Wall clock time and date at job start Fri Apr 10 2020 14:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48497 * 109.46915 * 269.99545 * 3 2 1 5 5 H 1.48499 * 109.47159 * 29.99589 * 3 2 1 6 6 H 1.48496 * 109.47174 * 149.99327 * 3 2 1 7 7 C 1.37874 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00257 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00245 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47542 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00144 * 170.00261 * 10 9 7 12 12 C 1.53055 * 109.36330 * 183.18733 * 11 10 9 13 13 N 1.46956 * 109.36295 * 301.59815 * 12 11 10 14 14 C 1.46899 * 110.99625 * 183.19008 * 13 12 11 15 15 N 1.46504 * 109.46993 * 154.99965 * 14 13 12 16 16 C 1.46874 * 124.35931 * 89.99690 * 15 14 13 17 17 C 1.54702 * 105.61141 * 163.11613 * 16 15 14 18 18 C 1.53909 * 101.38822 * 24.56208 * 17 16 15 19 19 C 1.52769 * 115.46731 * 105.74411 * 18 17 16 20 20 C 1.53971 * 86.77252 * 92.57647 * 19 18 17 21 21 C 1.52769 * 115.45889 * 206.50839 * 18 17 16 22 22 C 1.34740 * 124.35830 * 269.99710 * 15 14 13 23 23 O 1.21280 * 125.14790 * 1.02962 * 22 15 14 24 24 C 1.46955 * 110.88127 * 59.32248 * 13 12 11 25 25 C 1.46956 * 110.99625 * 293.80161 * 10 9 7 26 26 H 0.97006 * 120.00366 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47229 * 60.00387 * 9 7 2 28 28 H 1.09008 * 109.47214 * 300.00440 * 9 7 2 29 29 H 1.08997 * 109.49026 * 63.21939 * 11 10 9 30 30 H 1.09004 * 109.48886 * 303.15361 * 11 10 9 31 31 H 1.08999 * 109.48505 * 181.63108 * 12 11 10 32 32 H 1.09000 * 109.48663 * 61.56472 * 12 11 10 33 33 H 1.08991 * 109.47677 * 34.99972 * 14 13 12 34 34 H 1.09002 * 109.47149 * 274.99319 * 14 13 12 35 35 H 1.09002 * 110.23484 * 282.17548 * 16 15 14 36 36 H 1.09004 * 110.23414 * 44.05972 * 16 15 14 37 37 H 1.08999 * 111.02358 * 142.63699 * 17 16 15 38 38 H 1.08998 * 111.01826 * 266.53533 * 17 16 15 39 39 H 1.09005 * 113.66443 * 207.04600 * 19 18 17 40 40 H 1.08999 * 113.66609 * 338.10709 * 19 18 17 41 41 H 1.08999 * 113.58474 * 270.07487 * 20 19 18 42 42 H 1.09005 * 113.58244 * 139.26922 * 20 19 18 43 43 H 1.09001 * 113.66836 * 21.87952 * 21 18 17 44 44 H 1.08998 * 113.66841 * 152.94823 * 21 18 17 45 45 H 1.08997 * 109.49026 * 60.64525 * 24 13 12 46 46 H 1.09004 * 109.48519 * 180.71502 * 24 13 12 47 47 H 1.09000 * 109.49032 * 296.77421 * 25 10 9 48 48 H 1.08993 * 109.49263 * 56.84286 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4506 -2.6252 -0.2366 12 6 5.9069 -4.0844 -0.3084 13 7 5.5599 -4.7657 0.9466 14 6 6.0496 -6.1506 0.9465 15 7 6.2391 -6.6017 2.3274 16 6 5.2034 -7.2609 3.1336 17 6 5.9537 -7.9277 4.3108 18 6 7.2235 -7.0616 4.3914 19 6 7.2780 -6.0832 5.5634 20 6 8.0141 -7.1901 6.3403 21 6 8.4539 -7.7529 4.9762 22 6 7.3859 -6.4651 3.0214 23 8 8.3963 -5.9400 2.6040 24 6 4.1104 -4.7196 1.1842 25 6 3.6541 -3.2604 1.2560 26 1 -0.4851 0.8401 -0.0004 27 1 3.8744 -0.6802 0.8911 28 1 3.8752 -0.6804 -0.8889 29 1 5.9691 -2.1217 0.5793 30 1 5.6809 -2.1254 -1.1776 31 1 6.9863 -4.1209 -0.4557 32 1 5.4088 -4.5806 -1.1413 33 1 6.9996 -6.2001 0.4146 34 1 5.3218 -6.7933 0.4511 35 1 4.4921 -6.5250 3.5085 36 1 4.6870 -8.0154 2.5401 37 1 5.3744 -7.8610 5.2317 38 1 6.2007 -8.9640 4.0802 39 1 7.8908 -5.2027 5.3702 40 1 6.2987 -5.8376 5.9743 41 1 7.3474 -7.8534 6.8913 42 1 8.8412 -6.8210 6.9469 43 1 8.4136 -8.8406 4.9182 44 1 9.3980 -7.3428 4.6176 45 1 3.5920 -5.2230 0.3683 46 1 3.8802 -5.2193 2.1252 47 1 4.1522 -2.7642 2.0889 48 1 2.5748 -3.2237 1.4034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872733544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:14 Heat of formation + Delta-G solvation = 13.443595 kcal Electronic energy + Delta-G solvation = -26278.789845 eV Core-core repulsion = 22755.660496 eV Total energy + Delta-G solvation = -3523.129349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31338 -38.91526 -37.59582 -36.34595 -34.78408 -32.45227 -30.76284 -30.53077 -28.45824 -26.99762 -26.12300 -25.78713 -23.66855 -23.18222 -22.74378 -21.08168 -20.09028 -19.28811 -18.75980 -16.87231 -16.75707 -16.68062 -16.03563 -15.44962 -15.34063 -14.75551 -14.43234 -14.37443 -14.34385 -13.88182 -13.68924 -13.55876 -13.15099 -13.07381 -12.84189 -12.48954 -12.45217 -12.21409 -12.03414 -11.93347 -11.51868 -11.48233 -11.34804 -10.98573 -10.84805 -10.68985 -10.64796 -10.59453 -10.42678 -10.16463 -9.85049 -9.63593 -9.27919 -8.91575 -8.57674 -8.23143 -7.37916 -6.06493 -4.03810 2.48678 2.87164 3.28506 3.35929 3.39077 3.97151 4.08072 4.11572 4.26537 4.41707 4.47758 4.50652 4.71784 4.75655 4.90403 5.02518 5.05892 5.16709 5.26086 5.27896 5.34959 5.38203 5.46848 5.48570 5.51790 5.58694 5.62462 5.67745 5.70372 5.73073 5.80196 5.85674 5.96311 6.06428 6.09708 6.29535 6.42085 6.48353 6.60916 6.82149 6.94516 7.01064 7.12184 7.27562 7.58762 7.89797 8.03841 8.17496 8.64621 9.00877 9.55595 11.06520 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.003017 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.107143 B = 9279.719074 C = 9477.140852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.069 3.931 13 N -0.554 5.554 14 C 0.293 3.707 15 N -0.609 5.609 16 C 0.101 3.899 17 C -0.109 4.109 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.138 4.138 21 C -0.113 4.113 22 C 0.539 3.461 23 O -0.525 6.525 24 C 0.060 3.940 25 C 0.068 3.932 26 H 0.264 0.736 27 H -0.011 1.011 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.041 0.959 46 H 0.069 0.931 47 H 0.028 0.972 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.806 -18.747 9.849 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.060 4.060 13 N -0.282 5.282 14 C 0.082 3.918 15 N -0.344 5.344 16 C -0.022 4.022 17 C -0.146 4.146 18 C -0.129 4.129 19 C -0.148 4.148 20 C -0.175 4.175 21 C -0.151 4.151 22 C 0.326 3.674 23 O -0.400 6.400 24 C -0.068 4.068 25 C -0.060 4.060 26 H 0.073 0.927 27 H 0.007 0.993 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.046 0.954 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.164 -18.316 9.517 25.033 hybrid contribution 0.162 1.085 -0.093 1.101 sum 14.326 -17.231 9.424 24.310 Atomic orbital electron populations 1.69890 1.06117 1.26855 1.51123 1.24891 0.94736 0.98868 0.94809 0.86864 0.80342 0.83985 0.78609 1.20137 1.21192 1.19259 1.21015 0.88698 0.94667 1.50337 0.90212 1.20153 0.97038 0.84066 0.95112 1.62123 1.10380 1.19136 1.33746 1.22110 0.90145 0.94652 1.00561 1.22069 0.99735 0.94960 0.89201 1.61893 1.15094 1.15261 1.35933 1.21703 1.00595 0.88294 0.81217 1.48431 1.13016 1.58868 1.14063 1.22171 0.90987 0.96631 0.92435 1.22409 0.94573 0.98769 0.98889 1.22078 0.97912 0.99079 0.93807 1.22659 1.01704 0.96828 0.93566 1.22893 1.00360 0.97985 0.96254 1.22697 0.96824 0.99890 0.95668 1.20341 0.82670 0.77923 0.86503 1.90682 1.31098 1.44133 1.74062 1.22305 0.86085 0.98369 1.00046 1.22003 1.01668 0.91607 0.90771 0.92663 0.99332 0.95804 0.95059 0.90800 0.90824 0.93879 0.89153 0.92447 0.90865 0.90418 0.89053 0.89754 0.89316 0.90536 0.89872 0.91011 0.90903 0.89073 0.94028 0.91303 0.95409 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.51 -14.45 9.03 -34.44 -0.31 -14.77 16 8 H 0.08 2.45 7.37 -52.49 -0.39 2.06 16 9 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 10 N -0.53 -11.27 4.70 -235.91 -1.11 -12.38 16 11 C 0.05 0.98 5.61 -3.77 -0.02 0.96 16 12 C 0.07 1.04 5.53 -3.77 -0.02 1.01 16 13 N -0.55 -8.31 4.81 -238.37 -1.15 -9.46 16 14 C 0.29 3.64 5.76 -63.31 -0.36 3.27 16 15 N -0.61 -7.14 3.15 -176.00 -0.55 -7.69 16 16 C 0.10 0.84 6.76 -2.94 -0.02 0.82 16 17 C -0.11 -0.72 6.37 -25.36 -0.16 -0.89 16 18 C -0.13 -1.17 1.04 -155.63 -0.16 -1.33 16 19 C -0.11 -0.97 7.31 -26.34 -0.19 -1.17 16 20 C -0.14 -0.94 7.94 -25.73 -0.20 -1.14 16 21 C -0.11 -0.92 7.36 -26.34 -0.19 -1.11 16 22 C 0.54 7.17 7.35 -11.20 -0.08 7.08 16 23 O -0.52 -9.04 17.40 5.56 0.10 -8.94 16 24 C 0.06 0.92 5.47 -3.77 -0.02 0.90 16 25 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 28 H 0.02 0.59 7.45 -51.92 -0.39 0.20 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.07 1.02 7.98 -51.93 -0.41 0.60 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.16 7.56 -51.93 -0.39 0.76 16 34 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 35 H 0.07 0.64 6.91 -51.93 -0.36 0.28 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.47 7.94 -51.93 -0.41 0.05 16 38 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 44 H 0.09 0.88 7.98 -51.93 -0.41 0.47 16 45 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.07 0.94 6.19 -51.93 -0.32 0.62 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.09 1.96 6.79 -51.93 -0.35 1.61 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -33.47 369.43 -11.38 -44.85 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.45 Total: -3.04 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.89 Total: 0.84 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -2.04 Total: -56.29 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.10 Total: -8.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.47 -11.38 -44.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.298 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds