Wall clock time and date at job start Fri Apr 10 2020 14:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99648 * 2 1 4 4 H 1.48497 * 109.46839 * 239.99840 * 3 2 1 5 5 H 1.48500 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47148 * 119.99941 * 3 2 1 7 7 C 1.37872 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99825 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.46957 * 110.99603 * 170.00371 * 10 9 7 12 12 C 1.53059 * 109.36246 * 183.18479 * 11 10 9 13 13 N 1.46953 * 109.36529 * 301.59946 * 12 11 10 14 14 C 1.46899 * 110.99938 * 183.18864 * 13 12 11 15 15 N 1.46499 * 109.47035 * 154.99499 * 14 13 12 16 16 C 1.46766 * 124.35286 * 269.72174 * 15 14 13 17 17 C 1.54663 * 105.38183 * 162.85253 * 16 15 14 18 18 H 1.08998 * 110.81331 * 143.77623 * 17 16 15 19 19 C 1.52991 * 111.22817 * 267.58193 * 17 16 15 20 20 C 1.52999 * 117.49934 * 242.50615 * 19 17 16 21 21 C 1.53001 * 117.49881 * 173.88236 * 19 17 16 22 22 C 1.54635 * 101.68251 * 25.77174 * 17 16 15 23 23 C 1.34426 * 124.34837 * 90.02372 * 15 14 13 24 24 O 1.21283 * 124.94153 * 0.43036 * 23 15 14 25 25 C 1.46959 * 110.88358 * 59.31639 * 13 12 11 26 26 C 1.46960 * 111.00002 * 293.79630 * 10 9 7 27 27 H 0.96999 * 120.00467 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47102 * 60.00141 * 9 7 2 29 29 H 1.08993 * 109.47299 * 299.99551 * 9 7 2 30 30 H 1.08998 * 109.49476 * 63.22290 * 11 10 9 31 31 H 1.08998 * 109.50508 * 303.15824 * 11 10 9 32 32 H 1.08998 * 109.48695 * 181.62880 * 12 11 10 33 33 H 1.09006 * 109.50428 * 61.57288 * 12 11 10 34 34 H 1.09002 * 109.47043 * 274.99727 * 14 13 12 35 35 H 1.09001 * 109.47354 * 34.99789 * 14 13 12 36 36 H 1.08997 * 110.24786 * 281.98872 * 16 15 14 37 37 H 1.09004 * 110.24051 * 43.98515 * 16 15 14 38 38 H 1.09001 * 115.54855 * 28.21321 * 19 17 16 39 39 H 1.08995 * 117.49839 * 359.97438 * 20 19 17 40 40 H 1.09000 * 117.49923 * 145.02399 * 20 19 17 41 41 H 1.09003 * 117.49955 * 214.97945 * 21 19 17 42 42 H 1.08998 * 117.49598 * 0.02562 * 21 19 17 43 43 H 1.08995 * 110.48065 * 216.30043 * 22 17 16 44 44 H 1.09004 * 110.59510 * 93.71909 * 22 17 16 45 45 H 1.08999 * 109.48363 * 60.64896 * 25 13 12 46 46 H 1.08993 * 109.48850 * 180.71252 * 25 13 12 47 47 H 1.09000 * 109.48916 * 296.78289 * 26 10 9 48 48 H 1.08995 * 109.48548 * 56.82323 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5208 -4.8938 0.2400 12 6 2.5563 -6.0186 0.3128 13 7 3.3203 -6.0596 -0.9418 14 6 4.2750 -7.1761 -0.9406 15 7 4.5713 -7.5667 -2.3211 16 6 3.8217 -8.5789 -3.0745 17 6 4.1855 -8.3386 -4.5584 18 1 4.2510 -9.2829 -5.0989 19 6 3.1844 -7.3956 -5.2286 20 6 2.3636 -7.9496 -6.3948 21 6 3.4869 -6.9450 -6.6591 22 6 5.5761 -7.6734 -4.4361 23 6 5.5684 -7.0482 -3.0587 24 8 6.3486 -6.2024 -2.6753 25 6 4.0052 -4.7813 -1.1801 26 6 2.9697 -3.6567 -1.2530 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 0.8259 -5.0918 -0.5761 31 1 0.9723 -4.8431 1.1805 32 1 2.0483 -6.9715 0.4606 33 1 3.2349 -5.8351 1.1460 34 1 5.1952 -6.8668 -0.4449 35 1 3.8426 -8.0233 -0.4082 36 1 4.1244 -9.5795 -2.7662 37 1 2.7505 -8.4448 -2.9235 38 1 2.6989 -6.6782 -4.5670 39 1 2.5371 -8.9858 -6.6849 40 1 1.3377 -7.5968 -6.5007 41 1 3.2000 -5.9312 -6.9388 42 1 4.3989 -7.3208 -7.1229 43 1 5.7013 -6.9080 -5.2019 44 1 6.3664 -8.4203 -4.5118 45 1 4.7001 -4.5835 -0.3640 46 1 4.5535 -4.8324 -2.1207 47 1 2.2912 -3.8405 -2.0860 48 1 3.4773 -2.7036 -1.4009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872734083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:44 Heat of formation + Delta-G solvation = 10.465918 kcal Electronic energy + Delta-G solvation = -26325.860849 eV Core-core repulsion = 22802.602378 eV Total energy + Delta-G solvation = -3523.258471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73574 -38.58946 -37.71629 -35.98606 -34.83550 -32.58744 -31.46915 -30.38126 -28.10499 -27.83474 -25.77027 -23.77350 -23.39694 -22.75860 -22.52364 -21.34951 -20.35230 -19.46636 -19.13895 -16.90116 -16.65194 -16.30065 -15.96215 -15.55955 -15.19261 -14.63903 -14.54564 -14.26362 -14.17978 -13.91035 -13.72323 -13.44983 -13.13257 -13.06760 -12.72213 -12.53987 -12.08654 -11.96289 -11.77971 -11.71672 -11.70118 -11.17095 -11.12386 -10.84457 -10.68976 -10.63146 -10.52138 -10.37250 -10.34147 -10.25341 -9.74005 -9.72162 -9.16971 -8.91066 -8.40646 -8.17287 -7.19888 -5.99775 -4.01016 2.52697 2.94128 3.36587 3.39805 3.43690 3.47726 4.12327 4.16344 4.24082 4.37827 4.45496 4.61029 4.82899 4.88500 4.98014 5.00162 5.11732 5.17629 5.24240 5.26522 5.35764 5.39301 5.41813 5.48289 5.58688 5.62013 5.67831 5.73944 5.78395 5.83280 5.89797 5.98115 6.06279 6.14018 6.23444 6.38447 6.44049 6.62772 6.75705 7.02350 7.20763 7.22768 7.37044 7.41073 7.83310 8.11912 8.16154 8.23861 8.58688 9.06461 9.63205 11.11096 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.003399 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.041130 B = 8236.687218 C = 8658.234288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.538 5.538 11 C 0.058 3.942 12 C 0.066 3.934 13 N -0.555 5.555 14 C 0.290 3.710 15 N -0.606 5.606 16 C 0.112 3.888 17 C -0.067 4.067 18 H 0.095 0.905 19 C -0.147 4.147 20 C -0.176 4.176 21 C -0.179 4.179 22 C -0.151 4.151 23 C 0.519 3.481 24 O -0.530 6.530 25 C 0.063 3.937 26 C 0.070 3.930 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.025 0.975 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -22.373 -9.764 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.263 5.263 11 C -0.071 4.071 12 C -0.062 4.062 13 N -0.282 5.282 14 C 0.079 3.921 15 N -0.341 5.341 16 C -0.011 4.011 17 C -0.086 4.086 18 H 0.113 0.887 19 C -0.165 4.165 20 C -0.213 4.213 21 C -0.216 4.216 22 C -0.191 4.191 23 C 0.306 3.694 24 O -0.406 6.406 25 C -0.065 4.065 26 C -0.059 4.059 27 H 0.071 0.929 28 H 0.008 0.992 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.043 0.957 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.802 -21.773 -9.461 24.695 hybrid contribution 0.175 0.956 -0.049 0.973 sum 6.977 -20.817 -9.510 23.927 Atomic orbital electron populations 1.69949 1.06055 1.26843 1.51085 1.24976 0.94851 0.99269 0.95434 0.86568 0.79447 0.82755 0.78702 1.20249 1.21356 1.20164 1.21130 0.93453 0.89993 1.50028 0.91980 1.19687 0.90016 0.87323 0.96019 1.62290 1.28002 1.02684 1.33372 1.22042 0.94602 0.90036 1.00429 1.22105 0.95944 0.98699 0.89460 1.61955 1.26701 1.04047 1.35501 1.21705 0.95394 0.93866 0.81131 1.48330 1.31687 1.39791 1.14304 1.22119 0.97875 0.91110 0.89975 1.21738 0.93234 0.98464 0.95165 0.88693 1.22285 1.01189 1.01950 0.91046 1.23010 0.96786 0.98947 1.02540 1.22951 1.00096 0.99993 0.98531 1.22434 0.98118 1.02082 0.96451 1.20882 0.80097 0.81018 0.87389 1.90745 1.42043 1.31642 1.76209 1.22278 0.95610 0.87789 1.00808 1.21974 0.95303 0.97588 0.90997 0.92905 0.99158 0.95249 0.95264 0.90947 0.91156 0.94035 0.92061 0.89481 0.91163 0.89712 0.86994 0.88821 0.88768 0.88650 0.88753 0.87860 0.88074 0.94278 0.90753 0.95666 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.63 8.47 -34.44 -0.29 -14.92 16 8 H 0.06 1.78 7.13 -52.49 -0.37 1.41 16 9 C 0.19 5.21 4.72 -4.97 -0.02 5.19 16 10 N -0.54 -12.07 4.70 -235.91 -1.11 -13.18 16 11 C 0.06 1.07 5.61 -3.76 -0.02 1.05 16 12 C 0.07 0.97 5.53 -3.76 -0.02 0.95 16 13 N -0.55 -8.34 4.81 -238.37 -1.15 -9.48 16 14 C 0.29 3.56 5.78 -63.32 -0.37 3.20 16 15 N -0.61 -6.84 3.15 -175.79 -0.55 -7.39 16 16 C 0.11 0.88 6.90 -3.02 -0.02 0.86 16 17 C -0.07 -0.48 3.31 -88.89 -0.29 -0.77 16 18 H 0.09 0.47 7.97 -51.93 -0.41 0.06 16 19 C -0.15 -1.25 5.15 -90.62 -0.47 -1.72 16 20 C -0.18 -1.27 10.19 -26.73 -0.27 -1.54 16 21 C -0.18 -1.41 9.49 -26.73 -0.25 -1.67 16 22 C -0.15 -1.31 6.35 -26.74 -0.17 -1.48 16 23 C 0.52 6.74 7.29 -10.86 -0.08 6.66 16 24 O -0.53 -9.20 16.24 5.55 0.09 -9.11 16 25 C 0.06 1.13 5.40 -3.77 -0.02 1.11 16 26 C 0.07 1.48 5.43 -3.77 -0.02 1.46 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 29 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.07 0.83 7.98 -51.93 -0.41 0.42 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.84 7.68 -51.93 -0.40 0.44 16 35 H 0.09 0.84 7.75 -51.93 -0.40 0.43 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 38 H 0.11 1.26 8.11 -51.93 -0.42 0.84 16 39 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.10 0.93 7.25 -51.93 -0.38 0.56 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.07 1.39 5.95 -51.93 -0.31 1.08 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 1.95 6.79 -51.93 -0.35 1.60 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -33.02 376.47 -12.24 -45.26 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.49 Total: -2.35 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.42 Total: -0.10 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -2.07 Total: -56.49 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.02 -12.24 -45.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.723 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds