Wall clock time and date at job start Fri Apr 10 2020 14:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48505 * 109.47242 * 240.00154 * 3 2 1 5 5 H 1.48499 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47162 * 120.00034 * 3 2 1 7 7 C 1.37878 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99893 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99748 * 169.99647 * 10 9 7 12 12 C 1.53239 * 109.33971 * 187.25413 * 11 10 9 13 13 N 1.47083 * 108.52184 * 306.17366 * 12 11 10 14 14 C 1.34775 * 120.88302 * 231.18484 * 13 12 11 15 15 O 1.21284 * 119.99456 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00172 * 180.02562 * 14 13 12 17 17 H 1.08997 * 115.56994 * 37.88963 * 16 14 13 18 18 C 1.53039 * 117.50863 * 183.62169 * 16 14 13 19 19 C 1.52760 * 59.95810 * 107.46920 * 18 16 14 20 20 C 1.53487 * 117.94933 * 252.32189 * 19 18 16 21 21 C 1.53333 * 108.56550 * 162.85529 * 20 19 18 22 22 C 1.53001 * 109.19963 * 54.28635 * 21 20 19 23 23 N 1.46784 * 109.89019 * 297.73769 * 22 21 20 24 24 C 1.47056 * 111.20408 * 64.79951 * 23 22 21 25 25 C 1.47078 * 118.23476 * 51.46025 * 13 12 11 26 26 C 1.46892 * 111.00133 * 294.30355 * 10 9 7 27 27 H 0.96995 * 120.00192 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46962 * 60.00280 * 9 7 2 29 29 H 1.08998 * 109.47363 * 299.99924 * 9 7 2 30 30 H 1.08999 * 109.48994 * 67.29569 * 11 10 9 31 31 H 1.09003 * 109.51504 * 307.23231 * 11 10 9 32 32 H 1.08992 * 109.62721 * 186.46434 * 12 11 10 33 33 H 1.09000 * 109.62223 * 65.88204 * 12 11 10 34 34 H 1.09007 * 117.49743 * 359.97438 * 18 16 14 35 35 H 1.08994 * 117.50093 * 214.94880 * 18 16 14 36 36 H 1.08998 * 109.60086 * 43.13224 * 20 19 18 37 37 H 1.09004 * 109.60619 * 282.57714 * 20 19 18 38 38 H 1.09006 * 109.51448 * 294.36939 * 21 20 19 39 39 H 1.08994 * 109.51731 * 174.20493 * 21 20 19 40 40 H 1.08999 * 109.39910 * 177.61101 * 22 21 20 41 41 H 1.08994 * 109.40171 * 57.86715 * 22 21 20 42 42 H 1.00907 * 110.99848 * 188.89782 * 23 22 21 43 43 H 1.09002 * 109.56774 * 61.74177 * 24 23 22 44 44 H 1.08995 * 109.56906 * 181.97413 * 24 23 22 45 45 H 1.08993 * 109.63559 * 68.25216 * 25 13 12 46 46 H 1.09004 * 109.62830 * 188.83036 * 25 13 12 47 47 H 1.09005 * 109.49465 * 292.70395 * 26 10 9 48 48 H 1.09000 * 109.49718 * 52.78288 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5214 -4.8935 0.2388 12 6 2.5640 -6.0032 0.4116 13 7 3.4618 -5.9862 -0.7533 14 6 3.7122 -7.1123 -1.4501 15 8 3.1940 -8.1578 -1.1194 16 6 4.6359 -7.0723 -2.6401 17 1 5.5020 -6.4180 -2.5416 18 6 4.8136 -8.3645 -3.4407 19 6 4.0072 -7.2068 -4.0263 20 6 2.4823 -7.3613 -4.1084 21 6 1.8610 -5.9736 -4.3069 22 6 2.5023 -5.3047 -5.5244 23 7 3.9394 -5.1169 -5.2918 24 6 4.6324 -6.4085 -5.1740 25 6 4.0840 -4.7090 -1.1337 26 6 2.9769 -3.6490 -1.2493 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 0.8798 -5.1264 -0.6111 31 1 0.9158 -4.8194 1.1421 32 1 2.0634 -6.9693 0.4740 33 1 3.1395 -5.8264 1.3202 34 1 4.2627 -9.2436 -3.1062 35 1 5.7968 -8.5602 -3.8685 36 1 2.1090 -7.8008 -3.1834 37 1 2.2245 -8.0020 -4.9518 38 1 2.0394 -5.3646 -3.4206 39 1 0.7881 -6.0750 -4.4701 40 1 2.0332 -4.3355 -5.6939 41 1 2.3568 -5.9344 -6.4020 42 1 4.3520 -4.5499 -6.0174 43 1 4.5277 -6.9653 -6.1053 44 1 5.6890 -6.2384 -4.9673 45 1 4.8029 -4.4102 -0.3709 46 1 4.5889 -4.8191 -2.0934 47 1 2.3151 -3.8993 -2.0785 48 1 3.4273 -2.6721 -1.4250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601851373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:47 Heat of formation + Delta-G solvation = -1.072697 kcal Electronic energy + Delta-G solvation = -27202.731038 eV Core-core repulsion = 23678.972215 eV Total energy + Delta-G solvation = -3523.758823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61596 -38.73133 -37.36205 -35.24277 -34.30498 -32.38446 -31.91353 -30.77321 -28.38467 -27.82781 -25.76641 -24.21158 -23.93752 -22.99544 -21.77594 -21.67200 -20.31780 -19.29046 -17.90896 -17.14816 -16.64365 -16.34064 -15.67954 -15.11859 -14.92668 -14.73169 -14.36207 -14.23602 -14.20593 -13.93354 -13.62093 -13.50192 -13.33021 -12.86873 -12.75568 -12.53383 -12.23561 -11.98205 -11.85401 -11.37755 -11.22140 -11.07492 -10.98377 -10.87697 -10.68537 -10.66283 -10.55019 -10.46844 -10.18968 -9.95950 -9.84644 -9.51457 -9.25852 -8.57289 -8.46366 -8.34078 -7.26150 -6.03872 -4.05589 2.62606 3.16476 3.32538 3.36943 3.39503 3.63010 4.17773 4.37700 4.41283 4.55311 4.70412 4.76533 4.87486 4.90689 5.01816 5.16510 5.31533 5.36777 5.40070 5.42100 5.43844 5.49619 5.54775 5.58420 5.66630 5.72436 5.75552 5.83909 5.86355 5.94885 5.96577 5.98879 6.10045 6.21210 6.27077 6.33349 6.54125 6.66312 6.78753 6.84343 7.22002 7.26468 7.32080 7.65653 7.77657 8.05717 8.16609 8.37867 8.51416 9.01371 9.58720 11.06934 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.004247 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.305473 B = 6590.965492 C = 7426.203450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.536 5.536 11 C 0.043 3.957 12 C 0.118 3.882 13 N -0.601 5.601 14 C 0.548 3.452 15 O -0.556 6.556 16 C -0.172 4.172 17 H 0.123 0.877 18 C -0.143 4.143 19 C -0.088 4.088 20 C -0.091 4.091 21 C -0.119 4.119 22 C 0.062 3.938 23 N -0.684 5.684 24 C 0.096 3.904 25 C 0.110 3.890 26 C 0.056 3.944 27 H 0.262 0.738 28 H -0.010 1.010 29 H 0.030 0.970 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.027 0.973 42 H 0.344 0.656 43 H 0.037 0.963 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.028 0.972 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.936 -13.734 -10.824 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.262 5.262 11 C -0.087 4.087 12 C -0.005 4.005 13 N -0.332 5.332 14 C 0.336 3.664 15 O -0.436 6.436 16 C -0.193 4.193 17 H 0.141 0.859 18 C -0.181 4.181 19 C -0.089 4.089 20 C -0.128 4.128 21 C -0.157 4.157 22 C -0.068 4.068 23 N -0.316 5.316 24 C -0.034 4.034 25 C -0.013 4.013 26 C -0.073 4.073 27 H 0.071 0.929 28 H 0.008 0.992 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.162 0.838 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.046 0.954 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.739 -13.971 -9.578 19.060 hybrid contribution -0.155 0.763 -1.478 1.670 sum 8.583 -13.208 -11.056 19.245 Atomic orbital electron populations 1.69949 1.06082 1.26896 1.50864 1.24980 0.94834 0.99280 0.95405 0.86571 0.79444 0.82794 0.78651 1.20254 1.21409 1.20164 1.21098 0.93408 0.89877 1.50254 0.91888 1.19701 0.89994 0.87204 0.96091 1.62077 1.27967 1.02570 1.33551 1.22379 0.94898 0.90663 1.00731 1.21743 0.91776 0.99370 0.87598 1.48117 1.46444 1.08675 1.30010 1.19530 0.81052 0.83050 0.82745 1.90637 1.52835 1.30459 1.69634 1.22300 1.01905 1.03431 0.91652 0.85917 1.23054 1.01492 0.92388 1.01138 1.21469 0.95199 1.00174 0.92099 1.21333 0.91449 0.97422 1.02595 1.21636 0.98813 0.95966 0.99262 1.21853 0.88335 1.00268 0.96307 1.60192 1.03176 1.15793 1.52394 1.21507 0.97410 0.89186 0.95265 1.22129 0.96101 0.82379 1.00672 1.22365 0.95000 0.98862 0.91074 0.92869 0.99190 0.95176 0.95694 0.90257 0.89616 0.91067 0.87429 0.88114 0.90641 0.91724 0.90475 0.91610 0.90618 0.95523 0.83764 0.94494 0.90452 0.91140 0.89423 0.95398 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.86 8.41 -34.44 -0.29 -14.15 16 8 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 9 C 0.19 4.98 4.72 -4.97 -0.02 4.95 16 10 N -0.54 -11.23 4.62 -235.45 -1.09 -12.32 16 11 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 12 C 0.12 1.90 6.60 -3.60 -0.02 1.88 16 13 N -0.60 -9.37 3.00 -172.18 -0.52 -9.89 16 14 C 0.55 8.43 6.26 -10.99 -0.07 8.36 16 15 O -0.56 -10.03 14.81 5.55 0.08 -9.95 16 16 C -0.17 -2.07 4.54 -91.86 -0.42 -2.49 16 17 H 0.12 1.33 7.06 -51.93 -0.37 0.96 16 18 C -0.14 -1.48 9.52 -26.83 -0.26 -1.73 16 19 C -0.09 -0.96 2.12 -154.41 -0.33 -1.28 16 20 C -0.09 -1.09 5.43 -26.31 -0.14 -1.24 16 21 C -0.12 -1.48 6.12 -26.56 -0.16 -1.64 16 22 C 0.06 0.65 6.44 -3.89 -0.03 0.63 16 23 N -0.68 -6.81 6.85 -113.67 -0.78 -7.59 16 24 C 0.10 0.86 6.31 -3.66 -0.02 0.84 16 25 C 0.11 1.66 6.48 -3.36 -0.02 1.63 16 26 C 0.06 1.04 5.47 -3.46 -0.02 1.02 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 29 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 32 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.11 1.26 7.68 -51.93 -0.40 0.86 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.10 6.23 -51.93 -0.32 0.77 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.18 6.66 -51.93 -0.35 0.83 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.25 8.13 -51.93 -0.42 -0.17 16 42 H 0.34 2.77 8.90 -39.29 -0.35 2.42 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 1.16 5.86 -51.93 -0.30 0.86 16 47 H 0.03 0.54 6.66 -51.93 -0.35 0.20 16 48 H 0.09 1.88 6.67 -51.93 -0.35 1.54 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -30.85 366.56 -11.11 -41.96 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.13 Total: 2.67 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.92 Total: -1.00 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -1.65 Total: -55.41 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.85 -11.11 -41.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601851373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.886 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds