Wall clock time and date at job start Fri Apr 10 2020 14:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21680 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.46773 * 119.99866 * 180.02562 * 5 4 2 8 8 C 1.36055 * 125.65067 * 179.72178 * 7 5 4 9 9 C 1.41735 * 106.62453 * 179.85478 * 8 7 5 10 10 C 1.47487 * 126.77853 * 180.19071 * 9 8 7 11 11 N 1.34777 * 120.00209 * 180.28203 * 10 9 8 12 12 O 1.21593 * 119.99745 * 0.27608 * 10 9 8 13 13 C 1.37811 * 106.44901 * 0.40428 * 9 8 7 14 14 O 1.33495 * 108.34512 * 359.74776 * 13 9 8 15 15 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 16 16 C 1.53504 * 114.20785 * 300.00220 * 15 2 1 17 17 N 1.47069 * 87.98363 * 220.34571 * 16 15 2 18 18 C 1.36941 * 136.05552 * 207.07801 * 17 16 15 19 19 H 1.08000 * 119.99396 * 7.56018 * 18 17 16 20 20 C 1.38806 * 119.99993 * 187.55101 * 18 17 16 21 21 N 1.31621 * 119.99759 * 174.37714 * 20 18 17 22 22 Si 1.86799 * 119.99972 * 354.38427 * 20 18 17 23 23 H 1.48501 * 109.46963 * 174.94900 * 22 20 18 24 24 H 1.48498 * 109.47184 * 294.94894 * 22 20 18 25 25 H 1.48507 * 109.47082 * 54.95224 * 22 20 18 26 26 C 1.47064 * 87.88742 * 27.34488 * 17 16 15 27 27 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 28 28 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 30 30 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 31 31 H 1.08004 * 126.69235 * 359.97438 * 8 7 5 32 32 H 0.97004 * 119.99572 * 359.97438 * 11 10 9 33 33 H 0.96999 * 119.99887 * 180.02562 * 11 10 9 34 34 H 1.08005 * 125.83255 * 179.73021 * 13 9 8 35 35 H 1.09002 * 113.41395 * 73.19962 * 15 2 1 36 36 H 1.08997 * 113.46758 * 105.56146 * 16 15 2 37 37 H 1.09000 * 113.51898 * 335.13170 * 16 15 2 38 38 H 0.96993 * 120.00423 * 354.88754 * 21 20 18 39 39 H 1.08993 * 113.47012 * 87.43421 * 26 17 16 40 40 H 1.09000 * 113.46758 * 217.87997 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8580 1.1624 -2.4117 7 6 2.6359 -0.7104 -3.5556 8 6 2.8042 -0.1478 -4.7829 9 6 3.2937 -1.1702 -5.6339 10 6 3.6330 -1.0420 -7.0635 11 7 4.0852 -2.1117 -7.7473 12 8 3.5047 0.0288 -7.6251 13 6 3.3853 -2.3089 -4.8631 14 8 2.9871 -2.0109 -3.6243 15 6 2.0401 -0.7212 1.2493 16 6 1.5899 -0.0845 2.5715 17 7 2.9390 -0.3444 3.0960 18 6 3.4927 -0.5600 4.3298 19 1 2.8558 -0.6814 5.1935 20 6 4.8722 -0.6227 4.4701 21 7 5.4081 -0.7189 5.6684 22 14 5.9681 -0.5704 2.9583 23 1 7.3914 -0.5289 3.3799 24 1 5.7314 -1.7821 2.1331 25 1 5.6528 0.6416 2.1600 26 6 3.4330 -0.2640 1.7131 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.2491 -1.6318 -1.1525 31 1 2.6056 0.8783 -5.0552 32 1 4.1878 -2.9659 -7.2992 33 1 4.3087 -2.0273 -8.6874 34 1 3.7216 -3.2772 -5.2033 35 1 1.9119 -1.8028 1.2077 36 1 0.8095 -0.6492 3.0816 37 1 1.3545 0.9763 2.4855 38 1 4.8450 -0.6714 6.4568 39 1 3.6837 0.7494 1.3999 40 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970408357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:16 Heat of formation + Delta-G solvation = -31.926916 kcal Electronic energy + Delta-G solvation = -24550.082162 eV Core-core repulsion = 20753.319211 eV Total energy + Delta-G solvation = -3796.762951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.91520 -41.15566 -40.24674 -39.95250 -36.46158 -34.97631 -34.55921 -34.01588 -32.48754 -30.71441 -29.47485 -27.09316 -25.69567 -25.07153 -24.48067 -22.44832 -22.03875 -21.40473 -20.72928 -19.75787 -19.54251 -18.08761 -17.68956 -17.58305 -17.32057 -17.15929 -16.99962 -16.03160 -15.93800 -15.75163 -15.51955 -15.16686 -15.05681 -14.77170 -14.43692 -14.25915 -13.75088 -13.67394 -13.31774 -13.24001 -13.13363 -12.56598 -12.36088 -12.13396 -11.74530 -11.51573 -11.39735 -11.24941 -11.23473 -11.09997 -10.85742 -10.73540 -10.28701 -9.82299 -9.23701 -8.62264 -5.48604 -0.10998 0.44014 1.36008 1.43957 1.47084 1.65598 1.94414 2.03289 2.27984 2.52594 2.53447 2.97424 3.17274 3.40790 3.44912 3.60198 3.82942 3.91868 4.19119 4.29287 4.35233 4.42810 4.47734 4.57704 4.66174 4.68609 4.73381 4.79259 4.85888 4.94702 5.01594 5.18525 5.28748 5.34596 5.47419 5.56965 5.85152 5.94449 6.39338 6.42775 6.69140 6.98483 7.28353 7.31807 8.26645 8.89307 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.003075 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.981288 B = 9102.628643 C =10011.878288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.075 0.925 4 N -0.698 5.698 5 C 0.602 3.398 6 O -0.557 6.557 7 C -0.089 4.089 8 C -0.083 4.083 9 C -0.272 4.272 10 C 0.592 3.408 11 N -0.823 5.823 12 O -0.594 6.594 13 C 0.097 3.903 14 O -0.144 6.144 15 C -0.102 4.102 16 C 0.131 3.869 17 N -0.663 5.663 18 C -0.289 4.289 19 H 0.053 0.947 20 C -0.087 4.087 21 N -0.972 5.972 22 Si 1.108 2.892 23 H -0.305 1.305 24 H -0.263 1.263 25 H -0.271 1.271 26 C 0.091 3.909 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.418 0.582 31 H 0.149 0.851 32 H 0.420 0.580 33 H 0.416 0.584 34 H 0.283 0.717 35 H 0.121 0.879 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.246 0.754 39 H 0.043 0.957 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -10.301 -28.110 30.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 H 0.093 0.907 4 N -0.348 5.348 5 C 0.388 3.612 6 O -0.437 6.437 7 C -0.140 4.140 8 C -0.105 4.105 9 C -0.277 4.277 10 C 0.378 3.622 11 N -0.388 5.388 12 O -0.476 6.476 13 C 0.023 3.977 14 O -0.037 6.037 15 C -0.122 4.122 16 C 0.005 3.995 17 N -0.391 5.391 18 C -0.417 4.417 19 H 0.070 0.930 20 C -0.279 4.279 21 N -0.617 5.617 22 Si 0.934 3.066 23 H -0.233 1.233 24 H -0.189 1.189 25 H -0.196 1.196 26 C -0.034 4.034 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.255 0.745 31 H 0.167 0.833 32 H 0.253 0.747 33 H 0.248 0.752 34 H 0.298 0.702 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.619 -9.077 -28.281 30.229 hybrid contribution -1.222 0.027 1.037 1.603 sum -6.841 -9.050 -27.244 29.512 Atomic orbital electron populations 1.22074 0.92939 1.03472 1.02616 1.20915 0.95493 0.96291 0.81954 0.90724 1.45878 1.65583 1.14871 1.08494 1.16704 0.77347 0.85379 0.81729 1.90884 1.52456 1.15861 1.84541 1.21517 1.13103 0.83038 0.96370 1.21881 0.96784 1.00949 0.90868 1.20627 1.15393 0.95731 0.95915 1.17353 0.75770 0.83946 0.85100 1.43420 1.67732 1.12192 1.15429 1.90842 1.56019 1.29687 1.71043 1.26184 0.91949 1.00374 0.79174 1.83978 1.62506 1.25225 1.31967 1.23262 0.95025 1.01393 0.92505 1.22488 0.87979 0.98234 0.90800 1.46121 1.07059 1.84163 1.01796 1.20043 0.91946 1.45285 0.84414 0.92956 1.27037 0.96276 0.99767 1.04798 1.71011 1.37417 1.55600 0.97669 0.83270 0.73461 0.78089 0.71751 1.23349 1.18914 1.19630 1.23052 0.97397 0.98596 0.84316 0.92833 0.90476 0.90550 0.74470 0.83278 0.74728 0.75186 0.70199 0.86117 0.92318 0.93187 0.94451 0.93929 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.29 71.98 0.67 -2.45 16 2 C 0.16 3.88 2.47 44.99 0.11 3.99 16 3 H 0.07 2.19 7.32 -2.39 -0.02 2.17 16 4 N -0.70 -15.00 5.07 -446.41 -2.26 -17.27 16 5 C 0.60 15.30 7.75 86.47 0.67 15.97 16 6 O -0.56 -18.41 16.51 -4.28 -0.07 -18.48 16 7 C -0.09 -1.84 7.09 24.00 0.17 -1.67 16 8 C -0.08 -1.84 10.41 22.63 0.24 -1.60 16 9 C -0.27 -4.07 6.16 -20.08 -0.12 -4.20 16 10 C 0.59 9.68 8.09 86.68 0.70 10.38 16 11 N -0.82 -3.70 8.86 -175.85 -1.56 -5.26 16 12 O -0.59 -16.51 17.77 -4.01 -0.07 -16.58 16 13 C 0.10 0.60 11.64 67.72 0.79 1.38 16 14 O -0.14 -1.86 10.33 -0.75 -0.01 -1.87 16 15 C -0.10 -2.92 3.67 -10.37 -0.04 -2.96 16 16 C 0.13 4.61 7.33 83.18 0.61 5.22 16 17 N -0.66 -31.50 3.69 -737.86 -2.72 -34.22 16 18 C -0.29 -16.87 11.08 84.03 0.93 -15.94 16 19 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 20 C -0.09 -5.26 5.50 84.86 0.47 -4.79 16 21 N -0.97 -63.38 13.70 21.65 0.30 -63.08 16 22 Si 1.11 53.89 25.16 68.60 1.73 55.62 16 23 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 24 H -0.26 -11.35 6.51 99.48 0.65 -10.70 16 25 H -0.27 -12.26 6.21 99.48 0.62 -11.64 16 26 C 0.09 3.55 5.27 83.27 0.44 3.99 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.29 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.50 7.48 -2.39 -0.02 1.49 16 30 H 0.42 6.78 8.34 -92.71 -0.77 6.01 16 31 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 32 H 0.42 -1.84 7.78 -92.71 -0.72 -2.56 16 33 H 0.42 1.27 8.93 -92.71 -0.83 0.45 16 34 H 0.28 -2.20 7.46 -2.91 -0.02 -2.22 16 35 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 39 H 0.04 1.71 7.44 -2.39 -0.02 1.69 16 40 H 0.05 1.99 4.73 -2.39 -0.01 1.98 16 Total: -1.00 -89.85 341.69 -0.43 -90.29 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -1.39 Total: 3.53 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.63 Total: 7.32 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -6.25 Total: -119.83 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.15 Total: -36.93 kcal Atomic # 14 Polarization: 53.89 SS G_CDS: 1.73 Total: 55.62 kcal Total: -89.85 -0.43 -90.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970408357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.358 kcal (2) G-P(sol) polarization free energy of solvation -89.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds