Wall clock time and date at job start Fri Apr 10 2020 14:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99648 * 2 1 4 4 H 1.48497 * 109.46839 * 239.99840 * 3 2 1 5 5 H 1.48500 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47148 * 119.99941 * 3 2 1 7 7 C 1.37872 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99825 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.46957 * 110.99603 * 170.00371 * 10 9 7 12 12 C 1.53059 * 109.36246 * 183.18479 * 11 10 9 13 13 N 1.46953 * 109.36529 * 301.59946 * 12 11 10 14 14 C 1.46899 * 110.99938 * 183.18864 * 13 12 11 15 15 N 1.46499 * 109.47035 * 154.99499 * 14 13 12 16 16 C 1.46766 * 124.35286 * 269.72174 * 15 14 13 17 17 C 1.54663 * 105.38183 * 162.85253 * 16 15 14 18 18 H 1.08998 * 110.81331 * 143.77623 * 17 16 15 19 19 C 1.52991 * 111.22817 * 267.58193 * 17 16 15 20 20 C 1.52999 * 117.49934 * 242.50615 * 19 17 16 21 21 C 1.53001 * 117.49881 * 173.88236 * 19 17 16 22 22 C 1.54635 * 101.68251 * 25.77174 * 17 16 15 23 23 C 1.34426 * 124.34837 * 90.02372 * 15 14 13 24 24 O 1.21283 * 124.94153 * 0.43036 * 23 15 14 25 25 C 1.46959 * 110.88358 * 59.31639 * 13 12 11 26 26 C 1.46960 * 111.00002 * 293.79630 * 10 9 7 27 27 H 0.96999 * 120.00467 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47102 * 60.00141 * 9 7 2 29 29 H 1.08993 * 109.47299 * 299.99551 * 9 7 2 30 30 H 1.08998 * 109.49476 * 63.22290 * 11 10 9 31 31 H 1.08998 * 109.50508 * 303.15824 * 11 10 9 32 32 H 1.08998 * 109.48695 * 181.62880 * 12 11 10 33 33 H 1.09006 * 109.50428 * 61.57288 * 12 11 10 34 34 H 1.09002 * 109.47043 * 274.99727 * 14 13 12 35 35 H 1.09001 * 109.47354 * 34.99789 * 14 13 12 36 36 H 1.08997 * 110.24786 * 281.98872 * 16 15 14 37 37 H 1.09004 * 110.24051 * 43.98515 * 16 15 14 38 38 H 1.09001 * 115.54855 * 28.21321 * 19 17 16 39 39 H 1.08995 * 117.49839 * 359.97438 * 20 19 17 40 40 H 1.09000 * 117.49923 * 145.02399 * 20 19 17 41 41 H 1.09003 * 117.49955 * 214.97945 * 21 19 17 42 42 H 1.08998 * 117.49598 * 0.02562 * 21 19 17 43 43 H 1.08995 * 110.48065 * 216.30043 * 22 17 16 44 44 H 1.09004 * 110.59510 * 93.71909 * 22 17 16 45 45 H 1.08999 * 109.48363 * 60.64896 * 25 13 12 46 46 H 1.08993 * 109.48850 * 180.71252 * 25 13 12 47 47 H 1.09000 * 109.48916 * 296.78289 * 26 10 9 48 48 H 1.08995 * 109.48548 * 56.82323 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5208 -4.8938 0.2400 12 6 2.5563 -6.0186 0.3128 13 7 3.3203 -6.0596 -0.9418 14 6 4.2750 -7.1761 -0.9406 15 7 4.5713 -7.5667 -2.3211 16 6 3.8217 -8.5789 -3.0745 17 6 4.1855 -8.3386 -4.5584 18 1 4.2510 -9.2829 -5.0989 19 6 3.1844 -7.3956 -5.2286 20 6 2.3636 -7.9496 -6.3948 21 6 3.4869 -6.9450 -6.6591 22 6 5.5761 -7.6734 -4.4361 23 6 5.5684 -7.0482 -3.0587 24 8 6.3486 -6.2024 -2.6753 25 6 4.0052 -4.7813 -1.1801 26 6 2.9697 -3.6567 -1.2530 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 0.8259 -5.0918 -0.5761 31 1 0.9723 -4.8431 1.1805 32 1 2.0483 -6.9715 0.4606 33 1 3.2349 -5.8351 1.1460 34 1 5.1952 -6.8668 -0.4449 35 1 3.8426 -8.0233 -0.4082 36 1 4.1244 -9.5795 -2.7662 37 1 2.7505 -8.4448 -2.9235 38 1 2.6989 -6.6782 -4.5670 39 1 2.5371 -8.9858 -6.6849 40 1 1.3377 -7.5968 -6.5007 41 1 3.2000 -5.9312 -6.9388 42 1 4.3989 -7.3208 -7.1229 43 1 5.7013 -6.9080 -5.2019 44 1 6.3664 -8.4203 -4.5118 45 1 4.7001 -4.5835 -0.3640 46 1 4.5535 -4.8324 -2.1207 47 1 2.2912 -3.8405 -2.0860 48 1 3.4773 -2.7036 -1.4009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872734083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:44 Heat of formation + Delta-G solvation = -12.468688 kcal Electronic energy + Delta-G solvation = -26326.855368 eV Core-core repulsion = 22802.602378 eV Total energy + Delta-G solvation = -3524.252990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61818 -40.02424 -38.54526 -37.13768 -36.19020 -34.59889 -32.52826 -31.90389 -29.84808 -28.56358 -27.40004 -25.19615 -24.61947 -23.80524 -23.26214 -23.09903 -21.03739 -20.69779 -20.38170 -18.53531 -17.90134 -17.60556 -16.95993 -16.75233 -16.31315 -16.08213 -15.88624 -15.76985 -15.49805 -15.21547 -14.91811 -14.87185 -14.47034 -13.98158 -13.90069 -13.51557 -13.49410 -13.34429 -13.11254 -12.95018 -12.74863 -12.50604 -12.36456 -12.32970 -12.29998 -12.20067 -11.99339 -11.80625 -11.59621 -11.26649 -11.13027 -11.03344 -10.65331 -10.62116 -9.88688 -9.42394 -9.08780 -8.24668 -6.35178 1.37152 1.40514 1.48624 1.55469 2.08886 2.36824 2.85770 2.94742 3.07103 3.23789 3.45028 3.57055 3.76752 3.90689 3.94911 4.03805 4.12984 4.21973 4.27175 4.30226 4.35847 4.41785 4.44941 4.52068 4.59000 4.60859 4.73243 4.79577 4.80793 4.85018 4.89016 4.96293 4.97412 5.01543 5.09920 5.13940 5.21034 5.22837 5.32585 5.39767 5.49147 5.58996 5.83650 6.00628 6.03108 6.24114 6.27206 6.58421 6.79539 7.20506 7.34479 8.86322 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.003399 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.041130 B = 8236.687218 C = 8658.234288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.211 3.789 10 N -0.545 5.545 11 C 0.054 3.946 12 C 0.075 3.925 13 N -0.556 5.556 14 C 0.289 3.711 15 N -0.606 5.606 16 C 0.109 3.891 17 C -0.054 4.054 18 H 0.133 0.867 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.186 4.186 22 C -0.143 4.143 23 C 0.503 3.497 24 O -0.586 6.586 25 C 0.084 3.916 26 C 0.078 3.922 27 H 0.266 0.734 28 H -0.041 1.041 29 H 0.009 0.991 30 H 0.022 0.978 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.026 0.974 46 H 0.066 0.934 47 H 0.012 0.988 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -25.213 -10.286 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.084 3.916 10 N -0.270 5.270 11 C -0.075 4.075 12 C -0.052 4.052 13 N -0.284 5.284 14 C 0.078 3.922 15 N -0.340 5.340 16 C -0.012 4.012 17 C -0.072 4.072 18 H 0.151 0.849 19 C -0.177 4.177 20 C -0.198 4.198 21 C -0.223 4.223 22 C -0.183 4.183 23 C 0.292 3.708 24 O -0.467 6.467 25 C -0.044 4.044 26 C -0.051 4.051 27 H 0.075 0.925 28 H -0.023 1.023 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.115 0.885 44 H 0.147 0.853 45 H 0.044 0.956 46 H 0.084 0.916 47 H 0.030 0.970 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.490 -24.674 -9.993 27.654 hybrid contribution -0.117 1.800 0.100 1.807 sum 7.373 -22.873 -9.893 25.989 Atomic orbital electron populations 1.70067 1.07622 1.28071 1.51480 1.25882 0.95772 1.03077 0.94597 0.85461 0.78246 0.78021 0.79057 1.19559 1.20295 1.19281 1.21408 0.93397 0.91327 1.50565 0.92479 1.19335 0.89970 0.88812 0.93442 1.62219 1.27378 1.03572 1.33807 1.22196 0.95704 0.89228 1.00324 1.22094 0.95034 0.98992 0.89128 1.61966 1.27197 1.03261 1.35933 1.21812 0.94249 0.93817 0.82303 1.48489 1.31457 1.39945 1.14062 1.22407 0.97370 0.91514 0.89922 1.21776 0.91239 0.99214 0.95005 0.84934 1.22201 1.02287 1.02241 0.90959 1.23077 0.96050 0.99922 1.00767 1.23002 1.01328 0.99706 0.98242 1.22462 1.00174 1.02394 0.93246 1.21719 0.79616 0.80369 0.89066 1.90707 1.44227 1.34169 1.77569 1.21895 0.94069 0.88504 0.99934 1.21846 0.95390 0.97825 0.90061 0.92525 1.02324 0.97274 0.95962 0.90371 0.86685 0.94010 0.93723 0.85502 0.87692 0.89955 0.90629 0.86298 0.89551 0.90323 0.87076 0.88493 0.85333 0.95559 0.91564 0.97001 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 46.07 29.54 68.60 2.03 48.09 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.53 -31.63 8.47 25.60 0.22 -31.42 16 8 H 0.06 3.40 7.13 -2.91 -0.02 3.38 16 9 C 0.21 11.88 4.72 85.56 0.40 12.28 16 10 N -0.54 -25.42 4.70 -900.27 -4.23 -29.65 16 11 C 0.05 1.99 5.61 86.31 0.48 2.47 16 12 C 0.08 2.08 5.53 86.31 0.48 2.56 16 13 N -0.56 -16.24 4.81 -908.07 -4.37 -20.60 16 14 C 0.29 6.53 5.78 170.81 0.99 7.52 16 15 N -0.61 -12.54 3.15 -828.66 -2.61 -15.15 16 16 C 0.11 1.32 6.90 86.90 0.60 1.92 16 17 C -0.05 -0.58 3.31 -9.67 -0.03 -0.62 16 18 H 0.13 0.56 7.97 -2.39 -0.02 0.54 16 19 C -0.16 -2.50 5.15 -10.80 -0.06 -2.55 16 20 C -0.16 -1.98 10.19 30.59 0.31 -1.67 16 21 C -0.19 -2.73 9.49 30.60 0.29 -2.44 16 22 C -0.14 -2.18 6.35 30.59 0.19 -1.98 16 23 C 0.50 12.73 7.29 87.89 0.64 13.37 16 24 O -0.59 -20.92 16.24 -3.04 -0.05 -20.97 16 25 C 0.08 3.15 5.40 86.31 0.47 3.61 16 26 C 0.08 3.46 5.43 86.31 0.47 3.93 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 29 H 0.01 0.55 8.03 -2.39 -0.02 0.53 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 2.77 8.07 -2.39 -0.02 2.75 16 32 H 0.12 2.24 7.98 -2.39 -0.02 2.22 16 33 H 0.04 1.18 8.14 -2.38 -0.02 1.17 16 34 H 0.04 1.19 7.68 -2.39 -0.02 1.17 16 35 H 0.13 1.89 7.75 -2.39 -0.02 1.87 16 36 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 1.10 7.92 -2.39 -0.02 1.08 16 38 H 0.08 1.75 8.11 -2.39 -0.02 1.73 16 39 H 0.12 0.89 8.08 -2.39 -0.02 0.87 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.11 1.25 8.09 -2.39 -0.02 1.23 16 43 H 0.10 1.64 7.25 -2.39 -0.02 1.62 16 44 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 46 H 0.07 2.60 5.95 -2.39 -0.01 2.58 16 47 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 2.86 6.79 -2.39 -0.02 2.84 16 Total: -1.00 -76.71 376.47 -2.11 -78.83 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.92 Total: 9.04 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.92 Total: 7.75 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -10.92 Total: -122.74 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.71 -2.11 -78.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.357 kcal (2) G-P(sol) polarization free energy of solvation -76.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds