Wall clock time and date at job start Fri Apr 10 2020 14:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47038 * 2 1 4 4 N 1.46502 * 109.47703 * 120.00694 * 2 1 3 5 5 C 1.34779 * 119.99706 * 274.99985 * 4 2 1 6 6 O 1.21609 * 119.99850 * 359.97438 * 5 4 2 7 7 C 1.47288 * 119.99601 * 179.97438 * 5 4 2 8 8 C 1.36568 * 125.80298 * 179.97438 * 7 5 4 9 9 C 1.40067 * 106.92796 * 180.02562 * 8 7 5 10 10 C 1.36569 * 106.92496 * 0.02562 * 9 8 7 11 11 C 1.47286 * 125.80563 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99694 * 179.97438 * 11 10 9 13 13 O 1.21613 * 120.00055 * 0.02562 * 11 10 9 14 14 O 1.34550 * 125.81011 * 0.31229 * 7 5 4 15 15 C 1.53007 * 109.46902 * 240.00654 * 2 1 3 16 16 C 1.53951 * 113.74025 * 158.73635 * 15 2 1 17 17 N 1.47814 * 86.03374 * 222.08382 * 16 15 2 18 18 C 1.36935 * 134.45464 * 204.64262 * 17 16 15 19 19 H 1.08002 * 120.00115 * 179.87261 * 18 17 16 20 20 C 1.38813 * 120.00229 * 359.86960 * 18 17 16 21 21 N 1.31621 * 119.99621 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00492 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46715 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47269 * 120.00024 * 22 20 18 25 25 H 1.48494 * 109.47556 * 240.00379 * 22 20 18 26 26 C 1.47576 * 91.05278 * 24.55093 * 17 16 15 27 27 H 1.09000 * 109.46938 * 299.98870 * 1 2 3 28 28 H 1.08998 * 109.47524 * 59.99657 * 1 2 3 29 29 H 1.09006 * 109.47038 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00165 * 94.99968 * 4 2 1 31 31 H 1.07999 * 126.53868 * 359.97008 * 8 7 5 32 32 H 1.08002 * 126.53614 * 179.97438 * 9 8 7 33 33 H 0.97001 * 120.00485 * 0.02562 * 12 11 10 34 34 H 0.97005 * 119.99790 * 179.72388 * 12 11 10 35 35 H 1.08994 * 112.94684 * 290.32907 * 15 2 1 36 36 H 1.09000 * 113.76925 * 336.34892 * 16 15 2 37 37 H 1.08998 * 113.76605 * 107.74858 * 16 15 2 38 38 H 0.97004 * 119.99755 * 180.02562 * 21 20 18 39 39 H 1.08997 * 113.77537 * 221.15017 * 26 17 16 40 40 H 1.09005 * 113.86947 * 89.76563 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3571 6 8 1.8583 1.1616 2.4117 7 6 2.6378 -0.7131 3.5597 8 6 2.8135 -0.1502 4.7915 9 6 3.2925 -1.1595 5.6364 10 6 3.3892 -2.2952 4.8841 11 6 3.8508 -3.6093 5.3630 12 7 3.8995 -4.6562 4.5156 13 8 4.1872 -3.7499 6.5232 14 8 2.9950 -2.0084 3.6300 15 6 2.0399 -0.7211 -1.2494 16 6 3.4847 -0.3518 -1.6319 17 7 2.9976 -0.3173 -3.0270 18 6 3.5872 -0.4752 -4.2528 19 1 2.9924 -0.4032 -5.1514 20 6 4.9493 -0.7278 -4.3406 21 7 5.6740 -0.8161 -3.2454 22 14 5.7535 -0.9439 -6.0127 23 1 4.7282 -0.7998 -7.0773 24 1 6.8036 0.0903 -6.1943 25 1 6.3679 -2.2932 -6.0959 26 6 1.6212 -0.0470 -2.5685 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.2492 -1.6318 1.1524 31 1 2.6210 0.8773 5.0624 32 1 3.5391 -1.0586 6.6831 33 1 3.6308 -4.5442 3.5903 34 1 4.2074 -5.5207 4.8300 35 1 1.8528 -1.7947 -1.2265 36 1 3.8046 0.6193 -1.2541 37 1 4.2070 -1.1445 -1.4370 38 1 6.6260 -0.9922 -3.3067 39 1 0.8584 -0.5966 -3.1199 40 1 1.3907 1.0135 -2.4661 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970104178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:06 Heat of formation + Delta-G solvation = -5.019503 kcal Electronic energy + Delta-G solvation = -24642.789069 eV Core-core repulsion = 20847.192911 eV Total energy + Delta-G solvation = -3795.596158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.10346 -39.89082 -39.46776 -38.11102 -35.06338 -34.28429 -33.34377 -32.30816 -31.15426 -29.83405 -27.57857 -25.46702 -24.65315 -23.93025 -22.53966 -21.54841 -20.98139 -20.40920 -19.53208 -18.74075 -17.74896 -17.22506 -16.91997 -16.78715 -16.22857 -15.17470 -15.05468 -14.91379 -14.61685 -14.42331 -13.92724 -13.64390 -13.52651 -13.40744 -13.38169 -13.12075 -12.50064 -12.22048 -11.74466 -11.43597 -11.35265 -10.98516 -10.94149 -10.78019 -10.45124 -10.43186 -10.32985 -10.21940 -9.90267 -9.83853 -9.47447 -9.19716 -8.91521 -8.83919 -6.91553 -5.80337 -3.12690 0.35019 1.63734 2.04878 2.75468 2.91560 3.01993 3.18929 3.36256 3.41769 3.44267 4.32540 4.41612 4.51538 4.65510 5.00824 5.17936 5.18294 5.20715 5.27007 5.47567 5.50189 5.56971 5.69101 5.85817 5.88551 5.93130 6.11867 6.17114 6.26473 6.32337 6.33570 6.47391 6.57432 6.68898 6.84050 7.18556 7.30506 7.41079 7.51766 7.67143 7.94405 7.99326 9.01154 9.67538 10.55924 11.36769 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.003192 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.067896 B = 8769.889170 C = 9969.997048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.092 0.908 4 N -0.701 5.701 5 C 0.598 3.402 6 O -0.514 6.514 7 C -0.028 4.028 8 C -0.140 4.140 9 C -0.126 4.126 10 C -0.058 4.058 11 C 0.611 3.389 12 N -0.840 5.840 13 O -0.520 6.520 14 O -0.152 6.152 15 C -0.147 4.147 16 C 0.169 3.831 17 N -0.613 5.613 18 C -0.223 4.223 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.131 3.869 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.405 0.595 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.089 0.911 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.253 0.747 39 H 0.045 0.955 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -5.026 15.693 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.110 0.890 4 N -0.350 5.350 5 C 0.383 3.617 6 O -0.392 6.392 7 C -0.082 4.082 8 C -0.160 4.160 9 C -0.147 4.147 10 C -0.112 4.112 11 C 0.395 3.605 12 N -0.403 5.403 13 O -0.397 6.397 14 O -0.047 6.047 15 C -0.168 4.168 16 C 0.044 3.956 17 N -0.339 5.339 18 C -0.351 4.351 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.004 3.996 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.240 0.760 31 H 0.188 0.812 32 H 0.186 0.814 33 H 0.240 0.760 34 H 0.243 0.757 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.975 -4.374 15.961 18.370 hybrid contribution 0.739 -0.665 -1.146 1.517 sum -7.236 -5.039 14.815 17.240 Atomic orbital electron populations 1.22144 0.95224 1.02008 1.02387 1.21251 0.93783 0.97721 0.82813 0.88990 1.46050 1.65335 1.14400 1.09255 1.16663 0.78217 0.85778 0.81091 1.90878 1.50621 1.13985 1.83683 1.22668 1.06181 0.81760 0.97597 1.21993 1.01398 1.01627 0.91019 1.21990 1.00469 0.90526 1.01664 1.22249 1.08899 0.96902 0.83122 1.16612 0.77124 0.81608 0.85129 1.43705 1.69062 1.12799 1.14749 1.90923 1.48921 1.83040 1.16830 1.84037 1.63673 1.27070 1.29965 1.23854 1.01054 0.99744 0.92101 1.22316 0.91287 0.98592 0.83392 1.45996 1.03271 1.82586 1.02009 1.19075 0.91461 1.41558 0.82963 0.90183 1.24783 0.96043 1.02341 0.97290 1.69826 1.06048 1.55234 1.25732 0.86056 0.79319 0.77393 0.83050 1.20451 1.21733 1.21702 1.22483 0.89716 0.96663 0.90690 0.92624 0.91054 0.92551 0.76020 0.81249 0.81383 0.76020 0.75687 0.89252 0.95542 0.90981 0.93705 0.93669 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.31 37.15 0.35 -1.58 16 2 C 0.15 2.11 2.38 -67.93 -0.16 1.95 16 3 H 0.09 1.51 7.41 -51.93 -0.39 1.12 16 4 N -0.70 -8.94 5.07 -54.92 -0.28 -9.22 16 5 C 0.60 8.24 7.77 -12.58 -0.10 8.14 16 6 O -0.51 -8.51 16.52 5.27 0.09 -8.43 16 7 C -0.03 -0.33 7.14 -36.51 -0.26 -0.59 16 8 C -0.14 -1.50 10.60 -39.50 -0.42 -1.92 16 9 C -0.13 -1.27 10.60 -39.50 -0.42 -1.69 16 10 C -0.06 -0.61 7.14 -36.51 -0.26 -0.87 16 11 C 0.61 6.19 8.08 -12.58 -0.10 6.09 16 12 N -0.84 -5.43 8.87 30.40 0.27 -5.16 16 13 O -0.52 -6.82 17.70 5.27 0.09 -6.73 16 14 O -0.15 -1.61 10.14 4.35 0.04 -1.56 16 15 C -0.15 -2.47 3.47 -89.69 -0.31 -2.78 16 16 C 0.17 3.80 7.08 -2.83 -0.02 3.78 16 17 N -0.61 -15.27 3.70 -177.70 -0.66 -15.92 16 18 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -26.94 11.39 55.49 0.63 -26.31 16 22 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.13 2.50 7.64 -2.97 -0.02 2.48 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.41 4.41 8.36 -40.82 -0.34 4.06 16 31 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.41 2.01 8.59 -40.82 -0.35 1.65 16 34 H 0.41 1.94 8.93 -40.82 -0.36 1.57 16 35 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 37 H 0.07 1.79 7.16 -51.93 -0.37 1.42 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -34.20 350.55 -6.66 -40.86 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.12 Total: 3.97 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -1.98 Total: 6.37 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.04 Total: -56.61 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.22 Total: -16.72 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.20 -6.66 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970104178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.837 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds