572 0.86312 0.81636 0.72425 1.90867 1.65514 1.36085 1.46054 1.20656 0.90890 0.91335 1.13726 1.21465 0.89963 0.99448 1.08180 1.21138 0.96712 0.84511 1.06588 1.21982 0.87982 0.99232 0.98853 1.23177 0.80832 1.03380 0.92888 1.50042 1.08259 1.67922 1.12144 1.21063 0.77802 0.73541 0.91772 1.90584 1.56671 1.54205 1.41498 1.19287 0.94989 0.98057 0.89590 0.93758 1.21963 0.99868 0.97997 0.99465 1.20502 1.42736 0.91431 1.00455 0.90710 1.24919 0.94238 0.96651 0.96726 1.69863 1.41142 1.27518 1.14290 0.86810 0.79251 0.84247 0.77747 1.20214 1.22201 1.19066 1.23020 0.85982 0.98854 0.93588 1.43485 1.06876 1.06073 1.51908 0.70318 1.73746 0.89844 1.25989 1.16674 0.91725 0.91664 0.87847 0.81412 0.85105 0.89633 0.88933 0.91706 0.93914 0.94719 0.92218 0.89388 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.34 -3.75 10.58 -40.58 -0.43 -4.18 16 3 C 0.56 6.81 7.97 34.54 0.28 7.09 16 4 O -0.50 -6.80 16.72 -19.26 -0.32 -7.12 16 5 C -0.01 -0.10 7.17 -82.78 -0.59 -0.69 16 6 C -0.16 -1.68 10.73 -39.35 -0.42 -2.10 16 7 C 0.04 0.34 6.30 -82.21 -0.52 -0.17 16 8 C -0.06 -0.56 4.40 -90.84 -0.40 -0.96 16 9 C 0.12 1.51 8.00 -2.83 -0.02 1.48 16 10 N -0.65 -10.52 3.61 -178.19 -0.64 -11.16 16 11 C 0.56 12.09 7.08 -10.99 -0.08 12.02 16 12 O -0.55 -13.35 16.97 5.56 0.09 -13.26 16 13 C 0.00 0.05 2.05 -92.93 -0.19 -0.14 16 14 H 0.04 0.95 6.86 -51.93 -0.36 0.60 16 15 C -0.14 -2.99 8.03 37.16 0.30 -2.70 16 16 C -0.51 -13.77 9.13 -34.44 -0.31 -14.08 16 17 H 0.07 2.22 7.98 -52.49 -0.42 1.80 16 18 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 19 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 20 Si 0.89 20.75 24.31 -169.99 -4.13 16.62 16 21 H -0.28 -6.36 6.93 56.52 0.39 -5.97 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.27 -5.78 6.53 56.52 0.37 -5.41 16 24 C 0.11 1.28 8.39 -2.96 -0.02 1.26 16 25 N -0.37 -3.54 6.66 33.50 0.22 -3.31 16 26 H 0.45 3.44 8.09 -190.44 -1.54 1.90 16 27 N -0.22 -2.63 12.24 33.41 0.41 -2.22 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.06 1.51 8.06 -51.93 -0.42 1.09 16 36 H 0.04 0.94 3.47 -51.93 -0.18 0.75 16 37 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.74 7.10 -51.93 -0.37 0.37 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -34.77 343.76 -6.12 -40.89 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.26 Total: -0.53 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.02 Total: 4.35 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.76 Total: -41.95 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.66 Total: -24.56 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.13 Total: 16.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.77 -6.12 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889959741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.652 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds