Wall clock time and date at job start Fri Apr 10 2020 14:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99760 * 2 1 4 4 H 1.48503 * 109.47013 * 275.00080 * 3 2 1 5 5 H 1.48490 * 109.47441 * 35.00242 * 3 2 1 6 6 H 1.48501 * 109.47282 * 155.00560 * 3 2 1 7 7 C 1.37879 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99836 * 175.13844 * 7 2 1 9 9 C 1.50701 * 119.99815 * 355.14266 * 7 2 1 10 10 C 1.53033 * 109.46139 * 185.45386 * 9 7 2 11 11 C 1.53190 * 109.31629 * 178.62794 * 10 9 7 12 12 N 1.46931 * 108.77362 * 54.63075 * 11 10 9 13 13 C 1.34779 * 120.62488 * 126.37481 * 12 11 10 14 14 O 1.21274 * 120.00343 * 4.79225 * 13 12 11 15 15 C 1.50705 * 119.99519 * 184.79414 * 13 12 11 16 16 H 1.09004 * 109.72717 * 325.44210 * 15 13 12 17 17 C 1.53448 * 109.70057 * 204.86144 * 15 13 12 18 18 C 1.52341 * 109.57221 * 126.10986 * 17 15 13 19 19 C 1.52955 * 110.20911 * 44.39911 * 18 17 15 20 20 C 1.53582 * 109.43303 * 78.32581 * 19 18 17 21 21 C 1.53368 * 108.08104 * 287.88296 * 20 19 18 22 22 C 1.50236 * 109.90072 * 316.59292 * 21 20 19 23 23 O 1.20769 * 120.12697 * 292.62520 * 22 21 20 24 24 C 1.51191 * 119.74065 * 112.60412 * 22 21 20 25 25 C 1.46922 * 118.73697 * 306.64534 * 12 11 10 26 26 C 1.52754 * 109.00962 * 53.31273 * 25 12 11 27 27 H 0.96993 * 120.00033 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.45480 * 305.42340 * 9 7 2 29 29 H 1.09002 * 109.50146 * 58.66816 * 10 9 7 30 30 H 1.09006 * 109.49555 * 298.57701 * 10 9 7 31 31 H 1.08993 * 109.58339 * 294.84320 * 11 10 9 32 32 H 1.08997 * 109.70551 * 174.49197 * 11 10 9 33 33 H 1.09007 * 109.44944 * 6.08184 * 17 15 13 34 34 H 1.09002 * 109.45660 * 246.14588 * 17 15 13 35 35 H 1.08997 * 109.34958 * 284.17385 * 18 17 15 36 36 H 1.08997 * 109.22634 * 164.54789 * 18 17 15 37 37 H 1.09004 * 109.47788 * 318.34123 * 19 18 17 38 38 H 1.08995 * 109.47602 * 198.31379 * 19 18 17 39 39 H 1.08996 * 109.73960 * 47.52709 * 20 19 18 40 40 H 1.09000 * 109.73471 * 168.23482 * 20 19 18 41 41 H 1.08990 * 109.40035 * 76.72717 * 21 20 19 42 42 H 1.09007 * 109.39515 * 196.46472 * 21 20 19 43 43 H 1.09002 * 109.91833 * 168.95653 * 24 22 21 44 44 H 1.09001 * 109.91876 * 47.79191 * 24 22 21 45 45 H 1.09004 * 109.58044 * 173.14852 * 25 12 11 46 46 H 1.08997 * 109.58692 * 293.56563 * 25 12 11 47 47 H 1.09007 * 109.56396 * 185.54941 * 26 25 12 48 48 H 1.08999 * 109.38830 * 65.51097 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1075 -1.3948 5 1 1.5035 2.6199 0.8030 6 1 3.5956 1.4121 0.5916 7 6 2.0046 -1.1940 -0.0005 8 1 3.0817 -1.1956 -0.0798 9 6 1.2552 -2.4969 0.1094 10 6 2.2534 -3.6513 0.2221 11 6 1.4883 -4.9704 0.3681 12 7 0.5443 -5.0958 -0.7509 13 6 0.5453 -6.1956 -1.5300 14 8 1.2693 -7.1301 -1.2590 15 6 -0.3532 -6.2640 -2.7380 16 1 -1.2860 -5.7387 -2.5328 17 6 -0.6496 -7.7303 -3.0798 18 6 -2.1563 -7.9421 -3.1553 19 6 -2.8118 -6.8016 -3.9357 20 6 -2.6051 -7.0274 -5.4407 21 6 -1.1309 -6.7556 -5.7647 22 6 -0.6716 -5.5141 -5.0543 23 8 -1.1176 -4.4363 -5.3675 24 6 0.3507 -5.6192 -3.9453 25 6 -0.3966 -3.9970 -1.0079 26 6 0.3860 -2.6914 -1.1351 27 1 -0.4850 0.8400 0.0004 28 1 0.6211 -2.4773 0.9958 29 1 2.8877 -3.5000 1.0956 30 1 2.8715 -3.6867 -0.6751 31 1 0.9404 -4.9726 1.3103 32 1 2.1886 -5.8054 0.3508 33 1 -0.2306 -8.3750 -2.3071 34 1 -0.1996 -7.9770 -4.0414 35 1 -2.5677 -7.9725 -2.1464 36 1 -2.3611 -8.8877 -3.6574 37 1 -2.3581 -5.8542 -3.6447 38 1 -3.8789 -6.7767 -3.7152 39 1 -2.8543 -8.0573 -5.6961 40 1 -3.2384 -6.3436 -6.0059 41 1 -0.5267 -7.6028 -5.4404 42 1 -1.0155 -6.6209 -6.8403 43 1 0.7118 -4.6262 -3.6778 44 1 1.1840 -6.2441 -4.2665 45 1 -0.9379 -4.1888 -1.9344 46 1 -1.1013 -3.9183 -0.1802 47 1 -0.3090 -1.8568 -1.2276 48 1 1.0217 -2.7352 -2.0195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336099655.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:10 Heat of formation + Delta-G solvation = -87.261732 kcal Electronic energy + Delta-G solvation = -27205.718734 eV Core-core repulsion = 23645.929723 eV Total energy + Delta-G solvation = -3559.789011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93729 -39.40674 -37.28389 -36.56115 -33.69931 -33.30338 -31.44077 -31.11361 -30.13743 -27.24569 -26.64698 -25.52074 -23.17370 -22.58883 -21.96056 -20.93823 -19.58667 -19.08850 -18.18181 -17.38947 -16.34563 -15.96711 -15.84030 -15.62180 -15.17187 -14.94532 -14.55423 -14.32006 -14.03722 -13.73694 -13.47660 -13.13127 -12.94487 -12.76120 -12.50572 -12.42727 -12.27835 -12.12376 -11.82674 -11.70876 -11.58494 -11.34112 -11.21682 -10.95553 -10.81742 -10.65717 -10.51419 -10.38410 -10.17274 -10.12738 -9.81964 -9.61910 -9.25165 -9.18972 -8.92313 -8.40293 -8.03674 -6.04476 -4.09708 1.83868 2.89076 3.28227 3.35913 3.38814 3.40215 3.93524 4.40991 4.41365 4.55551 4.65416 4.70826 4.76441 4.91318 4.98966 5.06684 5.12527 5.26261 5.31680 5.40225 5.44756 5.57035 5.61466 5.73697 5.74620 5.78091 5.82227 5.86003 5.90736 5.98737 6.04506 6.09380 6.11838 6.15345 6.26320 6.29070 6.42754 6.62107 6.85719 7.01146 7.10672 7.25130 7.43051 7.64605 7.87891 7.89318 8.00619 8.38857 8.49065 8.94107 9.55636 11.02014 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.004080 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.493597 B = 6861.705522 C = 7737.660668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.596 5.596 13 C 0.517 3.483 14 O -0.556 6.556 15 C -0.108 4.108 16 H 0.106 0.894 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.142 4.142 20 C -0.105 4.105 21 C -0.181 4.181 22 C 0.367 3.633 23 O -0.450 6.450 24 C -0.161 4.161 25 C 0.100 3.900 26 C -0.121 4.121 27 H 0.260 0.740 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -15.618 -8.546 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.328 5.328 13 C 0.305 3.695 14 O -0.435 6.435 15 C -0.129 4.129 16 H 0.124 0.876 17 C -0.160 4.160 18 C -0.157 4.157 19 C -0.180 4.180 20 C -0.142 4.142 21 C -0.218 4.218 22 C 0.241 3.759 23 O -0.323 6.323 24 C -0.199 4.199 25 C -0.022 4.022 26 C -0.160 4.160 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.118 0.882 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.346 -15.381 -8.542 18.388 hybrid contribution 0.477 1.092 0.018 1.192 sum -4.868 -14.289 -8.524 17.336 Atomic orbital electron populations 1.69862 1.05877 1.26535 1.50620 1.24957 0.94837 0.99056 0.94999 0.86623 0.80018 0.83670 0.77970 1.20802 1.21188 1.19906 1.21178 0.93191 0.90579 1.50243 0.92715 1.18647 0.92637 0.91679 0.94025 1.22014 0.98950 0.94199 1.00975 1.21718 0.91924 0.99515 0.87926 1.48246 1.36226 1.17739 1.30573 1.20320 0.83321 0.82101 0.83760 1.90618 1.43167 1.36850 1.72879 1.21723 0.99569 0.98810 0.92799 0.87601 1.21927 0.96251 0.94300 1.03560 1.21536 0.95208 0.98446 1.00548 1.22119 1.01380 0.99524 0.94927 1.21632 0.93875 1.02277 0.96465 1.22413 0.99124 0.98403 1.01863 1.24494 0.79757 0.89821 0.81782 1.90451 1.50130 1.31103 1.60585 1.22552 0.98677 1.04507 0.94211 1.22031 0.91757 0.88144 1.00287 1.21935 0.99931 0.94240 0.99854 0.92964 0.95225 0.92035 0.93034 0.92185 0.90366 0.89578 0.90311 0.91787 0.91316 0.91051 0.91341 0.90609 0.91208 0.88559 0.89133 0.88284 0.88033 0.91451 0.91811 0.88156 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 11.53 55.43 0.64 -23.92 16 2 C 0.06 1.69 5.36 -17.82 -0.10 1.60 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.66 8.49 -34.44 -0.29 -13.95 16 8 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 9 C 0.05 1.15 2.01 -91.73 -0.18 0.96 16 10 C -0.12 -2.49 5.30 -26.62 -0.14 -2.63 16 11 C 0.11 2.00 6.42 -3.71 -0.02 1.97 16 12 N -0.60 -10.41 2.98 -173.04 -0.52 -10.93 16 13 C 0.52 8.48 6.80 -10.98 -0.07 8.41 16 14 O -0.56 -10.39 15.00 5.56 0.08 -10.30 16 15 C -0.11 -1.37 1.30 -91.06 -0.12 -1.49 16 16 H 0.11 1.34 3.68 -51.93 -0.19 1.15 16 17 C -0.12 -1.28 4.94 -26.84 -0.13 -1.41 16 18 C -0.12 -1.04 5.62 -27.09 -0.15 -1.19 16 19 C -0.14 -1.29 5.42 -26.45 -0.14 -1.44 16 20 C -0.10 -0.84 5.94 -26.24 -0.16 -1.00 16 21 C -0.18 -1.54 5.42 -27.92 -0.15 -1.69 16 22 C 0.37 4.42 4.29 -29.02 -0.12 4.29 16 23 O -0.45 -7.13 17.82 5.99 0.11 -7.02 16 24 C -0.16 -2.01 5.03 -27.17 -0.14 -2.14 16 25 C 0.10 1.78 6.24 -3.94 -0.02 1.75 16 26 C -0.12 -2.66 5.18 -26.84 -0.14 -2.79 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.39 7.03 -51.93 -0.37 1.02 16 33 H 0.09 1.05 6.72 -51.92 -0.35 0.70 16 34 H 0.08 0.69 4.50 -51.93 -0.23 0.46 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.49 7.83 -51.93 -0.41 0.08 16 37 H 0.07 0.79 3.82 -51.93 -0.20 0.59 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.67 5.20 -51.93 -0.27 0.40 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 1.45 8.13 -51.93 -0.42 1.03 16 44 H 0.10 1.10 7.97 -51.93 -0.41 0.69 16 45 H 0.07 1.07 5.41 -51.93 -0.28 0.79 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.10 2.48 6.30 -51.93 -0.33 2.15 16 48 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -30.08 353.91 -9.10 -39.18 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.64 Total: 2.48 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.09 Total: -10.75 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.12 Total: -34.85 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.19 Total: -17.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.08 -9.10 -39.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336099655.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.079 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds