Wall clock time and date at job start Fri Apr 10 2020 14:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00397 * 2 1 4 4 H 1.48503 * 109.46897 * 270.00218 * 3 2 1 5 5 H 1.48498 * 109.46803 * 29.99802 * 3 2 1 6 6 H 1.48498 * 109.47061 * 150.00090 * 3 2 1 7 7 C 1.37875 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00300 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00133 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99755 * 170.00384 * 10 9 7 12 12 C 1.53234 * 109.33820 * 187.25899 * 11 10 9 13 13 N 1.47082 * 108.52199 * 306.16619 * 12 11 10 14 14 C 1.34773 * 120.88519 * 231.19028 * 13 12 11 15 15 O 1.21283 * 119.99840 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00421 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.55060 * 34.30713 * 16 14 13 18 18 C 1.53046 * 117.52580 * 248.58292 * 16 14 13 19 19 C 1.52758 * 117.50485 * 180.02562 * 16 14 13 20 20 C 1.53239 * 117.77818 * 215.18146 * 19 16 14 21 21 C 1.53330 * 108.50558 * 197.18744 * 20 19 16 22 22 C 1.53004 * 109.24226 * 305.68712 * 21 20 19 23 23 N 1.46902 * 109.83855 * 62.22348 * 22 21 20 24 24 C 1.47048 * 111.23559 * 295.25280 * 23 22 21 25 25 C 1.47080 * 118.23605 * 51.45870 * 13 12 11 26 26 C 1.46892 * 111.00536 * 294.30414 * 10 9 7 27 27 H 0.97007 * 119.99597 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46728 * 60.00261 * 9 7 2 29 29 H 1.08991 * 109.47345 * 300.00568 * 9 7 2 30 30 H 1.08999 * 109.49524 * 67.29280 * 11 10 9 31 31 H 1.09005 * 109.49095 * 307.21459 * 11 10 9 32 32 H 1.09007 * 109.62662 * 186.45918 * 12 11 10 33 33 H 1.08997 * 109.63477 * 65.88103 * 12 11 10 34 34 H 1.08994 * 117.50468 * 145.06322 * 18 16 14 35 35 H 1.09001 * 117.50823 * 359.97438 * 18 16 14 36 36 H 1.08994 * 109.63148 * 77.47938 * 20 19 16 37 37 H 1.09001 * 109.62595 * 316.89289 * 20 19 16 38 38 H 1.09002 * 109.51943 * 65.63521 * 21 20 19 39 39 H 1.09001 * 109.51637 * 185.74725 * 21 20 19 40 40 H 1.08994 * 109.39687 * 182.40857 * 22 21 20 41 41 H 1.08997 * 109.39879 * 302.15400 * 22 21 20 42 42 H 1.00905 * 110.98099 * 59.35910 * 23 22 21 43 43 H 1.09003 * 109.56706 * 298.25603 * 24 23 22 44 44 H 1.08996 * 109.66351 * 177.95831 * 24 23 22 45 45 H 1.08997 * 109.62729 * 68.25555 * 25 13 12 46 46 H 1.08995 * 109.63227 * 188.83196 * 25 13 12 47 47 H 1.09001 * 109.49307 * 292.70901 * 26 10 9 48 48 H 1.09007 * 109.49221 * 52.78356 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5792 0.0013 11 6 5.4499 -2.6256 -0.2373 12 6 5.8894 -4.0835 -0.4087 13 7 5.4262 -4.8514 0.7571 14 6 6.2764 -5.6305 1.4545 15 8 7.4407 -5.7057 1.1230 16 6 5.7806 -6.4084 2.6462 17 1 4.7582 -6.7791 2.5734 18 6 6.2804 -5.9803 4.0280 19 6 6.7931 -7.2727 3.3954 20 6 6.3019 -8.5989 3.9855 21 6 7.3208 -9.0749 5.0278 22 6 8.7081 -9.1361 4.3855 23 7 9.1147 -7.7939 3.9483 24 6 8.2357 -7.2921 2.8815 25 6 4.0091 -4.7511 1.1380 26 6 3.6449 -3.2623 1.2520 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6798 0.8895 29 1 3.8745 -0.6809 -0.8904 30 1 5.9726 -2.1855 0.6119 31 1 5.6877 -2.0653 -1.1415 32 1 6.9765 -4.1333 -0.4715 33 1 5.4483 -4.4947 -1.3167 34 1 5.5869 -6.0696 4.8641 35 1 6.9684 -5.1361 4.0753 36 1 6.2142 -9.3421 3.1930 37 1 5.3326 -8.4511 4.4617 38 1 7.3376 -8.3776 5.8654 39 1 7.0407 -10.0660 5.3846 40 1 9.4269 -9.5149 5.1119 41 1 8.6793 -9.8037 3.5244 42 1 9.1406 -7.1526 4.7270 43 1 8.3050 -7.9473 2.0131 44 1 8.5373 -6.2826 2.6022 45 1 3.3907 -5.2252 0.3759 46 1 3.8524 -5.2424 2.0983 47 1 4.1928 -2.8134 2.0805 48 1 2.5736 -3.1637 1.4280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601851367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:39 Heat of formation + Delta-G solvation = -16.859268 kcal Electronic energy + Delta-G solvation = -26146.826135 eV Core-core repulsion = 22622.382755 eV Total energy + Delta-G solvation = -3524.443380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77217 -40.12094 -38.74319 -36.17077 -35.99319 -34.42999 -32.52660 -32.21449 -30.56095 -28.83391 -27.45643 -25.39570 -24.71870 -24.44063 -23.31853 -22.86443 -21.71987 -20.13688 -19.57317 -18.95250 -18.39352 -17.08953 -16.82819 -16.53382 -16.33949 -16.06263 -15.88421 -15.66737 -15.52330 -15.26082 -15.12919 -14.62275 -14.46859 -14.28561 -13.72188 -13.60899 -13.56762 -13.30209 -13.17755 -12.92052 -12.85758 -12.54967 -12.46658 -12.33935 -12.20692 -12.17949 -11.91762 -11.86072 -11.84660 -11.43365 -11.06733 -10.84511 -10.78508 -10.50709 -9.77865 -9.26003 -9.08488 -8.28825 -6.31857 1.34583 1.35615 1.42707 1.45397 1.89065 2.33328 2.71004 3.03564 3.13207 3.34580 3.42664 3.67234 3.74358 3.88426 3.96544 4.00000 4.06349 4.13065 4.19528 4.24473 4.29924 4.38799 4.50626 4.53544 4.59557 4.69926 4.71447 4.77039 4.79112 4.83537 4.90563 4.92635 4.99707 5.03063 5.03856 5.08879 5.10535 5.15131 5.31865 5.38917 5.45878 5.51511 5.91381 6.10685 6.27106 6.40181 6.51807 6.58731 6.74276 7.12915 7.31858 8.87099 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.030083 B = 0.002824 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.521626 B = 9914.083370 C =10250.012965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.514 4.514 8 H 0.046 0.954 9 C 0.172 3.828 10 N -0.540 5.540 11 C 0.043 3.957 12 C 0.124 3.876 13 N -0.608 5.608 14 C 0.540 3.460 15 O -0.571 6.571 16 C -0.188 4.188 17 H 0.143 0.857 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.081 4.081 21 C -0.146 4.146 22 C 0.052 3.948 23 N -0.694 5.694 24 C 0.104 3.896 25 C 0.122 3.878 26 C 0.052 3.948 27 H 0.267 0.733 28 H -0.016 1.016 29 H 0.029 0.971 30 H 0.023 0.977 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.344 0.656 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.024 0.976 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.590 -17.039 10.617 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.045 3.955 10 N -0.265 5.265 11 C -0.086 4.086 12 C 0.001 3.999 13 N -0.340 5.340 14 C 0.330 3.670 15 O -0.451 6.451 16 C -0.209 4.209 17 H 0.160 0.840 18 C -0.167 4.167 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.185 4.185 22 C -0.077 4.077 23 N -0.322 5.322 24 C -0.026 4.026 25 C -0.001 4.001 26 C -0.077 4.077 27 H 0.076 0.924 28 H 0.002 0.998 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.161 0.839 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.133 0.867 47 H 0.042 0.958 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.332 -17.449 9.602 25.134 hybrid contribution -0.826 1.858 0.658 2.137 sum 14.506 -15.591 10.260 23.638 Atomic orbital electron populations 1.70031 1.07950 1.28056 1.52472 1.25761 0.95529 1.02843 0.94477 0.85791 0.79257 0.79155 0.79176 1.19110 1.20823 1.17933 1.21212 0.90694 0.93449 1.49825 0.93590 1.19934 0.94563 0.86061 0.94937 1.61812 1.12257 1.17248 1.35160 1.22489 0.88125 0.96953 1.01063 1.21629 1.00377 0.89651 0.88195 1.48249 1.10454 1.45214 1.30051 1.20170 0.84829 0.78538 0.83420 1.90620 1.18267 1.66205 1.70016 1.22315 1.01595 1.05092 0.91938 0.83976 1.23116 1.02773 0.97624 0.93230 1.22395 0.95701 0.93333 1.01199 1.21249 0.99102 0.93226 0.98278 1.22195 0.95773 1.02556 0.98001 1.22079 0.95229 0.90639 0.99775 1.60822 1.52214 1.04810 1.14351 1.21671 0.86838 1.01069 0.92997 1.22052 0.80036 0.95440 1.02555 1.22409 1.01406 0.94047 0.89810 0.92425 0.99801 0.95288 0.95881 0.89175 0.88961 0.90409 0.85525 0.89395 0.91522 0.90167 0.91357 0.89817 0.89697 0.91831 0.83877 0.92760 0.90272 0.90357 0.86720 0.95813 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 2 C 0.01 0.66 5.47 84.65 0.46 1.12 16 3 Si 0.94 43.11 27.47 68.60 1.88 45.00 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.51 -28.48 8.96 25.60 0.23 -28.25 16 8 H 0.05 2.81 7.37 -2.91 -0.02 2.79 16 9 C 0.17 7.97 3.79 85.56 0.32 8.30 16 10 N -0.54 -21.17 4.62 -898.88 -4.15 -25.33 16 11 C 0.04 1.38 5.62 86.38 0.49 1.86 16 12 C 0.12 3.55 6.60 86.35 0.57 4.12 16 13 N -0.61 -16.65 3.00 -817.06 -2.45 -19.10 16 14 C 0.54 14.47 7.47 87.66 0.65 15.13 16 15 O -0.57 -18.29 12.56 -3.04 -0.04 -18.33 16 16 C -0.19 -3.67 4.69 -11.60 -0.05 -3.72 16 17 H 0.14 2.23 6.87 -2.39 -0.02 2.22 16 18 C -0.13 -2.16 9.62 30.53 0.29 -1.86 16 19 C -0.12 -2.18 2.11 -52.21 -0.11 -2.29 16 20 C -0.08 -1.07 5.76 30.78 0.18 -0.90 16 21 C -0.15 -1.62 6.08 30.71 0.19 -1.43 16 22 C 0.05 0.73 6.46 86.30 0.56 1.29 16 23 N -0.69 -12.84 6.87 -513.26 -3.53 -16.36 16 24 C 0.10 2.31 4.84 86.33 0.42 2.73 16 25 C 0.12 3.18 6.48 86.50 0.56 3.74 16 26 C 0.05 1.81 5.47 86.54 0.47 2.28 16 27 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 28 H -0.02 -0.74 7.18 -2.39 -0.02 -0.75 16 29 H 0.03 1.33 7.40 -2.39 -0.02 1.31 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 2.74 7.99 -2.38 -0.02 2.72 16 32 H 0.09 2.61 7.06 -2.38 -0.02 2.59 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.86 8.08 -2.39 -0.02 0.85 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 42 H 0.34 5.59 8.86 -89.69 -0.79 4.80 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 2.19 5.88 -2.39 -0.01 2.18 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.11 2.26 5.78 -2.39 -0.01 2.24 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 3.08 6.67 -2.38 -0.02 3.06 16 Total: -1.00 -66.92 363.79 -2.67 -69.58 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.09 Total: 19.54 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.23 Total: 2.12 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -9.84 Total: -117.90 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.04 Total: -18.33 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Total: -66.92 -2.67 -69.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601851367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.722 kcal (2) G-P(sol) polarization free energy of solvation -66.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds