Wall clock time and date at job start Fri Apr 10 2020 14:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21680 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.46773 * 119.99866 * 180.02562 * 5 4 2 8 8 C 1.36055 * 125.65067 * 179.72178 * 7 5 4 9 9 C 1.41735 * 106.62453 * 179.85478 * 8 7 5 10 10 C 1.47487 * 126.77853 * 180.19071 * 9 8 7 11 11 N 1.34777 * 120.00209 * 180.28203 * 10 9 8 12 12 O 1.21593 * 119.99745 * 0.27608 * 10 9 8 13 13 C 1.37811 * 106.44901 * 0.40428 * 9 8 7 14 14 O 1.33495 * 108.34512 * 359.74776 * 13 9 8 15 15 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 16 16 C 1.53504 * 114.20785 * 300.00220 * 15 2 1 17 17 N 1.47069 * 87.98363 * 220.34571 * 16 15 2 18 18 C 1.36941 * 136.05552 * 207.07801 * 17 16 15 19 19 H 1.08000 * 119.99396 * 7.56018 * 18 17 16 20 20 C 1.38806 * 119.99993 * 187.55101 * 18 17 16 21 21 N 1.31621 * 119.99759 * 174.37714 * 20 18 17 22 22 Si 1.86799 * 119.99972 * 354.38427 * 20 18 17 23 23 H 1.48501 * 109.46963 * 174.94900 * 22 20 18 24 24 H 1.48498 * 109.47184 * 294.94894 * 22 20 18 25 25 H 1.48507 * 109.47082 * 54.95224 * 22 20 18 26 26 C 1.47064 * 87.88742 * 27.34488 * 17 16 15 27 27 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 28 28 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 30 30 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 31 31 H 1.08004 * 126.69235 * 359.97438 * 8 7 5 32 32 H 0.97004 * 119.99572 * 359.97438 * 11 10 9 33 33 H 0.96999 * 119.99887 * 180.02562 * 11 10 9 34 34 H 1.08005 * 125.83255 * 179.73021 * 13 9 8 35 35 H 1.09002 * 113.41395 * 73.19962 * 15 2 1 36 36 H 1.08997 * 113.46758 * 105.56146 * 16 15 2 37 37 H 1.09000 * 113.51898 * 335.13170 * 16 15 2 38 38 H 0.96993 * 120.00423 * 354.88754 * 21 20 18 39 39 H 1.08993 * 113.47012 * 87.43421 * 26 17 16 40 40 H 1.09000 * 113.46758 * 217.87997 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8580 1.1624 -2.4117 7 6 2.6359 -0.7104 -3.5556 8 6 2.8042 -0.1478 -4.7829 9 6 3.2937 -1.1702 -5.6339 10 6 3.6330 -1.0420 -7.0635 11 7 4.0852 -2.1117 -7.7473 12 8 3.5047 0.0288 -7.6251 13 6 3.3853 -2.3089 -4.8631 14 8 2.9871 -2.0109 -3.6243 15 6 2.0401 -0.7212 1.2493 16 6 1.5899 -0.0845 2.5715 17 7 2.9390 -0.3444 3.0960 18 6 3.4927 -0.5600 4.3298 19 1 2.8558 -0.6814 5.1935 20 6 4.8722 -0.6227 4.4701 21 7 5.4081 -0.7189 5.6684 22 14 5.9681 -0.5704 2.9583 23 1 7.3914 -0.5289 3.3799 24 1 5.7314 -1.7821 2.1331 25 1 5.6528 0.6416 2.1600 26 6 3.4330 -0.2640 1.7131 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.2491 -1.6318 -1.1525 31 1 2.6056 0.8783 -5.0552 32 1 4.1878 -2.9659 -7.2992 33 1 4.3087 -2.0273 -8.6874 34 1 3.7216 -3.2772 -5.2033 35 1 1.9119 -1.8028 1.2077 36 1 0.8095 -0.6492 3.0816 37 1 1.3545 0.9763 2.4855 38 1 4.8450 -0.6714 6.4568 39 1 3.6837 0.7494 1.3999 40 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970408357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:17 Heat of formation + Delta-G solvation = 1.658973 kcal Electronic energy + Delta-G solvation = -24548.625769 eV Core-core repulsion = 20753.319211 eV Total energy + Delta-G solvation = -3795.306558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.23776 -39.98604 -39.53504 -38.57227 -35.24503 -34.33961 -33.36805 -32.50184 -31.34491 -29.84004 -27.78774 -25.54637 -24.52587 -24.41441 -23.15709 -21.35686 -20.95630 -20.34601 -19.65301 -18.83250 -17.53641 -17.43893 -16.91812 -16.80971 -16.40262 -16.33734 -15.36258 -15.03922 -14.85265 -14.68785 -14.14204 -13.90277 -13.78917 -13.53637 -13.18985 -13.17969 -12.97830 -12.37179 -11.95406 -11.87607 -11.58635 -10.98936 -10.71686 -10.66849 -10.49328 -10.48817 -10.38624 -10.22390 -10.17698 -9.41933 -9.21074 -9.15940 -8.98200 -8.92414 -7.18913 -6.31308 -3.25578 0.55112 1.18099 2.14504 2.79733 2.83332 3.02471 3.13532 3.37805 3.43687 3.63113 4.01370 4.16586 4.48762 4.57815 4.66027 4.83645 5.00375 5.03812 5.11838 5.26396 5.37503 5.44637 5.50774 5.69664 5.74055 5.79959 5.94785 6.07334 6.18298 6.20397 6.23453 6.25564 6.26150 6.34656 6.47903 6.79280 6.86845 7.09506 7.32416 7.76402 7.92933 8.21719 8.95608 9.47914 10.34222 11.18606 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.003075 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.981288 B = 9102.628643 C =10011.878288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.094 0.906 4 N -0.707 5.707 5 C 0.601 3.399 6 O -0.515 6.515 7 C -0.071 4.071 8 C -0.071 4.071 9 C -0.244 4.244 10 C 0.594 3.406 11 N -0.851 5.851 12 O -0.533 6.533 13 C 0.044 3.956 14 O -0.148 6.148 15 C -0.140 4.140 16 C 0.135 3.865 17 N -0.629 5.629 18 C -0.304 4.304 19 H 0.083 0.917 20 C -0.025 4.025 21 N -0.934 5.934 22 Si 1.070 2.930 23 H -0.295 1.295 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.102 3.898 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.405 0.595 31 H 0.172 0.828 32 H 0.399 0.601 33 H 0.408 0.592 34 H 0.219 0.781 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.261 0.739 39 H 0.046 0.954 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 -7.493 -25.242 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.112 0.888 4 N -0.357 5.357 5 C 0.386 3.614 6 O -0.393 6.393 7 C -0.123 4.123 8 C -0.092 4.092 9 C -0.249 4.249 10 C 0.379 3.621 11 N -0.416 5.416 12 O -0.410 6.410 13 C -0.029 4.029 14 O -0.041 6.041 15 C -0.160 4.160 16 C 0.008 3.992 17 N -0.357 5.357 18 C -0.430 4.430 19 H 0.101 0.899 20 C -0.224 4.224 21 N -0.576 5.576 22 Si 0.903 3.097 23 H -0.222 1.222 24 H -0.222 1.222 25 H -0.214 1.214 26 C -0.024 4.024 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.240 0.760 31 H 0.189 0.811 32 H 0.228 0.772 33 H 0.239 0.761 34 H 0.236 0.764 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.272 -6.183 -25.380 26.649 hybrid contribution -1.236 -0.780 0.194 1.474 sum -6.508 -6.963 -25.186 26.929 Atomic orbital electron populations 1.22132 0.94796 1.02204 1.02611 1.21146 0.94210 0.97587 0.82445 0.88784 1.46045 1.65939 1.14396 1.09318 1.16520 0.78020 0.85786 0.81069 1.90908 1.50594 1.14013 1.83752 1.22154 1.10834 0.81788 0.97478 1.21862 0.96565 1.00979 0.89795 1.20627 1.13385 0.95129 0.95761 1.17225 0.76072 0.83840 0.84915 1.43656 1.70125 1.12573 1.15200 1.90866 1.53017 1.27184 1.69934 1.25038 0.97040 0.99562 0.81286 1.83959 1.62534 1.26882 1.30706 1.23583 0.99154 1.00355 0.92944 1.22255 0.90094 0.97202 0.89662 1.45973 1.04070 1.83719 1.01925 1.20157 0.92139 1.47656 0.83046 0.89912 1.25722 0.94251 0.99272 1.03162 1.70912 1.37311 1.52186 0.97197 0.83715 0.75770 0.76177 0.74056 1.22202 1.22192 1.21379 1.22849 0.94707 0.98568 0.86229 0.92366 0.92400 0.90947 0.76004 0.81089 0.77230 0.76070 0.76433 0.88268 0.93426 0.94207 0.92917 0.93658 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.29 37.16 0.35 -1.50 16 2 C 0.15 2.02 2.47 -67.93 -0.17 1.86 16 3 H 0.09 1.44 7.32 -51.93 -0.38 1.06 16 4 N -0.71 -8.51 5.07 -55.09 -0.28 -8.79 16 5 C 0.60 7.98 7.75 -12.81 -0.10 7.88 16 6 O -0.52 -8.44 16.51 5.21 0.09 -8.36 16 7 C -0.07 -0.79 7.09 -36.92 -0.26 -1.05 16 8 C -0.07 -0.79 10.41 -39.03 -0.41 -1.20 16 9 C -0.24 -2.12 6.16 -104.95 -0.65 -2.77 16 10 C 0.59 5.36 8.09 -12.49 -0.10 5.26 16 11 N -0.85 -3.37 8.86 30.45 0.27 -3.10 16 12 O -0.53 -7.31 17.77 5.28 0.09 -7.21 16 13 C 0.04 0.25 11.64 30.58 0.36 0.61 16 14 O -0.15 -1.25 10.33 6.19 0.06 -1.19 16 15 C -0.14 -2.22 3.67 -89.96 -0.33 -2.55 16 16 C 0.13 2.52 7.33 -8.50 -0.06 2.46 16 17 N -0.63 -15.29 3.69 -184.57 -0.68 -15.97 16 18 C -0.30 -8.75 11.08 -15.06 -0.17 -8.92 16 19 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 20 C -0.03 -0.76 5.50 -17.43 -0.10 -0.85 16 21 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 22 Si 1.07 26.92 25.16 -169.99 -4.28 22.64 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.29 -6.88 6.51 56.52 0.37 -6.51 16 25 H -0.29 -6.83 6.21 56.52 0.35 -6.48 16 26 C 0.10 2.10 5.27 -8.36 -0.04 2.06 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 30 H 0.41 4.04 8.34 -40.82 -0.34 3.70 16 31 H 0.17 2.03 8.06 -52.48 -0.42 1.60 16 32 H 0.40 0.17 7.78 -40.82 -0.32 -0.15 16 33 H 0.41 1.22 8.93 -40.82 -0.36 0.85 16 34 H 0.22 0.02 7.46 -52.48 -0.39 -0.37 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.26 8.14 8.73 -40.82 -0.36 7.79 16 39 H 0.05 0.95 7.44 -51.93 -0.39 0.57 16 40 H 0.05 1.10 4.73 -51.93 -0.25 0.85 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -38.38 341.69 -5.51 -43.88 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.01 Total: 0.49 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.68 Total: 1.28 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.07 Total: -56.68 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.24 Total: -16.76 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: -4.28 Total: 22.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.38 -5.51 -43.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970408357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.541 kcal (2) G-P(sol) polarization free energy of solvation -38.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds