Wall clock time and date at job start Fri Apr 10 2020 14:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48505 * 109.47242 * 240.00154 * 3 2 1 5 5 H 1.48499 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47162 * 120.00034 * 3 2 1 7 7 C 1.37878 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99893 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99748 * 169.99647 * 10 9 7 12 12 C 1.53239 * 109.33971 * 187.25413 * 11 10 9 13 13 N 1.47083 * 108.52184 * 306.17366 * 12 11 10 14 14 C 1.34775 * 120.88302 * 231.18484 * 13 12 11 15 15 O 1.21284 * 119.99456 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00172 * 180.02562 * 14 13 12 17 17 H 1.08997 * 115.56994 * 37.88963 * 16 14 13 18 18 C 1.53039 * 117.50863 * 183.62169 * 16 14 13 19 19 C 1.52760 * 59.95810 * 107.46920 * 18 16 14 20 20 C 1.53487 * 117.94933 * 252.32189 * 19 18 16 21 21 C 1.53333 * 108.56550 * 162.85529 * 20 19 18 22 22 C 1.53001 * 109.19963 * 54.28635 * 21 20 19 23 23 N 1.46784 * 109.89019 * 297.73769 * 22 21 20 24 24 C 1.47056 * 111.20408 * 64.79951 * 23 22 21 25 25 C 1.47078 * 118.23476 * 51.46025 * 13 12 11 26 26 C 1.46892 * 111.00133 * 294.30355 * 10 9 7 27 27 H 0.96995 * 120.00192 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46962 * 60.00280 * 9 7 2 29 29 H 1.08998 * 109.47363 * 299.99924 * 9 7 2 30 30 H 1.08999 * 109.48994 * 67.29569 * 11 10 9 31 31 H 1.09003 * 109.51504 * 307.23231 * 11 10 9 32 32 H 1.08992 * 109.62721 * 186.46434 * 12 11 10 33 33 H 1.09000 * 109.62223 * 65.88204 * 12 11 10 34 34 H 1.09007 * 117.49743 * 359.97438 * 18 16 14 35 35 H 1.08994 * 117.50093 * 214.94880 * 18 16 14 36 36 H 1.08998 * 109.60086 * 43.13224 * 20 19 18 37 37 H 1.09004 * 109.60619 * 282.57714 * 20 19 18 38 38 H 1.09006 * 109.51448 * 294.36939 * 21 20 19 39 39 H 1.08994 * 109.51731 * 174.20493 * 21 20 19 40 40 H 1.08999 * 109.39910 * 177.61101 * 22 21 20 41 41 H 1.08994 * 109.40171 * 57.86715 * 22 21 20 42 42 H 1.00907 * 110.99848 * 188.89782 * 23 22 21 43 43 H 1.09002 * 109.56774 * 61.74177 * 24 23 22 44 44 H 1.08995 * 109.56906 * 181.97413 * 24 23 22 45 45 H 1.08993 * 109.63559 * 68.25216 * 25 13 12 46 46 H 1.09004 * 109.62830 * 188.83036 * 25 13 12 47 47 H 1.09005 * 109.49465 * 292.70395 * 26 10 9 48 48 H 1.09000 * 109.49718 * 52.78288 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5214 -4.8935 0.2388 12 6 2.5640 -6.0032 0.4116 13 7 3.4618 -5.9862 -0.7533 14 6 3.7122 -7.1123 -1.4501 15 8 3.1940 -8.1578 -1.1194 16 6 4.6359 -7.0723 -2.6401 17 1 5.5020 -6.4180 -2.5416 18 6 4.8136 -8.3645 -3.4407 19 6 4.0072 -7.2068 -4.0263 20 6 2.4823 -7.3613 -4.1084 21 6 1.8610 -5.9736 -4.3069 22 6 2.5023 -5.3047 -5.5244 23 7 3.9394 -5.1169 -5.2918 24 6 4.6324 -6.4085 -5.1740 25 6 4.0840 -4.7090 -1.1337 26 6 2.9769 -3.6490 -1.2493 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 0.8798 -5.1264 -0.6111 31 1 0.9158 -4.8194 1.1421 32 1 2.0634 -6.9693 0.4740 33 1 3.1395 -5.8264 1.3202 34 1 4.2627 -9.2436 -3.1062 35 1 5.7968 -8.5602 -3.8685 36 1 2.1090 -7.8008 -3.1834 37 1 2.2245 -8.0020 -4.9518 38 1 2.0394 -5.3646 -3.4206 39 1 0.7881 -6.0750 -4.4701 40 1 2.0332 -4.3355 -5.6939 41 1 2.3568 -5.9344 -6.4020 42 1 4.3520 -4.5499 -6.0174 43 1 4.5277 -6.9653 -6.1053 44 1 5.6890 -6.2384 -4.9673 45 1 4.8029 -4.4102 -0.3709 46 1 4.5889 -4.8191 -2.0934 47 1 2.3151 -3.8993 -2.0785 48 1 3.4273 -2.6721 -1.4250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601851373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:47 Heat of formation + Delta-G solvation = -22.674195 kcal Electronic energy + Delta-G solvation = -27203.667749 eV Core-core repulsion = 23678.972215 eV Total energy + Delta-G solvation = -3524.695534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72169 -39.89092 -38.74382 -36.17171 -35.91724 -34.36996 -32.80137 -32.21813 -30.05248 -28.82418 -27.42509 -25.41279 -24.90135 -24.47046 -23.46249 -22.57218 -21.73540 -20.36113 -19.06663 -18.46678 -18.31950 -17.48968 -16.92112 -16.66049 -16.30034 -15.99209 -15.85256 -15.51980 -15.34416 -15.10864 -14.99582 -14.82313 -14.23685 -14.22221 -13.98678 -13.70477 -13.63884 -13.45154 -13.04198 -12.88806 -12.76197 -12.54641 -12.40836 -12.35363 -12.17140 -12.12595 -11.91428 -11.75629 -11.51915 -11.29292 -11.09243 -10.89264 -10.67229 -10.59184 -9.73733 -9.30097 -9.03725 -8.18282 -6.28651 1.44432 1.47561 1.48020 1.55259 1.95670 2.42742 2.74850 3.14079 3.24327 3.38995 3.41651 3.66547 3.80363 3.88082 3.92916 4.03154 4.05115 4.10427 4.25486 4.30062 4.30469 4.44400 4.51654 4.58636 4.61143 4.68077 4.71555 4.75979 4.83993 4.84782 4.88091 4.94967 4.97090 5.01835 5.02817 5.10836 5.18275 5.24224 5.31499 5.38143 5.48877 5.65374 6.03688 6.08386 6.24749 6.45670 6.57272 6.58457 6.86640 7.15298 7.41234 8.92973 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.004247 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.305473 B = 6590.965492 C = 7426.203450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.211 3.789 10 N -0.538 5.538 11 C 0.047 3.953 12 C 0.126 3.874 13 N -0.605 5.605 14 C 0.545 3.455 15 O -0.587 6.587 16 C -0.186 4.186 17 H 0.144 0.856 18 C -0.127 4.127 19 C -0.086 4.086 20 C -0.088 4.088 21 C -0.118 4.118 22 C 0.067 3.933 23 N -0.696 5.696 24 C 0.100 3.900 25 C 0.125 3.875 26 C 0.060 3.940 27 H 0.264 0.736 28 H -0.043 1.043 29 H 0.003 0.997 30 H 0.010 0.990 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.357 0.643 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.014 0.986 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.035 -13.809 -12.325 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.558 4.558 8 H 0.087 0.913 9 C 0.085 3.915 10 N -0.262 5.262 11 C -0.083 4.083 12 C 0.003 3.997 13 N -0.337 5.337 14 C 0.336 3.664 15 O -0.469 6.469 16 C -0.206 4.206 17 H 0.161 0.839 18 C -0.164 4.164 19 C -0.087 4.087 20 C -0.126 4.126 21 C -0.156 4.156 22 C -0.062 4.062 23 N -0.329 5.329 24 C -0.029 4.029 25 C 0.003 3.997 26 C -0.068 4.068 27 H 0.072 0.928 28 H -0.025 1.025 29 H 0.021 0.979 30 H 0.029 0.971 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.153 0.847 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.177 0.823 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.033 0.967 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.867 -14.060 -11.092 21.484 hybrid contribution -1.217 0.708 -1.004 1.730 sum 10.649 -13.352 -12.097 20.929 Atomic orbital electron populations 1.70093 1.07898 1.27938 1.51807 1.25922 0.95657 1.03252 0.94748 0.85427 0.78113 0.77765 0.79270 1.18874 1.21235 1.19266 1.21401 0.93753 0.90640 1.50037 0.91325 1.19347 0.90042 0.88972 0.93185 1.62025 1.26890 1.02372 1.34956 1.22389 0.95521 0.90236 1.00116 1.21587 0.91448 0.98103 0.88523 1.48190 1.46401 1.09184 1.29909 1.20151 0.80926 0.82218 0.83154 1.90620 1.54184 1.31535 1.70521 1.22371 1.01993 1.05645 0.90633 0.83882 1.23129 1.02691 0.90956 0.99673 1.21560 0.94244 1.00879 0.92004 1.21265 0.92825 0.96941 1.01543 1.21583 0.99030 0.96041 0.98920 1.21735 0.88948 0.99975 0.95566 1.60141 1.02704 1.16772 1.53285 1.21567 0.98016 0.88484 0.94852 1.22041 0.94527 0.80764 1.02394 1.22341 0.95399 0.99646 0.89446 0.92772 1.02541 0.97909 0.97128 0.90212 0.89584 0.90022 0.89183 0.84697 0.93781 0.90266 0.93782 0.92108 0.91227 0.93921 0.82274 0.92910 0.88367 0.90088 0.86908 0.96748 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.30 13.29 21.45 0.28 -56.02 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.52 -28.88 8.41 25.60 0.22 -28.66 16 8 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 9 C 0.21 11.27 4.72 85.56 0.40 11.67 16 10 N -0.54 -23.18 4.62 -898.84 -4.15 -27.33 16 11 C 0.05 1.77 5.62 86.38 0.49 2.26 16 12 C 0.13 4.10 6.60 86.35 0.57 4.67 16 13 N -0.61 -18.56 3.00 -817.05 -2.45 -21.01 16 14 C 0.54 16.36 6.26 87.66 0.55 16.91 16 15 O -0.59 -21.25 14.81 -3.04 -0.05 -21.29 16 16 C -0.19 -4.03 4.54 -11.59 -0.05 -4.08 16 17 H 0.14 2.52 7.06 -2.39 -0.02 2.51 16 18 C -0.13 -2.25 9.52 30.53 0.29 -1.96 16 19 C -0.09 -1.65 2.12 -52.12 -0.11 -1.76 16 20 C -0.09 -2.08 5.43 30.87 0.17 -1.91 16 21 C -0.12 -2.96 6.12 30.71 0.19 -2.78 16 22 C 0.07 1.33 6.44 86.33 0.56 1.89 16 23 N -0.70 -12.00 6.85 -513.54 -3.52 -15.52 16 24 C 0.10 1.41 6.31 86.32 0.54 1.96 16 25 C 0.13 3.60 6.48 86.51 0.56 4.16 16 26 C 0.06 2.27 5.47 86.54 0.47 2.75 16 27 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 28 H -0.04 -2.54 8.12 -2.38 -0.02 -2.56 16 29 H 0.00 0.16 7.97 -2.39 -0.02 0.14 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 2.98 7.99 -2.39 -0.02 2.96 16 32 H 0.09 2.82 7.06 -2.39 -0.02 2.80 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.09 1.97 7.68 -2.38 -0.02 1.95 16 35 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.31 6.23 -2.39 -0.01 1.30 16 37 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.04 1.40 6.66 -2.38 -0.02 1.38 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.04 0.72 8.13 -2.39 -0.02 0.70 16 42 H 0.36 4.66 8.90 -89.69 -0.80 3.87 16 43 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 1.05 8.09 -2.39 -0.02 1.03 16 45 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.11 2.71 5.86 -2.38 -0.01 2.69 16 47 H 0.01 0.58 6.66 -2.38 -0.02 0.57 16 48 H 0.08 3.27 6.67 -2.39 -0.02 3.26 16 Total: -1.00 -68.89 366.56 -2.40 -71.29 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.15 Total: 18.76 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.30 Total: 5.70 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -9.84 Total: -119.88 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.89 -2.40 -71.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601851373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.620 kcal (2) G-P(sol) polarization free energy of solvation -68.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds