Wall clock time and date at job start Fri Apr 10 2020 14:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47068 * 90.00190 * 3 2 1 5 5 H 1.48500 * 109.47365 * 209.99680 * 3 2 1 6 6 H 1.48502 * 109.47307 * 330.00253 * 3 2 1 7 7 C 1.38815 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99687 * 170.31188 * 7 2 1 9 9 N 1.36936 * 119.99940 * 350.31785 * 7 2 1 10 10 C 1.46958 * 120.59287 * 148.66017 * 9 7 2 11 11 C 1.53813 * 108.39760 * 124.75800 * 10 9 7 12 12 N 1.46962 * 108.58142 * 49.63358 * 11 10 9 13 13 C 1.34781 * 120.59004 * 124.62220 * 12 11 10 14 14 O 1.21283 * 119.99666 * 185.18733 * 13 12 11 15 15 C 1.51489 * 120.00444 * 5.19184 * 13 12 11 16 16 C 1.52489 * 108.85494 * 172.96050 * 15 13 12 17 17 C 1.52159 * 112.51389 * 188.48839 * 16 15 13 18 18 C 1.52276 * 112.65811 * 45.30955 * 17 16 15 19 19 N 1.45836 * 112.46037 * 313.41212 * 18 17 16 20 20 C 1.45842 * 114.02265 * 289.01867 * 19 18 17 21 21 C 1.52269 * 112.22213 * 70.23661 * 20 19 18 22 22 C 1.52151 * 112.56765 * 47.16633 * 21 20 19 23 23 C 1.46508 * 112.07186 * 57.48420 * 19 18 17 24 24 C 1.46960 * 118.81267 * 304.65209 * 12 11 10 25 25 C 1.46962 * 120.59278 * 328.93557 * 9 7 2 26 26 H 0.97001 * 119.99881 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.61037 * 244.53849 * 10 9 7 28 28 H 1.09002 * 109.61563 * 5.05016 * 10 9 7 29 29 H 1.08999 * 109.74108 * 289.84402 * 11 10 9 30 30 H 1.09003 * 109.67373 * 169.38638 * 11 10 9 31 31 H 1.09691 * 109.04545 * 309.86753 * 16 15 13 32 32 H 1.09672 * 109.08483 * 67.05928 * 16 15 13 33 33 H 1.08672 * 110.93760 * 280.36295 * 17 16 15 34 34 H 1.10586 * 107.97305 * 164.29403 * 17 16 15 35 35 H 1.09672 * 109.04439 * 192.13634 * 18 17 16 36 36 H 1.09625 * 109.14285 * 74.86482 * 18 17 16 37 37 H 1.09675 * 109.19917 * 191.31099 * 20 19 18 38 38 H 1.09583 * 109.36088 * 308.87343 * 20 19 18 39 39 H 1.10541 * 107.92806 * 166.33563 * 21 20 19 40 40 H 1.08700 * 110.77219 * 282.32952 * 21 20 19 41 41 H 1.09714 * 109.20821 * 193.44815 * 22 21 20 42 42 H 1.09705 * 109.22397 * 76.15570 * 22 21 20 43 43 H 1.08867 * 109.92871 * 175.83201 * 23 19 18 44 44 H 1.08887 * 109.89470 * 54.81020 * 23 19 18 45 45 H 1.09000 * 109.60661 * 295.47327 * 24 12 11 46 46 H 1.08998 * 109.74900 * 175.05406 * 24 12 11 47 47 H 1.09004 * 109.60947 * 354.95544 * 25 9 7 48 48 H 1.08999 * 109.60964 * 115.46011 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0787 -1.2088 -0.1569 9 7 1.3402 -2.3795 0.2005 10 6 1.8074 -3.6223 -0.4294 11 6 2.0178 -4.6754 0.6717 12 7 0.8151 -4.7176 1.5153 13 6 0.1551 -5.8763 1.7113 14 8 -0.8874 -5.8829 2.3310 15 6 0.7155 -7.1703 1.1578 16 6 -0.1285 -8.3321 1.6708 17 6 0.4793 -9.6862 1.3357 18 6 1.9745 -9.7442 1.6182 19 7 2.6844 -8.5790 1.1033 20 6 2.7831 -8.5387 -0.3512 21 6 1.4392 -8.2636 -1.0123 22 6 0.6969 -7.1037 -0.3654 23 6 2.1568 -7.3266 1.6509 24 6 0.3447 -3.4737 2.1406 25 6 0.1375 -2.4217 1.0441 26 1 -0.4850 0.8401 0.0004 27 1 1.0599 -3.9760 -1.1396 28 1 2.7491 -3.4387 -0.9469 29 1 2.8815 -4.4053 1.2793 30 1 2.1810 -5.6531 0.2182 31 1 -0.2362 -8.2433 2.7588 32 1 -1.1318 -8.2674 1.2328 33 1 0.2691 -9.9621 0.3059 34 1 -0.0147 -10.4477 1.9674 35 1 2.3901 -10.6506 1.1614 36 1 2.1334 -9.8159 2.7005 37 1 3.4932 -7.7555 -0.6430 38 1 3.1751 -9.4951 -0.7153 39 1 1.6273 -8.0030 -2.0699 40 1 0.8245 -9.1600 -1.0235 41 1 -0.3444 -7.1038 -0.7111 42 1 1.1514 -6.1589 -0.6882 43 1 2.7566 -6.4875 1.3025 44 1 2.1695 -7.3636 2.7390 45 1 1.0892 -3.1181 2.8529 46 1 -0.5981 -3.6547 2.6568 47 1 -0.0240 -1.4448 1.5000 48 1 -0.7262 -2.6918 0.4365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602102417.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:36 Heat of formation + Delta-G solvation = 13.965386 kcal Electronic energy + Delta-G solvation = -27971.837601 eV Core-core repulsion = 24448.730879 eV Total energy + Delta-G solvation = -3523.106722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.44310 -38.77814 -36.83000 -34.21890 -33.33363 -33.10759 -31.36565 -31.11549 -29.85817 -27.01507 -26.45733 -24.57219 -23.76240 -23.22731 -22.36866 -21.56017 -20.43547 -18.75811 -18.66328 -17.04661 -16.20437 -15.99709 -15.66402 -15.21315 -15.08599 -14.83353 -14.57746 -13.84708 -13.78396 -13.63227 -13.51083 -13.36559 -13.25068 -13.01272 -12.77538 -12.45397 -12.24371 -11.73083 -11.58486 -11.47098 -11.33287 -11.14007 -11.12571 -10.98326 -10.86039 -10.67763 -10.62931 -10.52549 -10.20805 -10.01648 -9.89790 -9.73662 -9.16149 -8.59041 -8.25146 -8.14081 -6.67794 -5.84614 -3.36480 2.98929 3.33254 3.39095 3.40911 3.43521 3.84182 4.40178 4.43451 4.54474 4.71663 4.81984 4.84972 4.95048 5.02880 5.06012 5.22682 5.28886 5.30650 5.33380 5.38276 5.55561 5.64416 5.67291 5.70118 5.73063 5.76026 5.81112 5.87978 5.90228 5.91527 6.07435 6.14603 6.19542 6.20150 6.28388 6.36442 6.39321 6.51155 6.69163 6.87579 6.97769 7.13344 7.28611 7.60535 7.70217 7.93927 8.37953 8.59099 9.12167 9.72756 10.30542 11.21538 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.004008 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.849208 B = 6983.845544 C = 7457.816128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.006 3.994 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.590 5.590 10 C 0.131 3.869 11 C 0.066 3.934 12 N -0.592 5.592 13 C 0.517 3.483 14 O -0.555 6.555 15 C -0.099 4.099 16 C -0.088 4.088 17 C -0.152 4.152 18 C 0.067 3.933 19 N -0.543 5.543 20 C 0.065 3.935 21 C -0.151 4.151 22 C -0.119 4.119 23 C 0.059 3.941 24 C 0.085 3.915 25 C 0.159 3.841 26 H 0.256 0.744 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -18.622 0.522 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.058 4.058 12 N -0.324 5.324 13 C 0.303 3.697 14 O -0.433 6.433 15 C -0.104 4.104 16 C -0.126 4.126 17 C -0.191 4.191 18 C -0.062 4.062 19 N -0.263 5.263 20 C -0.064 4.064 21 C -0.190 4.190 22 C -0.157 4.157 23 C -0.069 4.069 24 C -0.038 4.038 25 C 0.032 3.968 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.122 0.878 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.564 -18.492 0.989 19.072 hybrid contribution -0.600 1.022 -0.382 1.245 sum 3.964 -17.470 0.607 17.924 Atomic orbital electron populations 1.69941 1.05326 1.25697 1.53825 1.25198 0.95433 0.98527 1.00173 0.86218 0.78982 0.83341 0.77746 1.21318 1.20362 1.21645 1.19203 0.90742 0.83663 1.45057 0.91550 1.43957 1.30438 1.03710 1.53194 1.21393 0.98386 0.87607 0.92305 1.23096 0.87113 1.01248 0.94392 1.47988 1.27899 1.08053 1.48417 1.20622 0.84187 0.84837 0.80004 1.90629 1.23116 1.86570 1.43033 1.21140 0.98625 0.93777 0.96888 1.21060 0.98223 0.91628 1.01713 1.22033 0.97490 0.97277 1.02255 1.21772 0.91005 0.92739 1.00638 1.60242 1.54466 1.02594 1.09028 1.21809 0.95838 1.02572 0.86132 1.21975 0.97957 0.98841 1.00185 1.21628 1.01815 0.99959 0.92261 1.22497 0.91382 0.92766 1.00223 1.22522 0.99460 0.84330 0.97503 1.21236 0.88124 0.97466 0.89951 0.93402 0.95976 0.91518 0.91587 0.88616 0.91440 0.91595 0.91531 0.92139 0.91084 0.91027 0.90599 0.90891 0.91671 0.91517 0.91640 0.89592 0.88160 0.90403 0.92266 0.90299 0.87822 0.96058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 10.93 55.49 0.61 -25.08 16 2 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 3 Si 0.91 21.12 29.56 -169.99 -5.03 16.10 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.77 9.59 -15.06 -0.14 -6.92 16 8 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 9 N -0.59 -14.26 2.96 -171.77 -0.51 -14.77 16 10 C 0.13 2.54 6.49 -3.37 -0.02 2.52 16 11 C 0.07 1.05 4.04 -3.37 -0.01 1.04 16 12 N -0.59 -10.71 2.93 -171.89 -0.50 -11.21 16 13 C 0.52 9.12 6.43 -10.60 -0.07 9.06 16 14 O -0.55 -11.65 15.28 5.56 0.08 -11.57 16 15 C -0.10 -1.33 0.47 -155.74 -0.07 -1.40 16 16 C -0.09 -1.12 4.03 -27.42 -0.11 -1.23 16 17 C -0.15 -1.46 5.12 -27.53 -0.14 -1.61 16 18 C 0.07 0.61 5.77 -4.77 -0.03 0.58 16 19 N -0.54 -5.60 4.79 -236.52 -1.13 -6.73 16 20 C 0.06 0.59 5.77 -4.77 -0.03 0.56 16 21 C -0.15 -1.44 5.13 -27.54 -0.14 -1.58 16 22 C -0.12 -1.47 4.23 -27.44 -0.12 -1.59 16 23 C 0.06 0.71 4.53 -3.97 -0.02 0.69 16 24 C 0.09 1.74 6.59 -3.60 -0.02 1.71 16 25 C 0.16 3.80 5.46 -3.60 -0.02 3.78 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.45 7.76 -51.93 -0.40 0.05 16 28 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 29 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 30 H 0.10 1.27 2.65 -51.93 -0.14 1.14 16 31 H 0.07 0.94 7.89 -51.54 -0.41 0.54 16 32 H 0.07 0.91 8.20 -51.55 -0.42 0.49 16 33 H 0.07 0.62 5.70 -52.11 -0.30 0.32 16 34 H 0.06 0.52 8.27 -51.02 -0.42 0.10 16 35 H 0.07 0.55 8.11 -51.55 -0.42 0.14 16 36 H 0.07 0.65 8.19 -51.57 -0.42 0.23 16 37 H 0.08 0.67 8.20 -51.55 -0.42 0.25 16 38 H 0.07 0.57 8.11 -51.60 -0.42 0.15 16 39 H 0.06 0.57 8.27 -51.05 -0.42 0.14 16 40 H 0.07 0.61 5.68 -52.10 -0.30 0.32 16 41 H 0.06 0.88 8.20 -51.52 -0.42 0.46 16 42 H 0.09 1.14 4.41 -51.53 -0.23 0.91 16 43 H 0.10 1.22 4.41 -52.00 -0.23 0.99 16 44 H 0.08 0.98 8.13 -51.99 -0.42 0.56 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 1.63 7.00 -51.93 -0.36 1.27 16 47 H 0.10 2.75 5.95 -51.93 -0.31 2.44 16 48 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -30.21 340.07 -10.07 -40.29 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.68 Total: 2.18 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -1.04 Total: 5.67 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -1.54 Total: -57.79 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.21 -10.07 -40.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602102417.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.253 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds