Wall clock time and date at job start Fri Apr 10 2020 14:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00397 * 2 1 4 4 H 1.48503 * 109.46897 * 270.00218 * 3 2 1 5 5 H 1.48498 * 109.46803 * 29.99802 * 3 2 1 6 6 H 1.48498 * 109.47061 * 150.00090 * 3 2 1 7 7 C 1.37875 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00300 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00133 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99755 * 170.00384 * 10 9 7 12 12 C 1.53234 * 109.33820 * 187.25899 * 11 10 9 13 13 N 1.47082 * 108.52199 * 306.16619 * 12 11 10 14 14 C 1.34773 * 120.88519 * 231.19028 * 13 12 11 15 15 O 1.21283 * 119.99840 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00421 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.55060 * 34.30713 * 16 14 13 18 18 C 1.53046 * 117.52580 * 248.58292 * 16 14 13 19 19 C 1.52758 * 117.50485 * 180.02562 * 16 14 13 20 20 C 1.53239 * 117.77818 * 215.18146 * 19 16 14 21 21 C 1.53330 * 108.50558 * 197.18744 * 20 19 16 22 22 C 1.53004 * 109.24226 * 305.68712 * 21 20 19 23 23 N 1.46902 * 109.83855 * 62.22348 * 22 21 20 24 24 C 1.47048 * 111.23559 * 295.25280 * 23 22 21 25 25 C 1.47080 * 118.23605 * 51.45870 * 13 12 11 26 26 C 1.46892 * 111.00536 * 294.30414 * 10 9 7 27 27 H 0.97007 * 119.99597 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46728 * 60.00261 * 9 7 2 29 29 H 1.08991 * 109.47345 * 300.00568 * 9 7 2 30 30 H 1.08999 * 109.49524 * 67.29280 * 11 10 9 31 31 H 1.09005 * 109.49095 * 307.21459 * 11 10 9 32 32 H 1.09007 * 109.62662 * 186.45918 * 12 11 10 33 33 H 1.08997 * 109.63477 * 65.88103 * 12 11 10 34 34 H 1.08994 * 117.50468 * 145.06322 * 18 16 14 35 35 H 1.09001 * 117.50823 * 359.97438 * 18 16 14 36 36 H 1.08994 * 109.63148 * 77.47938 * 20 19 16 37 37 H 1.09001 * 109.62595 * 316.89289 * 20 19 16 38 38 H 1.09002 * 109.51943 * 65.63521 * 21 20 19 39 39 H 1.09001 * 109.51637 * 185.74725 * 21 20 19 40 40 H 1.08994 * 109.39687 * 182.40857 * 22 21 20 41 41 H 1.08997 * 109.39879 * 302.15400 * 22 21 20 42 42 H 1.00905 * 110.98099 * 59.35910 * 23 22 21 43 43 H 1.09003 * 109.56706 * 298.25603 * 24 23 22 44 44 H 1.08996 * 109.66351 * 177.95831 * 24 23 22 45 45 H 1.08997 * 109.62729 * 68.25555 * 25 13 12 46 46 H 1.08995 * 109.63227 * 188.83196 * 25 13 12 47 47 H 1.09001 * 109.49307 * 292.70901 * 26 10 9 48 48 H 1.09007 * 109.49221 * 52.78356 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5792 0.0013 11 6 5.4499 -2.6256 -0.2373 12 6 5.8894 -4.0835 -0.4087 13 7 5.4262 -4.8514 0.7571 14 6 6.2764 -5.6305 1.4545 15 8 7.4407 -5.7057 1.1230 16 6 5.7806 -6.4084 2.6462 17 1 4.7582 -6.7791 2.5734 18 6 6.2804 -5.9803 4.0280 19 6 6.7931 -7.2727 3.3954 20 6 6.3019 -8.5989 3.9855 21 6 7.3208 -9.0749 5.0278 22 6 8.7081 -9.1361 4.3855 23 7 9.1147 -7.7939 3.9483 24 6 8.2357 -7.2921 2.8815 25 6 4.0091 -4.7511 1.1380 26 6 3.6449 -3.2623 1.2520 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6798 0.8895 29 1 3.8745 -0.6809 -0.8904 30 1 5.9726 -2.1855 0.6119 31 1 5.6877 -2.0653 -1.1415 32 1 6.9765 -4.1333 -0.4715 33 1 5.4483 -4.4947 -1.3167 34 1 5.5869 -6.0696 4.8641 35 1 6.9684 -5.1361 4.0753 36 1 6.2142 -9.3421 3.1930 37 1 5.3326 -8.4511 4.4617 38 1 7.3376 -8.3776 5.8654 39 1 7.0407 -10.0660 5.3846 40 1 9.4269 -9.5149 5.1119 41 1 8.6793 -9.8037 3.5244 42 1 9.1406 -7.1526 4.7270 43 1 8.3050 -7.9473 2.0131 44 1 8.5373 -6.2826 2.6022 45 1 3.3907 -5.2252 0.3759 46 1 3.8524 -5.2424 2.0983 47 1 4.1928 -2.8134 2.0805 48 1 2.5736 -3.1637 1.4280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601851367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:40 Heat of formation + Delta-G solvation = 4.597841 kcal Electronic energy + Delta-G solvation = -26145.895685 eV Core-core repulsion = 22622.382755 eV Total energy + Delta-G solvation = -3523.512930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79051 -39.07712 -37.50392 -35.36901 -34.52507 -32.44082 -31.82952 -30.94040 -28.92736 -27.93085 -25.99208 -24.28892 -23.91543 -23.16746 -22.35163 -21.47872 -20.41543 -19.31463 -18.47200 -17.35176 -16.87462 -16.10956 -15.91445 -15.28891 -14.97035 -14.86422 -14.70594 -14.59986 -14.35926 -13.99150 -13.75841 -13.60940 -13.13365 -12.83478 -12.70838 -12.61666 -12.44793 -12.19429 -12.13206 -11.64314 -11.58163 -11.52878 -11.26539 -11.20932 -11.11718 -10.82304 -10.62382 -10.36827 -10.26059 -10.06672 -9.94705 -9.45891 -9.38622 -8.64470 -8.56653 -8.50577 -7.50951 -6.12933 -4.11058 2.46039 2.97317 3.23294 3.31171 3.32747 3.54934 4.15599 4.27215 4.35348 4.42033 4.50277 4.59640 4.67558 4.74180 4.81198 4.94085 5.16122 5.18477 5.21394 5.30401 5.31668 5.33168 5.43741 5.47098 5.54034 5.58841 5.66700 5.68147 5.71460 5.76393 5.77966 5.83849 5.90927 5.94003 6.12936 6.29069 6.32307 6.38750 6.57543 6.76096 6.85636 6.88457 7.21844 7.47374 7.49352 7.77427 7.90740 8.22735 8.55585 8.93903 9.48588 10.99854 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.030083 B = 0.002824 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.521626 B = 9914.083370 C =10250.012965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.527 5.527 11 C 0.039 3.961 12 C 0.119 3.881 13 N -0.603 5.603 14 C 0.544 3.456 15 O -0.546 6.546 16 C -0.178 4.178 17 H 0.124 0.876 18 C -0.142 4.142 19 C -0.129 4.129 20 C -0.083 4.083 21 C -0.153 4.153 22 C 0.054 3.946 23 N -0.685 5.685 24 C 0.095 3.905 25 C 0.109 3.891 26 C 0.051 3.949 27 H 0.264 0.736 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.338 0.662 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.026 0.974 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.525 -16.287 9.234 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.252 5.252 11 C -0.091 4.091 12 C -0.004 4.004 13 N -0.336 5.336 14 C 0.332 3.668 15 O -0.425 6.425 16 C -0.200 4.200 17 H 0.141 0.859 18 C -0.179 4.179 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.192 4.192 22 C -0.076 4.076 23 N -0.312 5.312 24 C -0.033 4.033 25 C -0.013 4.013 26 C -0.078 4.078 27 H 0.074 0.926 28 H 0.006 0.994 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.155 0.845 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.044 0.956 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.249 -16.670 8.210 23.417 hybrid contribution -0.531 1.712 1.097 2.102 sum 13.718 -14.958 9.307 22.329 Atomic orbital electron populations 1.69888 1.06115 1.26940 1.50776 1.24891 0.94739 0.98877 0.94729 0.86872 0.80265 0.84012 0.78664 1.20077 1.21159 1.19334 1.20998 0.88574 0.94737 1.50720 0.90067 1.20177 0.97170 0.83775 0.95217 1.61892 1.10152 1.19310 1.33803 1.22455 0.90328 0.95412 1.00877 1.21737 1.00235 0.90793 0.87611 1.48177 1.10232 1.45042 1.30102 1.19617 0.85304 0.78846 0.82994 1.90614 1.17147 1.65432 1.69265 1.22266 1.00480 1.04534 0.92687 0.85863 1.23051 1.03002 0.98352 0.93541 1.22403 0.97034 0.92104 1.01594 1.21213 0.98184 0.94576 0.98090 1.22247 0.97012 1.01552 0.98390 1.22018 0.93982 0.91936 0.99660 1.60869 1.52245 1.03812 1.14292 1.21981 0.85276 1.03126 0.92966 1.22127 0.80354 0.98132 1.00727 1.22439 1.02968 0.91664 0.90775 0.92581 0.99371 0.95602 0.95507 0.90028 0.89259 0.90805 0.87902 0.88265 0.91216 0.91632 0.91872 0.91406 0.91003 0.91079 0.84535 0.90640 0.87671 0.90466 0.89924 0.95621 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.51 -13.93 8.96 -34.44 -0.31 -14.24 16 8 H 0.08 2.38 7.37 -52.49 -0.39 1.99 16 9 C 0.16 3.79 3.79 -4.97 -0.02 3.77 16 10 N -0.53 -10.41 4.62 -235.46 -1.09 -11.50 16 11 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 12 C 0.12 1.75 6.60 -3.60 -0.02 1.73 16 13 N -0.60 -8.65 3.00 -172.19 -0.52 -9.17 16 14 C 0.54 7.59 7.47 -10.99 -0.08 7.51 16 15 O -0.55 -8.79 12.56 5.56 0.07 -8.73 16 16 C -0.18 -1.93 4.69 -91.87 -0.43 -2.36 16 17 H 0.12 1.18 6.87 -51.93 -0.36 0.82 16 18 C -0.14 -1.35 9.62 -26.83 -0.26 -1.61 16 19 C -0.13 -1.26 2.11 -154.56 -0.33 -1.58 16 20 C -0.08 -0.67 5.76 -26.44 -0.15 -0.82 16 21 C -0.15 -1.07 6.08 -26.56 -0.16 -1.23 16 22 C 0.05 0.43 6.46 -3.82 -0.02 0.40 16 23 N -0.68 -6.67 6.87 -113.58 -0.78 -7.45 16 24 C 0.10 1.08 4.84 -3.66 -0.02 1.06 16 25 C 0.11 1.51 6.48 -3.36 -0.02 1.49 16 26 C 0.05 0.88 5.47 -3.47 -0.02 0.87 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 29 H 0.03 0.61 7.40 -51.93 -0.38 0.22 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 32 H 0.09 1.30 7.06 -51.92 -0.37 0.93 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 42 H 0.34 2.96 8.86 -39.29 -0.35 2.62 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.11 1.43 5.88 -51.93 -0.31 1.13 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.08 0.92 5.78 -51.93 -0.30 0.62 16 47 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 1.98 6.67 -51.92 -0.35 1.63 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -30.39 363.79 -10.93 -41.33 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.24 Total: 2.22 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.96 Total: -2.53 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -1.61 Total: -54.09 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.39 -10.93 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601851367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.925 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds