Wall clock time and date at job start Fri Apr 10 2020 14:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47068 * 90.00190 * 3 2 1 5 5 H 1.48500 * 109.47365 * 209.99680 * 3 2 1 6 6 H 1.48502 * 109.47307 * 330.00253 * 3 2 1 7 7 C 1.38815 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99687 * 170.31188 * 7 2 1 9 9 N 1.36936 * 119.99940 * 350.31785 * 7 2 1 10 10 C 1.46958 * 120.59287 * 148.66017 * 9 7 2 11 11 C 1.53813 * 108.39760 * 124.75800 * 10 9 7 12 12 N 1.46962 * 108.58142 * 49.63358 * 11 10 9 13 13 C 1.34781 * 120.59004 * 124.62220 * 12 11 10 14 14 O 1.21283 * 119.99666 * 185.18733 * 13 12 11 15 15 C 1.51489 * 120.00444 * 5.19184 * 13 12 11 16 16 C 1.52489 * 108.85494 * 172.96050 * 15 13 12 17 17 C 1.52159 * 112.51389 * 188.48839 * 16 15 13 18 18 C 1.52276 * 112.65811 * 45.30955 * 17 16 15 19 19 N 1.45836 * 112.46037 * 313.41212 * 18 17 16 20 20 C 1.45842 * 114.02265 * 289.01867 * 19 18 17 21 21 C 1.52269 * 112.22213 * 70.23661 * 20 19 18 22 22 C 1.52151 * 112.56765 * 47.16633 * 21 20 19 23 23 C 1.46508 * 112.07186 * 57.48420 * 19 18 17 24 24 C 1.46960 * 118.81267 * 304.65209 * 12 11 10 25 25 C 1.46962 * 120.59278 * 328.93557 * 9 7 2 26 26 H 0.97001 * 119.99881 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.61037 * 244.53849 * 10 9 7 28 28 H 1.09002 * 109.61563 * 5.05016 * 10 9 7 29 29 H 1.08999 * 109.74108 * 289.84402 * 11 10 9 30 30 H 1.09003 * 109.67373 * 169.38638 * 11 10 9 31 31 H 1.09691 * 109.04545 * 309.86753 * 16 15 13 32 32 H 1.09672 * 109.08483 * 67.05928 * 16 15 13 33 33 H 1.08672 * 110.93760 * 280.36295 * 17 16 15 34 34 H 1.10586 * 107.97305 * 164.29403 * 17 16 15 35 35 H 1.09672 * 109.04439 * 192.13634 * 18 17 16 36 36 H 1.09625 * 109.14285 * 74.86482 * 18 17 16 37 37 H 1.09675 * 109.19917 * 191.31099 * 20 19 18 38 38 H 1.09583 * 109.36088 * 308.87343 * 20 19 18 39 39 H 1.10541 * 107.92806 * 166.33563 * 21 20 19 40 40 H 1.08700 * 110.77219 * 282.32952 * 21 20 19 41 41 H 1.09714 * 109.20821 * 193.44815 * 22 21 20 42 42 H 1.09705 * 109.22397 * 76.15570 * 22 21 20 43 43 H 1.08867 * 109.92871 * 175.83201 * 23 19 18 44 44 H 1.08887 * 109.89470 * 54.81020 * 23 19 18 45 45 H 1.09000 * 109.60661 * 295.47327 * 24 12 11 46 46 H 1.08998 * 109.74900 * 175.05406 * 24 12 11 47 47 H 1.09004 * 109.60947 * 354.95544 * 25 9 7 48 48 H 1.08999 * 109.60964 * 115.46011 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0787 -1.2088 -0.1569 9 7 1.3402 -2.3795 0.2005 10 6 1.8074 -3.6223 -0.4294 11 6 2.0178 -4.6754 0.6717 12 7 0.8151 -4.7176 1.5153 13 6 0.1551 -5.8763 1.7113 14 8 -0.8874 -5.8829 2.3310 15 6 0.7155 -7.1703 1.1578 16 6 -0.1285 -8.3321 1.6708 17 6 0.4793 -9.6862 1.3357 18 6 1.9745 -9.7442 1.6182 19 7 2.6844 -8.5790 1.1033 20 6 2.7831 -8.5387 -0.3512 21 6 1.4392 -8.2636 -1.0123 22 6 0.6969 -7.1037 -0.3654 23 6 2.1568 -7.3266 1.6509 24 6 0.3447 -3.4737 2.1406 25 6 0.1375 -2.4217 1.0441 26 1 -0.4850 0.8401 0.0004 27 1 1.0599 -3.9760 -1.1396 28 1 2.7491 -3.4387 -0.9469 29 1 2.8815 -4.4053 1.2793 30 1 2.1810 -5.6531 0.2182 31 1 -0.2362 -8.2433 2.7588 32 1 -1.1318 -8.2674 1.2328 33 1 0.2691 -9.9621 0.3059 34 1 -0.0147 -10.4477 1.9674 35 1 2.3901 -10.6506 1.1614 36 1 2.1334 -9.8159 2.7005 37 1 3.4932 -7.7555 -0.6430 38 1 3.1751 -9.4951 -0.7153 39 1 1.6273 -8.0030 -2.0699 40 1 0.8245 -9.1600 -1.0235 41 1 -0.3444 -7.1038 -0.7111 42 1 1.1514 -6.1589 -0.6882 43 1 2.7566 -6.4875 1.3025 44 1 2.1695 -7.3636 2.7390 45 1 1.0892 -3.1181 2.8529 46 1 -0.5981 -3.6547 2.6568 47 1 -0.0240 -1.4448 1.5000 48 1 -0.7262 -2.6918 0.4365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602102417.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:36 Heat of formation + Delta-G solvation = -5.686058 kcal Electronic energy + Delta-G solvation = -27972.689752 eV Core-core repulsion = 24448.730879 eV Total energy + Delta-G solvation = -3523.958873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.55959 -40.06678 -38.48931 -35.85909 -34.44928 -33.99396 -33.09577 -32.40667 -31.27684 -28.77522 -27.32425 -26.00167 -25.04347 -24.70453 -23.67020 -22.46833 -21.97292 -20.23413 -19.64684 -18.68089 -17.75429 -17.16915 -16.79224 -16.76764 -16.35070 -16.03565 -15.86098 -15.47243 -15.21204 -15.05504 -14.96289 -14.75710 -14.26614 -14.09302 -13.89090 -13.71239 -13.38000 -13.20565 -12.94431 -12.70995 -12.54874 -12.53524 -12.42383 -12.34065 -12.17175 -12.05929 -11.96482 -11.89434 -11.80650 -11.74352 -11.39448 -10.74082 -10.60473 -10.49399 -9.84649 -9.00877 -8.63341 -7.87621 -5.43409 1.48397 1.49509 1.56948 1.58456 1.98854 2.49822 3.01984 3.28030 3.31881 3.54762 3.57411 3.68373 3.93239 4.00952 4.05081 4.15888 4.16388 4.22394 4.25256 4.35617 4.38913 4.43675 4.50893 4.55902 4.61796 4.70365 4.76637 4.77585 4.81689 4.89885 4.97272 5.01500 5.06090 5.10474 5.12390 5.15218 5.19154 5.23309 5.32100 5.43717 5.48486 5.60628 5.67127 6.15674 6.36454 6.39499 6.48556 7.08903 7.13181 7.76765 8.31363 9.16420 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.004008 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.849208 B = 6983.845544 C = 7457.816128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.050 4.050 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.263 1.263 6 H -0.299 1.299 7 C -0.262 4.262 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.126 3.874 11 C 0.079 3.921 12 N -0.596 5.596 13 C 0.510 3.490 14 O -0.594 6.594 15 C -0.090 4.090 16 C -0.085 4.085 17 C -0.144 4.144 18 C 0.065 3.935 19 N -0.542 5.542 20 C 0.061 3.939 21 C -0.145 4.145 22 C -0.116 4.116 23 C 0.066 3.934 24 C 0.099 3.901 25 C 0.171 3.829 26 H 0.250 0.750 27 H 0.014 0.986 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.130 0.870 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.074 0.926 48 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 -21.033 -0.236 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.245 4.245 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.188 1.188 6 H -0.225 1.225 7 C -0.392 4.392 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.000 4.000 11 C -0.044 4.044 12 N -0.327 5.327 13 C 0.299 3.701 14 O -0.475 6.475 15 C -0.095 4.095 16 C -0.124 4.124 17 C -0.183 4.183 18 C -0.063 4.063 19 N -0.262 5.262 20 C -0.067 4.067 21 C -0.183 4.183 22 C -0.154 4.154 23 C -0.063 4.063 24 C -0.025 4.025 25 C 0.045 3.955 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.119 0.881 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges 7.401 -20.949 0.213 22.219 hybrid contribution -1.522 1.722 -0.162 2.304 sum 5.879 -19.227 0.051 20.106 Atomic orbital electron populations 1.70127 1.06932 1.25918 1.55621 1.25977 0.96096 1.01812 1.00595 0.85186 0.78087 0.79115 0.77532 1.21215 1.18783 1.22538 1.19603 0.91380 0.84532 1.43694 0.90512 1.44193 1.30088 1.04867 1.53912 1.21592 0.98603 0.86502 0.93263 1.23121 0.86355 1.01782 0.93153 1.48062 1.28588 1.07422 1.48623 1.21536 0.83464 0.85961 0.79118 1.90605 1.24916 1.87249 1.44738 1.21179 0.99656 0.91150 0.97536 1.21051 0.97593 0.93397 1.00319 1.21981 0.98013 0.95159 1.03168 1.21871 0.90293 0.93137 1.01030 1.60281 1.54075 1.01856 1.09959 1.21948 0.95426 1.04229 0.85048 1.21942 0.98050 0.97681 1.00668 1.21618 1.01358 1.01097 0.91313 1.22397 0.89875 0.94056 0.99955 1.22128 0.99478 0.84651 0.96260 1.20886 0.87396 0.96988 0.90265 0.94084 0.96824 0.89857 0.90452 0.85282 0.93254 0.93497 0.90491 0.90869 0.88581 0.91044 0.89990 0.88483 0.90188 0.90697 0.93314 0.90552 0.88098 0.91103 0.91480 0.91209 0.90772 0.99497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.38 10.93 21.65 0.24 -55.14 16 2 C -0.05 -2.71 5.08 84.86 0.43 -2.28 16 3 Si 0.97 43.77 29.56 68.60 2.03 45.79 16 4 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.26 -13.80 9.59 84.03 0.81 -13.00 16 8 H 0.08 3.82 7.85 -2.91 -0.02 3.80 16 9 N -0.61 -29.68 2.96 -697.36 -2.06 -31.74 16 10 C 0.13 4.82 6.49 86.57 0.56 5.38 16 11 C 0.08 2.40 4.04 86.57 0.35 2.75 16 12 N -0.60 -21.63 2.93 -816.11 -2.39 -24.02 16 13 C 0.51 18.22 6.43 87.91 0.56 18.78 16 14 O -0.59 -25.88 15.28 -3.04 -0.05 -25.92 16 15 C -0.09 -2.32 0.47 -52.98 -0.03 -2.35 16 16 C -0.09 -2.11 4.03 30.15 0.12 -1.99 16 17 C -0.14 -2.39 5.12 30.08 0.15 -2.23 16 18 C 0.06 0.94 5.77 86.27 0.50 1.44 16 19 N -0.54 -9.13 4.79 -902.23 -4.32 -13.45 16 20 C 0.06 0.83 5.77 86.26 0.50 1.33 16 21 C -0.14 -2.24 5.13 30.07 0.15 -2.09 16 22 C -0.12 -2.68 4.23 30.14 0.13 -2.55 16 23 C 0.07 1.42 4.53 86.42 0.39 1.81 16 24 C 0.10 4.18 6.59 86.41 0.57 4.75 16 25 C 0.17 8.60 5.46 86.41 0.47 9.07 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.01 0.55 7.76 -2.38 -0.02 0.53 16 28 H 0.08 2.89 7.93 -2.39 -0.02 2.87 16 29 H 0.08 2.25 8.06 -2.39 -0.02 2.23 16 30 H 0.13 3.11 2.65 -2.39 -0.01 3.10 16 31 H 0.05 1.38 7.89 -2.02 -0.02 1.37 16 32 H 0.05 1.31 8.20 -2.03 -0.02 1.30 16 33 H 0.08 1.15 5.70 -2.56 -0.01 1.13 16 34 H 0.07 1.06 8.27 -1.53 -0.01 1.05 16 35 H 0.10 1.01 8.11 -2.03 -0.02 0.99 16 36 H 0.07 1.07 8.19 -2.05 -0.02 1.05 16 37 H 0.08 1.06 8.20 -2.03 -0.02 1.04 16 38 H 0.10 0.95 8.11 -2.08 -0.02 0.94 16 39 H 0.08 1.07 8.27 -1.56 -0.01 1.06 16 40 H 0.07 1.08 5.68 -2.54 -0.01 1.06 16 41 H 0.05 1.28 8.20 -2.01 -0.02 1.27 16 42 H 0.08 1.89 4.41 -2.01 -0.01 1.89 16 43 H 0.10 2.15 4.41 -2.46 -0.01 2.14 16 44 H 0.07 1.66 8.13 -2.45 -0.02 1.64 16 45 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.07 3.05 7.00 -2.39 -0.02 3.03 16 47 H 0.07 4.16 5.95 -2.38 -0.01 4.14 16 48 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 Total: -1.00 -68.01 340.07 0.10 -67.91 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.98 Total: 17.75 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 5.67 Total: 18.82 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -8.54 Total: -124.35 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.01 0.10 -67.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602102417.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.223 kcal (2) G-P(sol) polarization free energy of solvation -68.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds